View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12099_low_2 (Length: 557)

Name: NF12099_low_2
Description: NF12099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12099_low_2
NF12099_low_2
[»] chr8 (14 HSPs)
chr8 (211-375)||(17683697-17683861)
chr8 (211-375)||(17664541-17664705)
chr8 (211-356)||(39837482-39837627)
chr8 (209-345)||(4839713-4839849)
chr8 (211-346)||(17973565-17973700)
chr8 (210-340)||(39845541-39845671)
chr8 (211-356)||(30938282-30938427)
chr8 (211-346)||(25579742-25579877)
chr8 (211-356)||(1406993-1407138)
chr8 (211-339)||(26873541-26873669)
chr8 (211-339)||(26875991-26876119)
chr8 (472-523)||(17664393-17664444)
chr8 (472-523)||(17683549-17683600)
chr8 (211-305)||(4582204-4582298)
[»] chr2 (24 HSPs)
chr2 (209-375)||(20372214-20372380)
chr2 (211-375)||(20621518-20621682)
chr2 (211-356)||(14582925-14583070)
chr2 (211-356)||(15944477-15944622)
chr2 (211-356)||(15952992-15953137)
chr2 (211-356)||(35138593-35138738)
chr2 (211-356)||(35146929-35147074)
chr2 (211-356)||(41233764-41233909)
chr2 (211-356)||(38168277-38168422)
chr2 (211-356)||(42565849-42565994)
chr2 (211-356)||(42574473-42574618)
chr2 (239-356)||(35037884-35038001)
chr2 (211-320)||(44372705-44372814)
chr2 (211-320)||(44388616-44388725)
chr2 (211-305)||(17687369-17687463)
chr2 (211-322)||(25483601-25483712)
chr2 (211-322)||(25491207-25491318)
chr2 (472-523)||(20621788-20621839)
chr2 (211-336)||(35303737-35303862)
chr2 (210-305)||(27606616-27606710)
chr2 (211-305)||(24285696-24285790)
chr2 (211-305)||(42249426-42249520)
chr2 (260-337)||(18989312-18989389)
chr2 (211-305)||(34070575-34070669)
[»] chr5 (20 HSPs)
chr5 (17-211)||(22042553-22042746)
chr5 (211-357)||(29186197-29186343)
chr5 (210-346)||(20398565-20398701)
chr5 (211-346)||(20372843-20372978)
chr5 (211-356)||(1728079-1728224)
chr5 (210-356)||(43597966-43598112)
chr5 (210-356)||(43603458-43603604)
chr5 (210-356)||(43608950-43609096)
chr5 (211-356)||(24956766-24956911)
chr5 (211-356)||(24965229-24965374)
chr5 (211-346)||(23350006-23350141)
chr5 (210-356)||(28843939-28844085)
chr5 (211-356)||(28852550-28852695)
chr5 (211-343)||(31410890-31411022)
chr5 (211-338)||(31421789-31421916)
chr5 (211-322)||(19223555-19223666)
chr5 (290-336)||(17638318-17638364)
chr5 (290-336)||(23028007-23028053)
chr5 (289-335)||(23037923-23037969)
chr5 (477-523)||(19223811-19223857)
[»] scaffold0156 (1 HSPs)
scaffold0156 (211-346)||(35286-35421)
[»] chr7 (12 HSPs)
chr7 (211-356)||(10439937-10440082)
chr7 (211-356)||(4952317-4952462)
chr7 (211-356)||(13831500-13831645)
chr7 (211-356)||(13839531-13839676)
chr7 (211-356)||(18304312-18304457)
chr7 (211-356)||(12978455-12978600)
chr7 (211-336)||(21662962-21663088)
chr7 (211-305)||(30244775-30244869)
chr7 (211-272)||(4941581-4941642)
chr7 (211-305)||(30255413-30255506)
chr7 (282-337)||(1955691-1955746)
chr7 (211-305)||(30245568-30245662)
[»] chr4 (14 HSPs)
chr4 (211-356)||(27343611-27343756)
chr4 (211-356)||(4523600-4523745)
chr4 (211-356)||(12996476-12996621)
chr4 (211-346)||(8094212-8094347)
chr4 (211-346)||(8103018-8103153)
chr4 (211-357)||(21532224-21532369)
chr4 (211-339)||(52295604-52295732)
chr4 (211-336)||(12428418-12428543)
chr4 (211-337)||(33188766-33188891)
chr4 (211-284)||(10638328-10638400)
chr4 (311-356)||(10638406-10638451)
chr4 (266-305)||(12402907-12402946)
chr4 (211-336)||(3424331-3424454)
chr4 (290-335)||(25249599-25249644)
[»] chr3 (23 HSPs)
chr3 (211-356)||(8154564-8154709)
chr3 (210-356)||(50824351-50824497)
chr3 (210-356)||(50851363-50851509)
chr3 (211-356)||(41006556-41006701)
chr3 (211-356)||(41015336-41015481)
chr3 (211-346)||(14538534-14538670)
chr3 (210-357)||(28470137-28470283)
chr3 (211-356)||(27341254-27341400)
chr3 (211-356)||(2211239-2211384)
chr3 (211-346)||(9525364-9525499)
chr3 (211-346)||(9555038-9555173)
chr3 (211-336)||(17933655-17933780)
chr3 (211-336)||(17919199-17919324)
chr3 (213-337)||(43470492-43470615)
chr3 (211-336)||(16816145-16816268)
chr3 (211-275)||(17628265-17628329)
chr3 (211-305)||(21186747-21186841)
chr3 (215-305)||(18349560-18349650)
chr3 (211-306)||(18039011-18039106)
chr3 (211-305)||(30447-30541)
chr3 (211-305)||(8197667-8197761)
chr3 (290-337)||(31276593-31276640)
chr3 (296-337)||(16288692-16288733)
[»] chr1 (14 HSPs)
chr1 (211-356)||(3432810-3432955)
chr1 (211-356)||(31539954-31540099)
chr1 (211-356)||(31548523-31548668)
chr1 (211-346)||(32137684-32137819)
chr1 (211-356)||(35103984-35104129)
chr1 (211-346)||(41746622-41746758)
chr1 (211-336)||(29221429-29221553)
chr1 (211-336)||(44320132-44320257)
chr1 (284-336)||(28457629-28457681)
chr1 (253-335)||(51058330-51058411)
chr1 (211-305)||(21498869-21498963)
chr1 (283-336)||(8241438-8241491)
chr1 (290-334)||(13462775-13462819)
chr1 (290-335)||(22460026-22460071)
[»] chr6 (17 HSPs)
chr6 (211-346)||(33298085-33298219)
chr6 (211-340)||(15391547-15391676)
chr6 (210-356)||(5004060-5004206)
chr6 (211-346)||(13825703-13825838)
chr6 (211-346)||(30824459-30824594)
chr6 (210-356)||(35091596-35091742)
chr6 (210-346)||(25550294-25550430)
chr6 (211-356)||(11279837-11279982)
chr6 (211-339)||(5994699-5994827)
chr6 (213-356)||(25991852-25991995)
chr6 (211-356)||(25506461-25506606)
chr6 (211-356)||(23925335-23925481)
chr6 (270-347)||(26526631-26526708)
chr6 (211-302)||(13490193-13490284)
chr6 (210-263)||(5489132-5489185)
chr6 (211-303)||(11053702-11053794)
chr6 (278-337)||(14894939-14894998)
[»] scaffold0111 (1 HSPs)
scaffold0111 (211-356)||(33035-33180)
[»] scaffold0209 (1 HSPs)
scaffold0209 (211-356)||(4-149)
[»] scaffold0083 (1 HSPs)
scaffold0083 (211-339)||(15813-15941)
[»] scaffold0002 (1 HSPs)
scaffold0002 (211-346)||(121228-121363)
[»] scaffold0497 (1 HSPs)
scaffold0497 (211-337)||(10993-11119)
[»] scaffold0632 (1 HSPs)
scaffold0632 (211-339)||(4390-4518)
[»] scaffold0016 (1 HSPs)
scaffold0016 (211-346)||(23464-23600)
[»] scaffold0173 (1 HSPs)
scaffold0173 (211-346)||(859-994)
[»] scaffold0039 (1 HSPs)
scaffold0039 (211-322)||(40787-40898)
[»] scaffold0431 (1 HSPs)
scaffold0431 (211-336)||(139-264)
[»] scaffold0170 (1 HSPs)
scaffold0170 (211-337)||(7129-7255)
[»] scaffold0222 (1 HSPs)
scaffold0222 (211-336)||(20422-20547)
[»] scaffold0027 (2 HSPs)
scaffold0027 (279-357)||(65622-65701)
scaffold0027 (483-523)||(65470-65510)
[»] scaffold0315 (1 HSPs)
scaffold0315 (281-337)||(10595-10651)
[»] scaffold0015 (1 HSPs)
scaffold0015 (211-306)||(192528-192623)
[»] scaffold0290 (1 HSPs)
scaffold0290 (260-337)||(15760-15837)
[»] scaffold0991 (1 HSPs)
scaffold0991 (211-304)||(345-438)
[»] scaffold0048 (2 HSPs)
scaffold0048 (311-344)||(7587-7620)
scaffold0048 (210-283)||(7622-7695)
[»] scaffold0044 (2 HSPs)
scaffold0044 (211-304)||(81758-81851)
scaffold0044 (211-305)||(65509-65603)
[»] scaffold0007 (1 HSPs)
scaffold0007 (290-337)||(61371-61418)
[»] scaffold0863 (1 HSPs)
scaffold0863 (211-305)||(343-437)
[»] scaffold1380 (1 HSPs)
scaffold1380 (296-337)||(556-597)


