View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12099_low_3 (Length: 420)

Name: NF12099_low_3
Description: NF12099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12099_low_3
NF12099_low_3
[»] chr8 (25 HSPs)
chr8 (151-287)||(5738314-5738449)
chr8 (68-148)||(5152443-5152523)
chr8 (88-151)||(42757601-42757664)
chr8 (175-245)||(5717247-5717316)
chr8 (87-149)||(16106033-16106095)
chr8 (87-149)||(16113273-16113335)
chr8 (88-150)||(23220004-23220066)
chr8 (87-151)||(16101518-16101582)
chr8 (79-152)||(30972007-30972080)
chr8 (88-148)||(12836696-12836756)
chr8 (88-176)||(23220888-23220976)
chr8 (100-146)||(30971285-30971331)
chr8 (97-150)||(1274126-1274179)
chr8 (72-141)||(42758397-42758466)
chr8 (88-147)||(3743129-3743188)
chr8 (88-150)||(18573510-18573572)
chr8 (100-146)||(28966540-28966586)
chr8 (292-354)||(29717449-29717511)
chr8 (68-123)||(37730903-37730959)
chr8 (100-151)||(32744005-32744056)
chr8 (318-385)||(34204539-34204606)
chr8 (100-146)||(1636848-1636894)
chr8 (115-151)||(5674052-5674088)
chr8 (79-147)||(15869725-15869793)
chr8 (79-150)||(37731865-37731934)
[»] chr4 (22 HSPs)
chr4 (287-403)||(54702552-54702668)
chr4 (82-150)||(31908357-31908425)
chr4 (87-150)||(12206760-12206823)
chr4 (87-151)||(31689172-31689236)
chr4 (87-147)||(31914522-31914582)
chr4 (87-149)||(12210927-12210989)
chr4 (100-150)||(23088272-23088322)
chr4 (100-150)||(34837993-34838043)
chr4 (104-166)||(34836730-34836792)
chr4 (79-147)||(6311785-6311853)
chr4 (100-149)||(23089292-23089341)
chr4 (74-134)||(42523214-42523274)
chr4 (100-147)||(31135169-31135216)
chr4 (74-148)||(12921858-12921932)
chr4 (101-147)||(20627526-20627572)
chr4 (72-146)||(48314367-48314441)
chr4 (99-151)||(11791356-11791408)
chr4 (74-149)||(12921126-12921201)
chr4 (100-147)||(41164190-41164237)
chr4 (80-150)||(50432816-50432887)
chr4 (104-138)||(34978352-34978386)
chr4 (87-150)||(6310815-6310878)
[»] chr7 (13 HSPs)
chr7 (68-142)||(1409380-1409454)
chr7 (88-151)||(38887326-38887389)
chr7 (100-150)||(41970884-41970934)
chr7 (87-151)||(5997620-5997684)
chr7 (79-150)||(5995249-5995320)
chr7 (88-148)||(47552509-47552569)
chr7 (100-151)||(45550993-45551044)
chr7 (100-148)||(45551827-45551875)
chr7 (99-152)||(43744558-43744611)
chr7 (87-147)||(27268251-27268311)
chr7 (91-148)||(27875931-27875988)
chr7 (286-323)||(37357359-37357396)
chr7 (102-146)||(28778123-28778167)
[»] chr1 (14 HSPs)
chr1 (74-152)||(17238591-17238669)
chr1 (74-150)||(17239402-17239478)
chr1 (72-151)||(16801968-16802047)
chr1 (87-151)||(42031702-42031766)
chr1 (87-150)||(42026892-42026955)
chr1 (287-387)||(6959292-6959392)
chr1 (79-151)||(34269085-34269157)
chr1 (79-151)||(34275320-34275392)
chr1 (99-146)||(16802703-16802750)
chr1 (286-387)||(6964709-6964811)
chr1 (99-150)||(34267972-34268023)
chr1 (74-152)||(48572805-48572883)
chr1 (285-326)||(46119767-46119808)
chr1 (103-151)||(24790875-24790923)
[»] chr3 (20 HSPs)
chr3 (79-163)||(27473840-27473924)
chr3 (79-151)||(54285816-54285888)
chr3 (74-150)||(40929853-40929929)
chr3 (100-150)||(27359857-27359907)
chr3 (100-150)||(28422867-28422917)
chr3 (100-149)||(4300930-4300979)
chr3 (100-149)||(29032826-29032875)
chr3 (87-149)||(33147329-33147391)
chr3 (87-147)||(33148308-33148368)
chr3 (100-144)||(17619166-17619210)
chr3 (74-149)||(39645364-39645440)
chr3 (285-385)||(46994365-46994465)
chr3 (99-150)||(27317496-27317547)
chr3 (79-150)||(27474881-27474952)
chr3 (87-133)||(17615035-17615081)
chr3 (74-146)||(39644540-39644613)
chr3 (102-146)||(2841230-2841274)
chr3 (68-148)||(8652108-8652187)
chr3 (1-53)||(8653900-8653951)
chr3 (74-146)||(14460129-14460201)
[»] scaffold0015 (1 HSPs)
scaffold0015 (87-149)||(45330-45392)
[»] chr6 (14 HSPs)
chr6 (68-148)||(29375033-29375113)
chr6 (100-150)||(5860546-5860596)
chr6 (100-158)||(17279872-17279930)
chr6 (100-149)||(19237625-19237674)
chr6 (100-151)||(8683878-8683929)
chr6 (79-150)||(10792479-10792550)
chr6 (88-149)||(28522618-28522679)
chr6 (292-400)||(3723977-3724085)
chr6 (99-151)||(10793600-10793652)
chr6 (3-54)||(5860403-5860454)
