View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12099_low_11 (Length: 254)
Name: NF12099_low_11
Description: NF12099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12099_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 27026222 - 27026001
Alignment:
| Q |
17 |
tgatccgatacgtagttgtgttagcaaaaattttctcccaaaggtcatgtttttggctgccgtagctcgcccaagatttgattcacatagaaatgtaaca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27026222 |
tgatccgatacgtagttgtgttagcaaaaattttctcccaaaggtcatgtttttggctgccgtagctcgcccaagatttgattcacatagaaatgtaaca |
27026123 |
T |
|
| Q |
117 |
tttgatggaaaaattggcgtctttccttttgtcataagagagtctgctaaaaggactagtgttaatagagtggctggtacaatggagactaaaccaatcc |
216 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27026122 |
ttcgatggaaaaattggcgtctttccttttgtcataagagagcctgctaaaaggactagtgttaatagagtggctggtacaatggagactaaaccaatcc |
27026023 |
T |
|
| Q |
217 |
tttcagtcactagagctattat |
238 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
27026022 |
tttcagtcactagagctattat |
27026001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 8696048 - 8695996
Alignment:
| Q |
162 |
gctaaaaggactagtgttaatagagtggctggtacaatggagactaaaccaat |
214 |
Q |
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||||||||||| |||||||| |||||||| || ||||||||||| ||| |||| |
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| T |
8696048 |
gctaaaaggacaagtgttaacagagtggcgggaacaatggagacaaaagcaat |
8695996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 10113783 - 10114004
Alignment:
| Q |
17 |
tgatccgatacgtagttgtgttagcaaaaattttctcccaaaggtcatgtttttggctgccgtagctcgcccaagatttgattcacatagaaatgtaaca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10113783 |
tgatccgatacgtagttgtgttagcaaaaattttctcccaaaggtcatgtttttggctgccgtagctcgcccaagatttgattcacatagaaatgtaaca |
10113882 |
T |
|
| Q |
117 |
tttgatggaaaaattggcgtctttccttttgtcataagagagtctgctaaaaggactagtgttaatagagtggctggtacaatggagactaaaccaatcc |
216 |
Q |
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|
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10113883 |
ttcgatggaaaaattggcgtctttccttttgtcataagagagcctgctaaaaggactagtgttaatagagtggctggtacaatggagactaaaccaatcc |
10113982 |
T |
|
| Q |
217 |
tttcagtcactagagctattat |
238 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
10113983 |
tttcagtcactagagctattat |
10114004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 34223837 - 34223785
Alignment:
| Q |
162 |
gctaaaaggactagtgttaatagagtggctggtacaatggagactaaaccaat |
214 |
Q |
| |
|
||||||||||| |||||||| |||||||| || ||||||||||| ||| |||| |
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|
| T |
34223837 |
gctaaaaggacaagtgttaacagagtggcgggaacaatggagacaaaagcaat |
34223785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 33021995 - 33021774
Alignment:
| Q |
17 |
tgatccgatacgtagttgtgttagcaaaaattttctcccaaaggtcatgtttttggctgccgtagctcgcccaagatttgattcacatagaaatgtaaca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33021995 |
tgatccgatacgtagttgtgttagcaaaaattttctcccaaaggtcatgtttttggctgccgtagctcgcccaagatttgattcacatagaaatgtaaca |
33021896 |
T |
|
| Q |
117 |
tttgatggaaaaattggcgtctttccttttgtcataagagagtctgctaaaaggactagtgttaatagagtggctggtacaatggagactaaaccaatcc |
216 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33021895 |
ttcgatggaaaaattggcgtctttccttttgtcataagagagcctgctaaaaggactagtgttaatagagtggctggtacaatggagactaaaccaatcc |
33021796 |
T |
|
| Q |
217 |
tttcagtcactagagctattat |
238 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
33021795 |
tttcagtcactagagctattat |
33021774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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