Alignment Details
Target: chr8 (Bit Score: 133; Significance: 7e-69; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 211 - 375
Target Start/End: Complemental strand, 17683861 - 17683697
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||    
T  17683861 tgtcataccccaaattttgaccacttttctctatccttgcccattttattcgtatttttagagtcgggaattttcgtcgtttcagacgaaattttgacaa 17683762  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagacccttctctttcccattattttc 375  Q
    ||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  17683761 agaagttactttgaagtacctcattttttattccgagtcggacccttctctttcccattattttc 17683697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 211 - 375
Target Start/End: Complemental strand, 17664705 - 17664541
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||  ||||    
T  17664705 tgtcataccccaaattttgaccacttttctctatccttgcccattttattcgtatttttagagtcgggaattttcatcgtttcagacgaaattttgacaa 17664606  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagacccttctctttcccattattttc 375  Q
    ||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  17664605 agaagttactttgaagtacctcattttttattccgagtcggacccttctctttcccattattttc 17664541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 211 - 356
Target Start/End: Complemental strand, 39837627 - 39837482
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| ||||||||||||||||| |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  39837627 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 39837528  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  39837527 agaggttactttgaagtacctcattttttattccgagtcggaccct 39837482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 209 - 345
Target Start/End: Complemental strand, 4839849 - 4839713
Alignment:
Q  209 tatgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaac 308  Q
    ||||||||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4839849 tatgtcataccccaaattttgaccgcttttctctattcttacctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgac 4839750  T
Q  309 aaagaggttactttgaagtacctcattttttattccg 345  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  4839749 aaagaagttactttgaagtacctcatttttgattccg 4839713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 211 - 346
Target Start/End: Original strand, 17973565 - 17973700
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||     
T  17973565 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcag 17973664  T
Q  311 agaggttactttgaagtacctcattttttattccga 346  Q
    ||||||||||||||||||||||||||||||||||||    
T  17973665 agaggttactttgaagtacctcattttttattccga 17973700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 210 - 340
Target Start/End: Complemental strand, 39845671 - 39845541
Alignment:
Q  210 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 309  Q
    |||||||||| ||||||||||||||||| |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  39845671 atgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgaca 39845572  T
Q  310 aagaggttactttgaagtacctcatttttta 340  Q
    |||||||||||||||||||||||||||||||    
T  39845571 aagaggttactttgaagtacctcatttttta 39845541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 211 - 356
Target Start/End: Original strand, 30938282 - 30938427
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  30938282 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 30938381  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  30938382 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 30938427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 211 - 346
Target Start/End: Complemental strand, 25579877 - 25579742
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    |||||||||  ||||||||||||||||| ||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  25579877 tgtcataccctaaattttgaccacttttatctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 25579778  T
Q  311 agaggttactttgaagtacctcattttttattccga 346  Q
    ||||||||||||||||||||||||||||||||||||    
T  25579777 agaggttactttgaagtacctcattttttattccga 25579742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 211 - 356
Target Start/End: Complemental strand, 1407138 - 1406993
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||| | ||||||||| |||||||||||||||||   |||    
T  1407138 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgtgaattttcgccgtttcagacgaaattttggcaa 1407039  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  1407038 agaggttactttgaagtacctcattttttattccgagtcggaccct 1406993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 211 - 339
Target Start/End: Complemental strand, 26873669 - 26873541
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||| ||||    
T  26873669 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttgtaatgtcggaaattttcgtcgtttcagacgaaatttcgacaa 26873570  T
Q  311 agaggttactttgaagtacctcatttttt 339  Q
    |||||||||||| |||||||| |||||||    
T  26873569 agaggttactttaaagtaccttatttttt 26873541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 211 - 339
Target Start/End: Complemental strand, 26876119 - 26875991
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||| ||||| |||||| |||||||||||||||||||| ||||    
T  26876119 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaatgtcggaaatttttgtcgtttcagacgaaatttcgacaa 26876020  T
Q  311 agaggttactttgaagtacctcatttttt 339  Q
    |||||||||||| || |||||||||||||    
T  26876019 agaggttactttaaaatacctcatttttt 26875991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 472 - 523
Target Start/End: Complemental strand, 17664444 - 17664393
Alignment:
Q  472 ctgtacaatgttgtcaataagtccgaaggttttcggcagtggtccaaatttc 523  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17664444 ctgtacaatgttgtcaataagtccgaaggttttctgcagtggtccaaatttc 17664393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 472 - 523
Target Start/End: Complemental strand, 17683600 - 17683549
Alignment:
Q  472 ctgtacaatgttgtcaataagtccgaaggttttcggcagtggtccaaatttc 523  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17683600 ctgtacaatgttgtcaataagtccgaaggttttctgcagtggtccaaatttc 17683549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 305
Target Start/End: Original strand, 4582204 - 4582298
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 305  Q
    |||||||||| |||||||||||||||||||||||  || |  ||||| ||| || |||||||  ||| ||| | |||| ||| ||||||||||||    
T  4582204 tgtcataccttaaattttgaccacttttctctatttttacacattttgttcatacttttaaaaccggaaatgtccgtcattttagacgaaatttc 4582298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 7e-66; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 209 - 375
Target Start/End: Complemental strand, 20372380 - 20372214
Alignment:
Q  209 tatgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaac 308  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  20372380 tatgtcataccccaaattttgaccacttttctctatccttgcccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcgac 20372281  T
Q  309 aaagaggttactttgaagtacctca-ttttttattccgaatcagacccttctctttcccattattttc 375  Q
    ||| ||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||    
T  20372280 aaa-aggttactttgaagtacctcatttttttattccgagtcggacccttctctttcccattattttc 20372214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 211 - 375
Target Start/End: Original strand, 20621518 - 20621682
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| ||||    
T  20621518 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtgtttttgaagtcgggaattttcgtcgtttcagacaaaatttcgacaa 20621617  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagacccttctctttcccattattttc 375  Q
    ||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  20621618 agatgttactttgaagtacctcattttttattctgagtcagacccttctctttcccattattttc 20621682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 211 - 356
Target Start/End: Original strand, 14582925 - 14583070
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  14582925 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 14583024  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  14583025 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 14583070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 211 - 356
Target Start/End: Complemental strand, 15944622 - 15944477
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  15944622 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 15944523  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  15944522 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 15944477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 211 - 356
Target Start/End: Complemental strand, 15953137 - 15952992
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  15953137 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 15953038  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  15953037 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 15952992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 211 - 356
Target Start/End: Original strand, 35138593 - 35138738
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  35138593 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 35138692  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  35138693 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 35138738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 211 - 356
Target Start/End: Original strand, 35146929 - 35147074
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  35146929 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 35147028  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  35147029 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 35147074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 211 - 356
Target Start/End: Complemental strand, 41233909 - 41233764
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  41233909 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 41233810  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  41233809 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 41233764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 211 - 356
Target Start/End: Complemental strand, 38168422 - 38168277
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||  |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  38168422 tgtcatactccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 38168323  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  38168322 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 38168277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 211 - 356
Target Start/End: Complemental strand, 42565994 - 42565849
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||| | ||||||||| |||||||||||||||||   |||    
T  42565994 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 42565895  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  42565894 agaggttactttgaagtacctcattttttattccgagtcggaccct 42565849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 211 - 356
Target Start/End: Complemental strand, 42574618 - 42574473
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||| | ||||||||| |||||||||||||||||   |||    
T  42574618 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 42574519  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  42574518 agaggttactttgaagtacctcattttttattccgagtcggaccct 42574473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 239 - 356
Target Start/End: Original strand, 35037884 - 35038001
Alignment:
Q  239 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 338  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| ||||||||||||    
T  35037884 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgatagagaggttactttgaaatacctcattttt 35037983  T
Q  339 tattccgaatcagaccct 356  Q
    |||||||| |||| ||||    
T  35037984 tattccgagtcaggccct 35038001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 211 - 320
Target Start/End: Original strand, 44372705 - 44372814
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||| |||||| || || |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  44372705 tgtcataccccaaattttgaccacttttttctatctttacccattttattcgtatttttaaagtcgggaattttcgtcgtttaagacgaaatttcgacaa 44372804  T
Q  311 agaggttact 320  Q
    ||||||||||    
T  44372805 agaggttact 44372814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 211 - 320
Target Start/End: Original strand, 44388616 - 44388725
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||| |||||| || || |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  44388616 tgtcataccccaaattttgaccacttttttctatctttacccattttattcgtatttttaaagtcgggaattttcgtcgtttaagacgaaatttcgacaa 44388715  T
Q  311 agaggttact 320  Q
    ||||||||||    
T  44388716 agaggttact 44388725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 211 - 305
Target Start/End: Complemental strand, 17687463 - 17687369
