View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12099_high_5 (Length: 313)
Name: NF12099_high_5
Description: NF12099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12099_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 4894799 - 4895088
Alignment:
| Q |
18 |
taacttatagtcaaatggaaacgttggtcagaatcgtccctgcacattagggaaatataaattaaatcataggtttgcagcttctatacattaactttca |
117 |
Q |
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| T |
4894799 |
taacttatagtcaaatggaaacgttggtcagaatcgtccctgcgcattagggaaatataaattaaatcataggtttgcagcttctatacattaactttca |
4894898 |
T |
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| Q |
118 |
attttttgttccttctgtcctttccaccatttggaaatttgaatcaacaagatgaagaggaaataaatgaaaatgaaatggtcatgaccaatcccaatac |
217 |
Q |
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| T |
4894899 |
attttttgttccttctgtcctttccaccatttggaaatttgaatcaacaagatgaagaggaaataaatgaaaatgaaatggtcatgaccgatcccaatac |
4894998 |
T |
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| Q |
218 |
taagctaatattaaatcctacttagtactttggacacttcttatggtctatagtttttggagttccattgaaaaattgagtctctgcttc |
307 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4894999 |
taagctaatattaaatcctatttagtactttggacacttcttatggtctatagtttttggagttccattgaaaaattgagtctttgcttc |
4895088 |
T |
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