View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12099_low_1 (Length: 617)
Name: NF12099_low_1
Description: NF12099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12099_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 592
Target Start/End: Original strand, 2653621 - 2654209
Alignment:
| Q |
1 |
ataaatgtttactgcttacataattaaaatcctaaatctaaaacatcaagtaaggatttgagaagatgcaatttgaagcaacattgagatatagatatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2653621 |
ataaatgtttactgcttacataattaaaatcctaaatctaaaacatcaagtaaggatttgagaagatgcaatttgaagcaacattgagatatagatatat |
2653720 |
T |
|
| Q |
101 |
--gcacaagcaatatacataatctttgtttaaataccgcctatctatcattttctgcagatttcaaacacagttttatgtcttaaaaatttacagattcc |
198 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2653721 |
atgcacaagcaatatacagaatctttgtttaaataccgcctatctatcattttctgcagatttcaaacaccgttttatgtcttaaaaatttacagattcc |
2653820 |
T |
|
| Q |
199 |
gcaaggaaagtgaccaaatatataataaacatactgaagtttccaacttttggacttgaattcctcattgtggaagacagaaaaagcttgtacaaagggt |
298 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
2653821 |
gcaaggaaagtgaccaaata----ataaacatactgaagtttccaacttttggacttgaattcctcattgtggaagacaaaaaaatcttgtacaaagggt |
2653916 |
T |
|
| Q |
299 |
ccttaatttgtttttattatatctttctt-ttataaatcagcggaaatgagattttgctgagctcaattaaattagggaaaagatgcagtttctctcatt |
397 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2653917 |
ccttaatttgtttttattgtatctttcttattataaatctgcggaaatgagattttgctgagctcaattaaattaggaaaaagatgcagtttctctcatt |
2654016 |
T |
|
| Q |
398 |
aactcttagtcattagtatgtttgttgcaatgtttgctataagatgcacaaatttcatactgttttcctcatatcttgcacaaaacaatatgaacataac |
497 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2654017 |
aactcttagtcattagtatgtacgttgcaatgtttgctataagatgcacaaatttcatactgttttcctcatatcttgcacaaaacaatatgaattgaac |
2654116 |
T |
|
| Q |
498 |
agaattttatcatggatgtggtacttaatgaaggttatacgatcgctttgagtggtatcatggtggtcactatgtctatataaagaattaccacg |
592 |
Q |
| |
|
| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2654117 |
ataactttatcatggatgtggtacttaatgaaggt--tacgatcgctttgagtggtatcacggtggtcactatgtctatataaagaattaccacg |
2654209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 517 - 588
Target Start/End: Complemental strand, 25608874 - 25608805
Alignment:
| Q |
517 |
ggtacttaatgaaggttatacgatcgctttgagtggtatcatggtggtcactatgtctatataaagaattac |
588 |
Q |
| |
|
||||||||||||||||||| || |||||||||| |||| |||||||||||||| ||||||||||||||| |
|
|
| T |
25608874 |
ggtacttaatgaaggttat--gaaagctttgagtgatatcgcggtggtcactatgtgtatataaagaattac |
25608805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University