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 305  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17687463 tgtcataccccaaattttgaccacttttctctattcttacccattttattcatatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 17687369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 211 - 322
Target Start/End: Original strand, 25483601 - 25483712
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| |||  | |||||||| ||||||||||||||| ||||||||||||||||||||||||| || |||     
T  25483601 tgtcataccccaaattttgaccacttttctctattcttatccattttatttgtatttttaaagtcgagaattttcgtcgtttcagacgaaatctcgacag 25483700  T
Q  311 agaggttacttt 322  Q
    ||||||||||||    
T  25483701 agaggttacttt 25483712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 211 - 322
Target Start/End: Original strand, 25491207 - 25491318
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| |||  | |||||||| ||||||||||||||| ||||||||||||||||||||||||| || |||     
T  25491207 tgtcataccccaaattttgaccacttttctctattcttatccattttatttgtatttttaaagtcgagaattttcgtcgtttcagacgaaatctcgacag 25491306  T
Q  311 agaggttacttt 322  Q
    ||||||||||||    
T  25491307 agaggttacttt 25491318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 472 - 523
Target Start/End: Original strand, 20621788 - 20621839
Alignment:
Q  472 ctgtacaatgttgtcaataagtccgaaggttttcggcagtggtccaaatttc 523  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20621788 ctgtacaatgttgtcaataagtccgaaggttttcggcagtggtccaaatttc 20621839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 211 - 336
Target Start/End: Original strand, 35303737 - 35303862
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| ||||||||||| | ||||||||    || ||  |||||||| |||||| |||| |  ||| ||||||||||||||||||||||||  ||     
T  35303737 tgtcataccccaaattttgactatttttctctgattttaccccttttattcttattttaaaagccaagaaatttcgtcgtttcagacgaaatttcggcag 35303836  T
Q  311 agaggttactttgaagtacctcattt 336  Q
    |||||||| |||||||||||||||||    
T  35303837 agaggttaatttgaagtacctcattt 35303862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 210 - 305
Target Start/End: Complemental strand, 27606710 - 27606616
Alignment:
Q  210 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 305  Q
    |||||||||  ||||||||||| ||||||||||||  ||  | |||||||||||| |||||||| |||||||||| ||||| ||||||||||||||    
T  27606710 atgtcatactccaaattttgactacttttctctatttttatcaattttattcgtacttttaaagacgggaatttt-gtcgtctcagacgaaatttc 27606616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 305
Target Start/End: Original strand, 24285696 - 24285790
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 305  Q
    ||||||||| |||||||||||||||||||| |||  || |  ||||| |||||| |||||||   || ||||| |||||||| ||||||||||||    
T  24285696 tgtcataccccaaattttgaccacttttctttatttttacacattttgttcgtacttttaaaactggaaatttccgtcgtttaagacgaaatttc 24285790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 305
Target Start/End: Complemental strand, 42249520 - 42249426
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 305  Q
    ||||||||| ||||||||||||||||||||||||  || |  ||||  |||||| ||||||| |||  ||| | |||||||| ||||||||||||    
T  42249520 tgtcataccccaaattttgaccacttttctctatttttacacatttcgttcgtacttttaaaatcgaaaatgtccgtcgttttagacgaaatttc 42249426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 260 - 337
Target Start/End: Complemental strand, 18989389 - 18989312
Alignment:
Q  260 tcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 337  Q
    |||| ||||||||| |||||||||| ||||  |||||||||||| |   | |||||||||||| ||||||||||||||    
T  18989389 tcgtctttttaaagccgggaatttttgtcgcatcagacgaaattacggtagagaggttactttcaagtacctcatttt 18989312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 305
Target Start/End: Complemental strand, 34070669 - 34070575
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 305  Q
    ||||||||| |||||||||| |||||||||||||  || |  ||||| |||||| |||||||  ||| ||| | |||||||| |||| |||||||    
T  34070669 tgtcataccccaaattttgatcacttttctctatttttacacattttgttcgtacttttaaaaccggtaatgtccgtcgttttagacaaaatttc 34070575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 3e-65; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 22042553 - 22042746
Alignment:
Q  17 tgtgcacattgaagaagtataacaacactgcagagtagtaaaacaaaataaaattagcagttaggaaaactgaaaatatagaatacctgatatggaagat 116  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||| |    |  ||||||||||||| |||||||||||||||||||||||||||||||    
T  22042553 tgtgcacattgaagaagtataacaacagtgcagagtagtataacaacagtgcag-agcagttaggaaagctgaaaatatagaatacctgatatggaagat 22042651  T
Q  117 gtacagtttcaaaacctcccagaacttgtcttttaagcacatcacgatatccagccatttcaagtggaaagagtagttaaagatgatgtagttat 211  Q
    ||||||||||||||||||| |||| |||||||||||| ||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  22042652 gtacagtttcaaaacctcctagaatttgtcttttaagtacaacacgatatccagccatttgaagtggaaagagttgttaaagatgatgtagttat 22042746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 211 - 357
Target Start/End: Complemental strand, 29186343 - 29186197
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29186343 tgtcataccccaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaa 29186244  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccctt 357  Q
    ||||||||||||||||| |||||||||||||||||| || |||||||    
T  29186243 agaggttactttgaagtgcctcattttttattccgagtcggaccctt 29186197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 210 - 346
Target Start/End: Complemental strand, 20398701 - 20398565
Alignment:
Q  210 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 309  Q
    |||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  20398701 atgtcataccccaaattttgaccacttttctctattcttaccgattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgaca 20398602  T
Q  310 aagaggttactttgaagtacctcattttttattccga 346  Q
     ||||||||||||||||||||||||||||||||||||    
T  20398601 gagaggttactttgaagtacctcattttttattccga 20398565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 211 - 346
Target Start/End: Complemental strand, 20372978 - 20372843
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  20372978 tgtcataccccaaattttgaccacttttctctattcttaccgattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacag 20372879  T
Q  311 agaggttactttgaagtacctcattttttattccga 346  Q
    ||||||||||||||||||||||||||||||||||||    
T  20372878 agaggttactttgaagtacctcattttttattccga 20372843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 211 - 356
Target Start/End: Complemental strand, 1728224 - 1728079
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||    
T  1728224 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttgacaa 1728125  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  1728124 agaggttactttgaagtacctcattttttattccgagtcggaccct 1728079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 210 - 356
Target Start/End: Complemental strand, 43598112 - 43597966
Alignment:
Q  210 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 309  Q
    |||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||   ||    
T  43598112 atgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttggca 43598013  T
Q  310 aagaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||    
T  43598012 aagaggttactttgaagtacctcattttttattccgagtcggaccct 43597966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 210 - 356
Target Start/End: Complemental strand, 43603604 - 43603458
Alignment:
Q  210 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 309  Q
    |||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||   ||    
T  43603604 atgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttggca 43603505  T
Q  310 aagaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||    
T  43603504 aagaggttactttgaagtacctcattttttattccgagtcggaccct 43603458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 210 - 356
Target Start/End: Complemental strand, 43609096 - 43608950
Alignment:
Q  210 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 309  Q
    |||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||   ||    
T  43609096 atgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttggca 43608997  T
Q  310 aagaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||    
T  43608996 aagaggttactttgaagtacctcattttttattccgagtcggaccct 43608950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 211 - 356
Target Start/End: Complemental strand, 24956911 - 24956766
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  24956911 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 24956812  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  24956811 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 24956766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 211 - 356
Target Start/End: Complemental strand, 24965374 - 24965229
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  24965374 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 24965275  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  24965274 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 24965229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 211 - 346
Target Start/End: Complemental strand, 23350141 - 23350006
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| ||||||||||||| ||||||||||  || || |||||||||||||||||||||||||||||| ||||| ||||||||||||||||  |||    
T  23350141 tgtcataccccaaattttgaccatttttctctatttttacccattttattcgtatttttaaagtcgggaattctcgtcatttcagacgaaatttcggcaa 23350042  T
Q  311 agaggttactttgaagtacctcattttttattccga 346  Q
    ||||||||||||||||||||||||||||||||||||    
T  23350041 agaggttactttgaagtacctcattttttattccga 23350006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 210 - 356
Target Start/End: Original strand, 28843939 - 28844085
Alignment:
Q  210 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 309  Q
    |||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||| | ||||||||| |||||||||||||||||   ||    
T  28843939 atgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggca 28844038  T
Q  310 aagaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||    
T  28844039 aagaggttactttgaagtacctcattttttattccgagtcggaccct 28844085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 211 - 356
Target Start/End: Original strand, 28852550 - 28852695
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||| | ||||||||| |||||||||||||||||   |||    
T  28852550 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 28852649  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  28852650 agaggttactttgaagtacctcattttttattccgagtcggaccct 28852695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 211 - 343
Target Start/End: Original strand, 31410890 - 31411022
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||| ||||||||| ||  || ||||||||||||||||||||||  |||||||||||||||| | |||||||||| ||||    
T  31410890 tgtcataccccaaattttgaccacatttctctattctaacccattttattcgtatttttaaagttaggaattttcgtcgtttaaaacgaaatttcgacaa 31410989  T
Q  311 agaggttactttgaagtacctcattttttattc 343  Q
    |||||||||||||||||||||||||||||||||    
T  31410990 agaggttactttgaagtacctcattttttattc 31411022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 211 - 338
Target Start/End: Original strand, 31421789 - 31421916
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    |||||||||  ||||||||||||||||||||||| ||| || ||||||||||||||||| ||||||| ||||||||||||||||||| ||||||| ||||    
T  31421789 tgtcatacccaaaattttgaccacttttctctattcttacccattttattcgtatttttgaagtcggaaattttcgtcgtttcagacaaaatttcgacaa 31421888  T
Q  311 agaggttactttgaagtacctcattttt 338  Q
    ||| ||||||||||||||||||||||||    
T  31421889 agatgttactttgaagtacctcattttt 31421916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 211 - 322
Target Start/End: Original strand, 19223555 - 19223666
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| |||  | |||||||| ||||||||||||||| ||||| ||||||||||||| ||||| || |||     
T  19223555 tgtcataccccaaattttgaccacttttctctattcttatccattttatttgtatttttaaagtcgagaattgtcgtcgtttcagatgaaatctcgacag 19223654  T
Q  311 agaggttacttt 322  Q
    ||||||||||||    
T  19223655 agaggttacttt 19223666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 17638318 - 17638364
Alignment:
Q  290 tttcagacgaaatttcaacaaagaggttactttgaagtacctcattt 336  Q
    ||||| |||||||||| ||| ||||||||||||||||||||||||||    
T  17638318 tttcaaacgaaatttcgacagagaggttactttgaagtacctcattt 17638364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 23028053 - 23028007
Alignment:
Q  290 tttcagacgaaatttcaacaaagaggttactttgaagtacctcattt 336  Q
    ||||||||||||||||  || ||||||||||||||||||||||||||    
T  23028053 tttcagacgaaatttcggcagagaggttactttgaagtacctcattt 23028007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 335
Target Start/End: Original strand, 23037923 - 23037969
Alignment:
Q  289 gtttcagacgaaatttcaacaaagaggttactttgaagtacctcatt 335  Q
    |||||||||||||||||  || |||||||||||||||||||||||||    
T  23037923 gtttcagacgaaatttcggcagagaggttactttgaagtacctcatt 23037969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 477 - 523
Target Start/End: Original strand, 19223811 - 19223857
Alignment:
Q  477 caatgttgtcaataagtccgaaggttttcggcagtggtccaaatttc 523  Q
    |||||||||||||||||||||| |||||| |||  ||||||||||||    
T  19223811 caatgttgtcaataagtccgaaagttttcagcaagggtccaaatttc 19223857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 116; Significance: 9e-59; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 211 - 346
Target Start/End: Complemental strand, 35421 - 35286
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35421 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaa 35322  T
Q  311 agaggttactttgaagtacctcattttttattccga 346  Q
    ||||||||||||||||||||||||||||||||||||    
T  35321 agaggttactttgaagtacctcattttttattccga 35286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 211 - 356
Target Start/End: Original strand, 10439937 - 10440082
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||     
T  10439937 tgtcataccccaaattttgaccacttttctctattcttgcccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcag 10440036  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||    
T  10440037 agaggttactttaaagtacctcattttttattccgagtcagaccct 10440082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 211 - 356
Target Start/End: Complemental strand, 4952462 - 4952317
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    |||||||||||||||||||||||||||| ||||| ||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||   |||    
T  4952462 tgtcatacctcaaattttgaccacttttatctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaattttggcaa 4952363  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  4952362 agaggttactttgaagtacctcattttttattccgagtcggaccct 4952317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 211 - 356
Target Start/End: Original strand, 13831500 - 13831645
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    |||||||||  |||||||||||||||| |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  13831500 tgtcataccctaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 13831599  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  13831600 agaggttactttgaagtacctcattttttattccgagtcggaccct 13831645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 211 - 356
Target Start/End: Original strand, 13839531 - 13839676
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| ||||||||||||||||| |||||| |||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  13839531 tgtcataccccaaattttgaccactttcctctattcttatccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 13839630  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  13839631 agaggttactttgaagtacctcattttttattccgagtcggaccct 13839676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 211 - 356
Target Start/End: Complemental strand, 18304457 - 18304312
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  18304457 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 18304358  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
    |||||||||||||||||||||||||||||||| ||| || ||||||    
T  18304357 agaggttactttgaagtacctcattttttatttcgagtcggaccct 18304312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 211 - 356
Target Start/End: Original strand, 12978455 - 12978600
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  12978455 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 12978554  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  12978555 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 12978600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 211 - 336
Target Start/End: Complemental strand, 21663088 - 21662962
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtattttt-aaagtcgggaattttcgtcgtttcagacgaaatttcaaca 309  Q
    ||||||||| |||||||||| ||||||| ||| |  || || ||||||||||||||||| |||| || || | |||||||||| ||||||||||||||||    
T  21663088 tgtcataccccaaattttgatcacttttatctgtttttacccattttattcgtattttttaaagccgagagtcttcgtcgttttagacgaaatttcaaca 21662989  T
Q  310 aagaggttactttgaagtacctcattt 336  Q
      |||||||||||||||||||||||||    
T  21662988 gggaggttactttgaagtacctcattt 21662962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 211 - 305
Target Start/End: Original strand, 30244775 - 30244869
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 305  Q
    ||||||||||||||||||||||||||||||||||  ||  | ||||||||||||||||||||||| ||||||||||| ||||||| || ||||||    
T  30244775 tgtcatacctcaaattttgaccacttttctctatttttatccattttattcgtatttttaaagtcaggaattttcgttgtttcagtcgtaatttc 30244869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 4941642 - 4941581
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaa 272  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||    
T  4941642 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaa 4941581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 211 - 305
Target Start/End: Original strand, 30255413 - 30255506
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 305  Q
    ||||||||| ||||||||||||||||||||||||  ||  | ||||||||||||||||| | ||| | ||||||||| ||||||| || ||||||    
T  30255413 tgtcatacc-caaattttgaccacttttctctatttttatccattttattcgtatttttcatgtcagaaattttcgttgtttcagtcgtaatttc 30255506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 282 - 337
Target Start/End: Complemental strand, 1955746 - 1955691
Alignment:
Q  282 tttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 337  Q
    |||||||||||||||| |||||||  || |||||||||||||||| ||||||||||    
T  1955746 tttcgtcgtttcagacaaaatttcggcagagaggttactttgaagcacctcatttt 1955691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 305
Target Start/End: Original strand, 30245568 - 30245662
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 305  Q
    |||||||||  || ||||||||||||||||||||  ||  | ||||||||||||||||| | ||| | ||||||||| ||||||| || ||||||    
T  30245568 tgtcatacccaaatttttgaccacttttctctatttttatccattttattcgtatttttcatgtcagaaattttcgttgtttcagtcgtaatttc 30245662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 211 - 356
Target Start/End: Complemental strand, 27343756 - 27343611
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| ||||||||||||||||||||||||  || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  27343756 tgtcataccccaaattttgaccacttttctctatttttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacag 27343657  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  27343656 agaggttactttgaagtacctcattttttattccgagtcggaccct 27343611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 211 - 356
Target Start/End: Complemental strand, 4523745 - 4523600
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| ||||||||||||||||| |||||| |||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  4523745 tgtcataccccaaattttgaccactttcctctattcttatccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 4523646  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  4523645 agaggttactttgaagtacctcattttttattccgagtcggaccct 4523600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 211 - 356
Target Start/End: Original strand, 12996476 - 12996621
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||   |     
T  12996476 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggtag 12996575  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||    
T  12996576 agaggttactttgaagtacctcattttttattccgagtcagtccct 12996621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 211 - 346
Target Start/End: Complemental strand, 8094347 - 8094212
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||   |||    
T  8094347 tgtcataccccaaattttgaccacttttctctattcttacccattttatttgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 8094248  T
Q  311 agaggttactttgaagtacctcattttttattccga 346  Q
    |||||||||||||||||||||||||||| |||||||    
T  8094247 agaggttactttgaagtacctcatttttgattccga 8094212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 211 - 346
Target Start/End: Complemental strand, 8103153 - 8103018
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||   |||    
T  8103153 tgtcataccccaaattttgaccacttttctctattcttacccattttatttgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 8103054  T
Q  311 agaggttactttgaagtacctcattttttattccga 346  Q
    |||||||||||||||||||||||||||| |||||||    
T  8103053 agaggttactttgaagtacctcatttttgattccga 8103018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 211 - 357
Target Start/End: Complemental strand, 21532369 - 21532224
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| ||||||||||||||||||||||||||||  | ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  21532369 tgtcataccccaaattttgaccacttttctctatccttatccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcgacaa 21532270  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccctt 357  Q
    | || |||||||||||||||||||||||||||| || || |||||||    
T  21532269 a-agattactttgaagtacctcattttttattctgagtcggaccctt 21532224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 211 - 339
Target Start/End: Original strand, 52295604 - 52295732
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||     
T  52295604 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacaaaatttcggcag 52295703  T
Q  311 agaggttactttgaagtacctcatttttt 339  Q
    |||| ||||||||||||||||||||||||    
T  52295704 agagattactttgaagtacctcatttttt 52295732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 211 - 336
Target Start/End: Complemental strand, 12428543 - 12428418
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| ||||||||||||||||||||||||   | || ||||||||||||||||||||| | | |||||||||  |||||||||||||||| || |    
T  12428543 tgtcataccccaaattttgaccacttttctctatttctacccattttattcgtatttttaaagccagaaattttcgttatttcagacgaaatttcgacga 12428444  T
Q  311 agaggttactttgaagtacctcattt 336  Q
    |||| |||||||||||||||||||||    
T  12428443 agagtttactttgaagtacctcattt 12428418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 211 - 337
Target Start/End: Original strand, 33188766 - 33188891
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| ||||||||||| |||||| |||||  ||  |  ||||||| ||||||||||||  | ||||||||||||||||||||||||||||| |||    
T  33188766 tgtcataccccaaattttgacaactttt-tctatttttatcctttttatttgtatttttaaagctgagaattttcgtcgtttcagacgaaatttcagcaa 33188864  T
Q  311 agaggttactttgaagtacctcatttt 337  Q
      ||||||||||||| |||||||||||    
T  33188865 gaaggttactttgaattacctcatttt 33188891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 211 - 284
Target Start/End: Original strand, 10638328 - 10638400
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaatttt 284  Q
    ||||||||| ||||||||||||||||||||||||  || || |||||||||||| |||||||||||||||||||    
T  10638328 tgtcataccccaaattttgaccacttttctctatttttacccattttattcgta-ttttaaagtcgggaatttt 10638400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 311 - 356
Target Start/End: Original strand, 10638406 - 10638451
Alignment:
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  10638406 agaggttactttgaagtacctcattttttattccgagtcggaccct 10638451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 266 - 305
Target Start/End: Original strand, 12402907 - 12402946
Alignment:
Q  266 ttttaaagtcgggaattttcgtcgtttcagacgaaatttc 305  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  12402907 ttttaaagtcaggaattttcgtcgtttcagacgaaatttc 12402946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 336
Target Start/End: Original strand, 3424331 - 3424454
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||| || |||||||||   || ||  |||||||| || ||| |||| |  |||  ||||||||| |||||||||||||  ||     
T  3424331 tgtcataccccaaattttgatcatttttctctaattttaccccttttattcttactttaaaagccaagaaagttcgtcgttccagacgaaatttcggca- 3424429  T
Q  311 agaggttactttgaagtacctcattt 336  Q
     |||||||||||||||||||||||||    
T  3424430 -gaggttactttgaagtacctcattt 3424454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 25249644 - 25249599
Alignment:
Q  290 tttcagacgaaatttcaacaaagaggttactttgaagtacctcatt 335  Q
    ||||| ||||||||||||||  |||||||||||| |||||||||||    
T  25249644 tttcaaacgaaatttcaacagggaggttactttggagtacctcatt 25249599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 4e-55; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 211 - 356
Target Start/End: Complemental strand, 8154709 - 8154564
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| ||||||||||||||||| |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  8154709 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 8154610  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  8154609 agaggttactttgaagtacctcattttttattccgagtcggaccct 8154564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 210 - 356
Target Start/End: Original strand, 50824351 - 50824497
Alignment:
Q  210 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 309  Q
    |||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||    
T  50824351 atgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggca 50824450  T
Q  310 aagaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
     |||||||||||||||||||||||||||||||||||| || ||||||    
T  50824451 gagaggttactttgaagtacctcattttttattccgagtcggaccct 50824497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 210 - 356
Target Start/End: Complemental strand, 50851509 - 50851363
Alignment:
Q  210 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 309  Q
    |||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||    
T  50851509 atgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggca 50851410  T
Q  310 aagaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
     |||||||||||||||||||||||||||||||||||| || ||||||    
T  50851409 gagaggttactttgaagtacctcattttttattccgagtcggaccct 50851363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 211 - 356
Target Start/End: Original strand, 41006556 - 41006701
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| ||||||||||||| |||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  41006556 tgtcataccccaaattttgaccatttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 41006655  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  41006656 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 41006701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 211 - 356
Target Start/End: Original strand, 41015336 - 41015481
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| ||||||||||||| |||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  41015336 tgtcataccccaaattttgaccatttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 41015435  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  41015436 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 41015481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 211 - 346
Target Start/End: Complemental strand, 14538670 - 14538534
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaac-a 309  Q
    ||||||||| |||||||||||||||||||||||| |||  | ||||||||| |||||||||||||||||||||||||||||||||||||||||||  | |    
T  14538670 tgtcataccccaaattttgaccacttttctctattcttatccattttattcatatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcaa 14538571  T
Q  310 aagaggttactttgaagtacctcattttttattccga 346  Q
    |||||||||||||||||||||||||||||||||||||    
T  14538570 aagaggttactttgaagtacctcattttttattccga 14538534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 210 - 357
Target Start/End: Complemental strand, 28470283 - 28470137
Alignment:
Q  210 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 309  Q
    |||||||||| ||||||||||||||||||||||||||||  | ||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||    
T  28470283 atgtcataccccaaattttgaccacttttctctatccttatccattttattcgtatttttaaagtcagaaattttcgtcgtttcagacgaaatttcgaca 28470184  T
Q  310 aagaggttactttgaagtacctcattttttattccgaatcagaccctt 357  Q
    || || ||||| |||||||||||||||||||||| || || |||||||    
T  28470183 aa-agattactatgaagtacctcattttttattctgagtcggaccctt 28470137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 211 - 356
Target Start/End: Complemental strand, 27341400 - 27341254
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| |||  | ||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||     
T  27341400 tgtcataccccaaattttgaccacttttctctattcttatccattttattcatatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcag 27341301  T
Q  311 agaggttactttgaagtacctcatt-ttttattccgaatcagaccct 356  Q
    | ||||||||||||||||||||||| ||||||||||| |||| ||||    
T  27341300 aaaggttactttgaagtacctcatttttttattccgagtcaggccct 27341254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 211 - 356
Target Start/End: Original strand, 2211239 - 2211384
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    |||||||||  ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||  |||    
T  2211239 tgtcataccctaaattttgaccacttttctctattcttacctattttattcgtatttttaaagtcaggaattttcgtcgtttaagacgaaatttcggcaa 2211338  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
    ||||| || ||| || |||||||||||||||||||| |||| ||||    
T  2211339 agagggtattttaaaatacctcattttttattccgagtcaggccct 2211384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 211 - 346
Target Start/End: Complemental strand, 9525499 - 9525364
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||| ||||||||||||| ||| || ||||||||||||||||||||||||||||||||||| |||| ||||||||||||  ||     
T  9525499 tgtcataccccaaattttgatcacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgttgttttagacgaaatttcggcag 9525400  T
Q  311 agaggttactttgaagtacctcattttttattccga 346  Q
    | |||||||||| || ||||||||||||||||||||    
T  9525399 aaaggttactttaaaatacctcattttttattccga 9525364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 211 - 346
Target Start/End: Complemental strand, 9555173 - 9555038
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||| ||||||||||||| ||| || |||||| |||||||||||||||||||||||||||| |||| ||||||||||||  ||     
T  9555173 tgtcataccccaaattttgatcacttttctctattcttacccattttactcgtatttttaaagtcgggaattttcgttgttttagacgaaatttcggcag 9555074  T
Q  311 agaggttactttgaagtacctcattttttattccga 346  Q
    | |||||||||| || ||||||||||||||||||||    
T  9555073 aaaggttactttaaaatacctcattttttattccga 9555038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 211 - 336
Target Start/End: Original strand, 17933655 - 17933780
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| ||||||||||||| ||||||||||  || || ||||||||||||||||||||||||| |||||||||  ||||||||||||||||  |      
T  17933655 tgtcataccccaaattttgaccaattttctctatttttacccattttattcgtatttttaaagtcggaaattttcgttatttcagacgaaatttcttcgg 17933754  T
Q  311 agaggttactttgaagtacctcattt 336  Q
    ||||||||||||||||||||||||||    
T  17933755 agaggttactttgaagtacctcattt 17933780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 211 - 336
Target Start/End: Original strand, 17919199 - 17919324
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| ||||||||||||||||||||||||  ||  | ||||||||||||||||||||| ||  |||||||||  ||||||||||||||||  |      
T  17919199 tgtcataccccaaattttgaccacttttctctatttttatccattttattcgtatttttaaagccgaaaattttcgttatttcagacgaaatttcgtcgg 17919298  T
Q  311 agaggttactttgaagtacctcattt 336  Q
    |||||||||||| |||||||||||||    
T  17919299 agaggttactttaaagtacctcattt 17919324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 213 - 337
Target Start/End: Complemental strand, 43470615 - 43470492
Alignment:
Q  213 tcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaag 312  Q
    ||||||| ||||||||||| |||||| |||||  || ||  |||||||||||||||||||| || |||||||  |||||||||||||||||||  || ||    
T  43470615 tcataccccaaattttgactactttt-tctatttttaccctttttattcgtatttttaaagccgagaattttattcgtttcagacgaaatttcggcagag 43470517  T
Q  313 aggttactttgaagtacctcatttt 337  Q
    |||||||||||||||||||||||||    
T  43470516 aggttactttgaagtacctcatttt 43470492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 211 - 336
Target Start/End: Complemental strand, 16816268 - 16816145
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| ||||||||||||||||||||||||  || |  ||||||||||||||||||||| ||| |||||||||  |||||||||||||||  ||      
T  16816268 tgtcatacc-caaattttgaccacttttctctatttttactcattttattcgtatttttaaagccggaaattttcgttatttcagacgaaattttgacgg 16816170  T
Q  311 agaggttactttgaagtacctcattt 336  Q
    ||||| ||||||||||||||||||||    
T  16816169 agagg-tactttgaagtacctcattt 16816145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 17628265 - 17628329
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtc 275  Q
    ||||||||| |||||||||||||||||||||||| ||| || |||||||||||||||||||||||    
T  17628265 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtc 17628329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 211 - 305
Target Start/End: Original strand, 21186747 - 21186841
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 305  Q
    ||||||||| |||||||||||||||||| ||| |  ||  | |||||||||||| |||||||| || |||||||||| |||||| ||||||||||    
T  21186747 tgtcataccccaaattttgaccacttttatctgtttttatccattttattcgtacttttaaagccgagaattttcgttgtttcaaacgaaatttc 21186841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 215 - 305
Target Start/End: Original strand, 18349560 - 18349650
Alignment:
Q  215 atacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 305  Q
    ||||| ||||||||||| ||||||||||||  || |  |||||||||||| ||||||| |||| ||| | |||||||| ||||||||||||    
T  18349560 ataccccaaattttgacaacttttctctatttttacacattttattcgtacttttaaaatcggaaatgtccgtcgttttagacgaaatttc 18349650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 306
Target Start/End: Original strand, 18039011 - 18039106
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttca 306  Q
    ||||||||| |||||||||||||||||||||  |  || || |||||||||||||||| || | || |||   |||| ||||||||||||||||||    
T  18039011 tgtcataccccaaattttgaccacttttctcgctttttacccattttattcgtattttaaacgccgagaaggatcgttgtttcagacgaaatttca 18039106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 305
Target Start/End: Complemental strand, 30541 - 30447
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 305  Q
    ||||||||| ||||||||||||||||||||||||  || |  ||||| || ||| |||||||  ||| ||| | |||||||| ||||||||||||    
T  30541 tgtcataccccaaattttgaccacttttctctatttttacacattttgtttgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttc 30447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 305
Target Start/End: Complemental strand, 8197761 - 8197667
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 305  Q
    ||||||||| ||||||||||||||||||||||||  || |  ||||| |||||| |||||||  ||| ||| | |||||||| |||| |||||||    
T  8197761 tgtcataccccaaattttgaccacttttctctatttttacacattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacaaaatttc 8197667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 337
Target Start/End: Original strand, 31276593 - 31276640
Alignment:
Q  290 tttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 337  Q
    ||||| |||||||||| ||||  |||||||||||||||||||||||||    
T  31276593 tttcaaacgaaatttcgacaagaaggttactttgaagtacctcatttt 31276640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 16288692 - 16288733
Alignment:
Q  296 acgaaatttcaacaaagaggttactttgaagtacctcatttt 337  Q
    ||||||||||  || |||||||||||||||||||||||||||    
T  16288692 acgaaatttcggcagagaggttactttgaagtacctcatttt 16288733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 4e-55; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 211 - 356
Target Start/End: Complemental strand, 3432955 - 3432810
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| ||||||||||||||||| |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  3432955 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 3432856  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  3432855 agaggttactttgaagtacctcattttttattccgagtcggaccct 3432810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 211 - 356
Target Start/End: Original strand, 31539954 - 31540099
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  31539954 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 31540053  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  31540054 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 31540099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 211 - 356
Target Start/End: Original strand, 31548523 - 31548668
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  31548523 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 31548622  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  31548623 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 31548668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 211 - 346
Target Start/End: Complemental strand, 32137819 - 32137684
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    |||| |||| |||||||||| ||||||||||||| |||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32137819 tgtcttaccccaaattttgatcacttttctctattcttatccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 32137720  T
Q  311 agaggttactttgaagtacctcattttttattccga 346  Q
    | | ||||||||||||||||||||||||||||||||    
T  32137719 ataagttactttgaagtacctcattttttattccga 32137684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 211 - 356
Target Start/End: Complemental strand, 35104129 - 35103984
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| ||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||   |||    
T  35104129 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagttgggaattttcgtcgtttcagacgaaattttggcaa 35104030  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  35104029 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 35103984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 211 - 346
Target Start/End: Complemental strand, 41746758 - 41746622
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaac-a 309  Q
    ||||||| | |||||||||||||||||| ||||| |||  | ||||||||| ||||||||||||||||||||||||||||||||||| |||||||  | |    
T  41746758 tgtcatatcccaaattttgaccacttttatctattcttatccattttattcatatttttaaagtcgggaattttcgtcgtttcagacaaaatttcggcaa 41746659  T
Q  310 aagaggttactttgaagtacctcattttttattccga 346  Q
    |||||||||||||||||||||||||||||||||||||    
T  41746658 aagaggttactttgaagtacctcattttttattccga 41746622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 211 - 336
Target Start/End: Complemental strand, 29221553 - 29221429
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| ||||||||||| ||||||||||||  || || ||||||||||||||||||||||||| ||||||||   ||||||||||||||||  ||     
T  29221553 tgtcataccccaaattttgactacttttctctatttttacccattttattcgtatttttaaagtcggaaattttcgctatttcagacgaaatttcggcag 29221454  T
Q  311 agaggttactttgaagtacctcattt 336  Q
    ||||| || |||||| ||||||||||    
T  29221453 agagg-tattttgaaatacctcattt 29221429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 211 - 336
Target Start/End: Complemental strand, 44320257 - 44320132
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||  |  || || |||||||||||||||| || | || |||   ||||||||||||||||||||||| ||     
T  44320257 tgtcataccccaaattttgaccacttttctcgctttttacccattttattcgtattttaaacgccgagaaggatcgtcgtttcagacgaaatttcagcag 44320158  T
Q  311 agaggttactttgaagtacctcattt 336  Q
     ||||||||||  |||||||||||||    
T  44320157 ggaggttacttgaaagtacctcattt 44320132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 284 - 336
Target Start/End: Original strand, 28457629 - 28457681
Alignment:
Q  284 tcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattt 336  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||| ||||||    
T  28457629 tcgtcgtttcagacgaaatttcgacagagaggttactttgaagtacatcattt 28457681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 253 - 335
Target Start/End: Complemental strand, 51058411 - 51058330
Alignment:
Q  253 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatt 335  Q
    |||||||||||||||||||||  |||||||||||| |||||| ||||||||||| || | ||| || |||||| |||||||||    
T  51058411 attttattcgtatttttaaagctgggaattttcgttgtttcaaacgaaatttcagcagaaagg-tattttgaaatacctcatt 51058330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 305
Target Start/End: Complemental strand, 21498963 - 21498869
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 305  Q
    ||||||||| ||||||||||||||||||||||||  || |  ||||  |||||| |||||||  ||| ||| | |||||||| ||||||||||||    
T  21498963 tgtcataccccaaattttgaccacttttctctatttttacacatttcgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttc 21498869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 283 - 336
Target Start/End: Complemental strand, 8241491 - 8241438
Alignment:
Q  283 ttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattt 336  Q
    |||||||||||||||||||||||   | |||||||||||| |||||||||||||    
T  8241491 ttcgtcgtttcagacgaaatttcggtagagaggttactttaaagtacctcattt 8241438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 334
Target Start/End: Original strand, 13462775 - 13462819
Alignment:
Q  290 tttcagacgaaatttcaacaaagaggttactttgaagtacctcat 334  Q
    |||||||||||||||  | ||||||||||||||||||||||||||    
T  13462775 tttcagacgaaatttggataaagaggttactttgaagtacctcat 13462819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 22460026 - 22460071
Alignment:
Q  290 tttcagacgaaatttcaacaaagaggttactttgaagtacctcatt 335  Q
    ||||| |||||||||| ||| ||||||||||||| |||||||||||    
T  22460026 tttcaaacgaaatttcgacagagaggttactttggagtacctcatt 22460071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 6e-54; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 211 - 346
Target Start/End: Original strand, 33298085 - 33298219
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| ||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33298085 tgtcataccccaacttttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaa 33298184  T
Q  311 agaggttactttgaagtacctcattttttattccga 346  Q
    ||| ||||||||||||||||||||||||||||||||    
T  33298185 aga-gttactttgaagtacctcattttttattccga 33298219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 211 - 340
Target Start/End: Complemental strand, 15391676 - 15391547
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||    
T  15391676 tgtcatatcccaaattttgaccacttttctctatccttgcccattttattcgtatttttaaagccaggaattttcgtcgtttcagacgaaatttcgacaa 15391577  T
Q  311 agaggttactttgaagtacctcatttttta 340  Q
    ||||||||||||||||||||||||||||||    
T  15391576 agaggttactttgaagtacctcatttttta 15391547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 210 - 356
Target Start/End: Original strand, 5004060 - 5004206
Alignment:
Q  210 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 309  Q
    |||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||    
T  5004060 atgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 5004159  T
Q  310 aagaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
    | ||||||||||||||||||||||||||| ||||||| || ||||||    
T  5004160 aggaggttactttgaagtacctcatttttgattccgagtcggaccct 5004206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 211 - 346
Target Start/End: Original strand, 13825703 - 13825838
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||| ||||||||||||| ||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||     
T  13825703 tgtcataccccaaattttgatcacttttctctattcttacccattttattcgtatttttaaagtcaggaattttcgtcgtttcagacgaaatttcgacag 13825802  T
Q  311 agaggttactttgaagtacctcattttttattccga 346  Q
    |||||||||||||||||||||||||||| |||||||    
T  13825803 agaggttactttgaagtacctcatttttgattccga 13825838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 211 - 346
Target Start/End: Complemental strand, 30824594 - 30824459
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||   |||    
T  30824594 tgtcataccccaaattttgaccacttttctctattcttacccattttatttgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 30824495  T
Q  311 agaggttactttgaagtacctcattttttattccga 346  Q
    |||||||||||||||||||||||||||| |||||||    
T  30824494 agaggttactttgaagtacctcatttttgattccga 30824459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 210 - 356
Target Start/End: Complemental strand, 35091742 - 35091596
Alignment:
Q  210 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 309  Q
    |||||||||| |||||||||||||||||||||||| ||| || ||||||||| ||||||||||||||| ||||||||||||||||||||||||||   ||    
T  35091742 atgtcataccccaaattttgaccacttttctctattcttacccattttattcatatttttaaagtcggaaattttcgtcgtttcagacgaaattttggca 35091643  T
Q  310 aagaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
    | ||||||||||||||||||||||||||||||| |||||| ||||||    
T  35091642 aggaggttactttgaagtacctcattttttatttcgaatcggaccct 35091596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 210 - 346
Target Start/End: Original strand, 25550294 - 25550430
Alignment:
Q  210 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 309  Q
    |||||||||| |||||||||||||||||||||||| ||| || ||||||||| |||||||||||||||||||||||||||||||| |||||||||   ||    
T  25550294 atgtcataccccaaattttgaccacttttctctattcttacccattttattcatatttttaaagtcgggaattttcgtcgtttcaaacgaaattttggca 25550393  T
Q  310 aagaggttactttgaagtacctcattttttattccga 346  Q
     ||||||||||||||||||||||||||||||||||||    
T  25550394 gagaggttactttgaagtacctcattttttattccga 25550430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 211 - 356
Target Start/End: Original strand, 11279837 - 11279982
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||| | ||||||||| |||||||||||||||||   |||    
T  11279837 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 11279936  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  11279937 agaggttactttgaagtacctcattttttattccgagtcggaccct 11279982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 211 - 339
Target Start/End: Original strand, 5994699 - 5994827
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||| ||||||||||||||||||| ||||||   |||    
T  5994699 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacaaaattttggcaa 5994798  T
Q  311 agaggttactttgaagtacctcatttttt 339  Q
    |||||||||||||||||||||||||||||    
T  5994799 agaggttactttgaagtacctcatttttt 5994827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 213 - 356
Target Start/End: Original strand, 25991852 - 25991995
Alignment:
Q  213 tcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaag 312  Q
    ||||||| ||||| |||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||   | ||    
T  25991852 tcataccccaaatgttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagaagaaatttcggtagag 25991951  T
Q  313 aggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
    ||||||||||||||||||||||||||||||| || || ||||||    
T  25991952 aggttactttgaagtacctcattttttattcagagtcggaccct 25991995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 211 - 356
Target Start/End: Complemental strand, 25506606 - 25506461
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||| ||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||     
T  25506606 tgtcataccccaaattttgatcacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgttttagacgaaatttcggcag 25506507  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
    |||||||||||| || |||||||||||| ||||||| |||| ||||    
T  25506506 agaggttactttaaaatacctcatttttgattccgagtcaggccct 25506461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 211 - 356
Target Start/End: Original strand, 23925335 - 23925481
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| || |||  |||||||||||   |     
T  23925335 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcatttttgacgaaatttcggtag 23925434  T
Q  311 agaggttactttgaagtacctcatttttt-attccgaatcagaccct 356  Q
    ||| ||||||||||||||||||||||||| ||||||| |||| ||||    
T  23925435 agatgttactttgaagtacctcattttttgattccgagtcaggccct 23925481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 26526708 - 26526631
Alignment:
Q  270 aaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttttattccgaa 347  Q
    ||||||||||||||||||||||||||||||||| ||  || || |||||||||||| ||||||||||||  |||||||    
T  26526708 aaagtcgggaattttcgtcgtttcagacgaaatatcggcagagtggttactttgaattacctcatttttggttccgaa 26526631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 302
Target Start/End: Original strand, 13490193 - 13490284
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaat 302  Q
    ||||||||| ||||||||||||||||||||||||  ||  | ||||||||||||| | ||||  |||||||||||||  |||||||| ||||    
T  13490193 tgtcataccccaaattttgaccacttttctctatttttatccattttattcgtatctgtaaaaccgggaattttcgttatttcagacaaaat 13490284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 210 - 263
Target Start/End: Complemental strand, 5489185 - 5489132
Alignment:
Q  210 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgt 263  Q
    |||||||||| |||||||||||||||||||||||| ||| || |||||||||||    
T  5489185 atgtcataccccaaattttgaccacttttctctattcttacccattttattcgt 5489132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 211 - 303
Target Start/End: Original strand, 11053702 - 11053794
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcc-tattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatt 303  Q
    ||||||||| |||||||||||||||||| |||||  || ||  ||||||||||||||||||||  |  ||||||||||  ||||||||||||||    
T  11053702 tgtcataccccaaattttgaccacttttttctatttttaccaaattttattcgtatttttaaa-accagaattttcgttatttcagacgaaatt 11053794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 337
Target Start/End: Original strand, 14894939 - 14894998
Alignment:
Q  278 gaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 337  Q
    ||||||| |||| ||||||||| |||||  ||||||  ||||||||||||||||||||||    
T  14894939 gaatttttgtcgcttcagacgatatttcggcaaagaaattactttgaagtacctcatttt 14894998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 106; Significance: 9e-53; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 211 - 356
Target Start/End: Original strand, 33035 - 33180
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||    
T  33035 tgtcataccccaaattttgaccacttttctctattcttacccattttatacgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcaa 33134  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
    |||||||||||| ||||||||||||||||||||||| || ||||||    
T  33135 agaggttactttaaagtacctcattttttattccgagtcggaccct 33180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 211 - 356
Target Start/End: Complemental strand, 149 - 4
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||| | ||||||||| |||||||||||||||||   |||    
T  149 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 50  T
Q  311 agaggttactttgaagtacctcattttttattccgaatcagaccct 356  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  49 agaggttactttgaagtacctcattttttattccgagtcggaccct 4  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 211 - 339
Target Start/End: Original strand, 15813 - 15941
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| ||||||||||||||||||||||||  || || ||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||     
T  15813 tgtcataccccaaattttgaccacttttctctatttttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggcag 15912  T
Q  311 agaggttactttgaagtacctcatttttt 339  Q
    |||||||||||||||||||||||||||||    
T  15913 agaggttactttgaagtacctcatttttt 15941  T

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Target: scaffold0002 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 211 - 346
Target Start/End: Original strand, 121228 - 121363
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||   |     
T  121228 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggtag 121327  T
Q  311 agaggttactttgaagtacctcattttttattccga 346  Q
    ||||||||||||||||||  |||||||| |||||||    
T  121328 agaggttactttgaagtaaatcatttttgattccga 121363  T

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Target: scaffold0497 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 211 - 337
Target Start/End: Original strand, 10993 - 11119
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| ||| || |||||||||||||| |||||||||| |||||||||||||||||||||||||||  ||     
T  10993 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtattgttaaagtcggaaattttcgtcgtttcagacgaaatttcggcag 11092  T
Q  311 agaggttactttgaagtacctcatttt 337  Q
    |||||||||||||||||||||||||||    
T  11093 agaggttactttgaagtacctcatttt 11119  T

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Target: scaffold0632 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 211 - 339
Target Start/End: Original strand, 4390 - 4518
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||   |||||||||| ||| || ||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| |||     
T  4390 tgtcataccccaaattttgacattttttctctattcttacccattttattcatatttttaaagtcggtaattttcatcgtttcagacgaaatttcgacag 4489  T
Q  311 agaggttactttgaagtacctcatttttt 339  Q
    |||||||||||||||||||||||||||||    
T  4490 agaggttactttgaagtacctcatttttt 4518  T

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Target: scaffold0016 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 211 - 346
Target Start/End: Original strand, 23464 - 23600
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttt-taaagtcgggaattttcgtcgtttcagacgaaatttcaaca 309  Q
    ||||||||| |||||||||||||||||||||||| ||| || |||||||||||||||| ||||||||||||||||| || |||| |||||||||||   |    
T  23464 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtattttttaaagtcgggaattttcatcatttctgacgaaatttcggta 23563  T
Q  310 aagaggttactttgaagtacctcattttttattccga 346  Q
     |||||||||||||||||||||||||||| |||||||    
T  23564 gagaggttactttgaagtacctcatttttgattccga 23600  T

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Target: scaffold0173 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 211 - 346
Target Start/End: Complemental strand, 994 - 859
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||  ||||||||| ||| || |||||||||||||||||||||  ||||||||||||||||||||||||||||||  ||     
T  994 tgtcataccccaaattttgaccagctttctctattcttacccattttattcgtatttttaaagctgggaattttcgtcgtttcagacgaaatttcggcag 895  T
Q  311 agaggttactttgaagtacctcattttttattccga 346  Q
    | ||||||||||||| |||||||||||| |||||||    
T  894 aaaggttactttgaaatacctcatttttgattccga 859  T

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Target: scaffold0039 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 211 - 322
Target Start/End: Complemental strand, 40898 - 40787
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||||||| |||  | |||||||||||||||||||||||| | |||||| |||||||||||||||| || ||||    
T  40898 tgtcataccccaaattttgaccacttttctctattcttatccattttattcgtatttttaaagtcgagcattttcatcgtttcagacgaaatctcgacaa 40799  T
Q  311 agaggttacttt 322  Q
    ||||||||||||    
T  40798 agaggttacttt 40787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 211 - 336
Target Start/End: Original strand, 139 - 264
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| ||||||||||||||||||||||||   | || ||||||||||||||||||||| | | |||||||||  |||||||||||||||| || |    
T  139 tgtcataccccaaattttgaccacttttctctatttctacccattttattcgtatttttaaagccagaaattttcgttatttcagacgaaatttcgacga 238  T
Q  311 agaggttactttgaagtacctcattt 336  Q
    |||| |||||||||||||||||||||    
T  239 agagtttactttgaagtacctcattt 264  T

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Target: scaffold0170 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 211 - 337
Target Start/End: Complemental strand, 7255 - 7129
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    |||||||||  ||||||||||||||||||||| |  || || |||||||| ||| |||||||| || |||||||||| |||||||||||||||||   |     
T  7255 tgtcataccctaaattttgaccacttttctctgtttttacccattttatttgtacttttaaagccgagaattttcgttgtttcagacgaaatttcgggag 7156  T
Q  311 agaggttactttgaagtacctcatttt 337  Q
      |||||||||||||||||||||||||    
T  7155 gaaggttactttgaagtacctcatttt 7129  T

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Target: scaffold0222 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 211 - 336
Target Start/End: Complemental strand, 20547 - 20422
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 310  Q
    ||||||||| |||||||||||||||||||| |    || |  ||||| |||||| |||||||| || |||||||||| |||||||||||||||||  ||     
T  20547 tgtcataccccaaattttgaccacttttctatggttttacacattttgttcgtacttttaaagccgagaattttcgttgtttcagacgaaatttcggcag 20448  T
Q  311 agaggttactttgaagtacctcattt 336  Q
    ||||||||||||| ||||||||||||    
T  20447 agaggttactttggagtacctcattt 20422  T

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Target: scaffold0027 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 279 - 357
Target Start/End: Complemental strand, 65701 - 65622
Alignment:
Q  279 aattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatt-ttttattccgaatcagaccctt 357  Q
    ||||||||| ||||| ||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| || |||||||    
T  65701 aattttcgttgtttcggacgaaatttcgacaaagatgttactttgaagtacctcatttttttattccgagtcggaccctt 65622  T

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Target: scaffold0027; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 483 - 523
Target Start/End: Complemental strand, 65510 - 65470
Alignment:
Q  483 tgtcaataagtccgaaggttttcggcagtggtccaaatttc 523  Q
    ||||||| |||||||| ||||||||||||||||||||||||    
T  65510 tgtcaatgagtccgaaagttttcggcagtggtccaaatttc 65470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0315 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 281 - 337
Target Start/End: Complemental strand, 10651 - 10595
Alignment:
Q  281 ttttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 337  Q
    ||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||    
T  10651 ttttcgtcgcttcagacgaaatttcggcaaagaggttactttgaagtacctcatttt 10595  T

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Target: scaffold0015 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 306
Target Start/End: Original strand, 192528 - 192623
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttca 306  Q
    ||||||||| ||||||||||||||||||||||||  || |  ||||| |||||| |||||||  ||| ||| | |||||||| |||||||||||||    
T  192528 tgtcataccccaaattttgaccacttttctctatttttacagattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttca 192623  T

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Target: scaffold0290 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 260 - 337
Target Start/End: Complemental strand, 15837 - 15760
Alignment:
Q  260 tcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 337  Q
    |||| ||||||||| | ||||||||||||| ||||||||||||| |   | | |||||||||||||||||||||||||    
T  15837 tcgtctttttaaagccaggaattttcgtcgcttcagacgaaattacggtagataggttactttgaagtacctcatttt 15760  T

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Target: scaffold0991 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 211 - 304
Target Start/End: Complemental strand, 438 - 345
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattt 304  Q
    ||||||||| ||||||||||||||||||||||||  || |  ||||| |||||| |||||||  ||| ||| | | |||||| |||||||||||    
T  438 tgtcataccccaaattttgaccacttttctctatttttacacattttgttcgtacttttaaaaccggaaatgtccatcgttttagacgaaattt 345  T

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Target: scaffold0048 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 7620 - 7587
Alignment:
Q  311 agaggttactttgaagtacctcattttttattcc 344  Q
    ||||||||||||||||||||||||||||||||||    
T  7620 agaggttactttgaagtacctcattttttattcc 7587  T

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Target: scaffold0048; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 210 - 283
Target Start/End: Complemental strand, 7695 - 7622
Alignment:
Q  210 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattt 283  Q
    |||||||||| |||||||||||||||||||||||| ||| || ||||| ||    ||||||||||| |||||||    
T  7695 atgtcataccccaaattttgaccacttttctctattcttacccatttttttgcattttttaaagtcaggaattt 7622  T

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Target: scaffold0044 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 211 - 304
Target Start/End: Complemental strand, 81851 - 81758
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattt 304  Q
    |||||||||  |||||||||||||||||||||||  || |  ||||| |||||| |||||||  ||| ||| | |||||||| |||||||||||    
T  81851 tgtcataccctaaattttgaccacttttctctatttttacacattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaattt 81758  T

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Target: scaffold0044; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 305
Target Start/End: Complemental strand, 65603 - 65509
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 305  Q
    ||||||||| |||||||||  |||||||||||||  || |  ||||| |||||| |||||||  ||| ||| | |||||||| ||||||||||||    
T  65603 tgtcataccccaaattttgtacacttttctctatttttacacattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttc 65509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 337
Target Start/End: Original strand, 61371 - 61418
Alignment:
Q  290 tttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 337  Q
    ||||| || |||||||| || |||||||||||||||||||||||||||    
T  61371 tttcaaacaaaatttcagcatagaggttactttgaagtacctcatttt 61418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0863 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0863
Description:

Target: scaffold0863; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 305
Target Start/End: Complemental strand, 437 - 343
Alignment:
Q  211 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 305  Q
    ||||||||| |||||||||||||||||||| |||  || |  ||||| |||||| |||||||  ||| ||| | | |||||| ||||||||||||    
T  437 tgtcataccccaaattttgaccacttttctttatttttacacattttgttcgtacttttaaaaccggaaatgtccatcgttttagacgaaatttc 343  T

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Target: scaffold1380 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1380
Description:

Target: scaffold1380; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 556 - 597
Alignment:
Q  296 acgaaatttcaacaaagaggttactttgaagtacctcatttt 337  Q
    |||||||||| ||| ||||||||||||| |||||||||||||    
T  556 acgaaatttcgacagagaggttactttggagtacctcatttt 597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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