chr6 (88-150)||(28523366-28523428)
chr6 (115-150)||(8238065-8238100)
chr6 (88-146)||(12441716-12441774)
chr6 (100-146)||(17280721-17280767)
[»] chr2 (9 HSPs)
chr2 (88-150)||(39240864-39240926)
chr2 (74-150)||(9243990-9244066)
chr2 (79-148)||(18237624-18237693)
chr2 (79-150)||(18236653-18236724)
chr2 (100-148)||(18767591-18767639)
chr2 (101-139)||(9244251-9244289)
chr2 (89-151)||(45631150-45631212)
chr2 (100-150)||(32667406-32667456)
chr2 (106-138)||(29558160-29558192)
[»] scaffold0676 (1 HSPs)
scaffold0676 (77-140)||(3168-3231)
[»] chr5 (6 HSPs)
chr5 (79-150)||(33471161-33471232)
chr5 (88-149)||(30667861-30667922)
chr5 (74-151)||(33471849-33471926)
chr5 (287-331)||(37600332-37600376)
chr5 (112-147)||(23989568-23989603)
chr5 (104-150)||(22671603-22671648)
[»] scaffold0112 (2 HSPs)
scaffold0112 (99-146)||(24728-24775)
scaffold0112 (88-146)||(35003-35061)
[»] scaffold0006 (1 HSPs)
scaffold0006 (74-150)||(162459-162535)
[»] scaffold0550 (1 HSPs)
scaffold0550 (88-137)||(5603-5652)


Alignment Details
Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 151 - 287
Target Start/End: Complemental strand, 5738449 - 5738314
Alignment:
Q  151 ttgaaaaatatatataaatagccatagtaaattgcataatgacttatatttaaggacaagtaaattcttcaaaaaagagtttataattagagactcaggg 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||    
T  5738449 ttgaaaaatatatataaatagccatagtaaattgcataatgacttatatttaacgacaagtaaattcttca-aaaagagtttataattagagacccaggg 5738351  T
Q  251 agccaatggtaagtacctttatttgcattttcctaaa 287  Q
    |||||||||||||||| ||||||||||||||||||||    
T  5738350 agccaatggtaagtacttttatttgcattttcctaaa 5738314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 5152443 - 5152523
Alignment:
Q  68 tggatattttggtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacc 148  Q
    ||||| |||||||||||| ||||||||||  |||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  5152443 tggatcttttggtccaaatgaaaaggtgccacttgctaaaatagaccttcataaaaatgagcgggtctattgtagcaaacc 5152523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 88 - 151
Target Start/End: Complemental strand, 42757664 - 42757601
Alignment:
Q  88 aaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccct 151  Q
    |||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  42757664 aaaaggtgcagcttgctaaaataaaccttcataaaaatgagtgggtctattgtagcaaacccct 42757601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 5717316 - 5717247
Alignment:
Q  175 tagtaaattgcataatgacttatatttaaggacaagtaaattcttcaaaaaagagtttataattagagact 245  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  5717316 tagtaaattgtataataacttatatttaaggacaagtaaattcttca-aaaagggtttataattagagact 5717247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 16106033 - 16106095
Alignment:
Q  87 gaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaaccc 149  Q
    |||||||||||  ||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  16106033 gaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaaccc 16106095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 16113273 - 16113335
Alignment:
Q  87 gaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaaccc 149  Q
    |||||||||||  ||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  16113273 gaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaaccc 16113335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 88 - 150
Target Start/End: Complemental strand, 23220066 - 23220004
Alignment:
Q  88 aaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccc 150  Q
    |||||||||| |||||||||||||| ||||||||||| | |||||||||||||||||||||||    
T  23220066 aaaaggtgcagcttgctaaaatagaccttcataaaaaagggtgggtctattgtagcaaacccc 23220004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 151
Target Start/End: Complemental strand, 16101582 - 16101518
Alignment:
Q  87 gaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccct 151  Q
    |||||||||||  ||||||||||||| |||||| |||||||||| ||||||||||||||||||||    
T  16101582 gaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgtgtctattgtagcaaacccct 16101518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 30972007 - 30972080
Alignment:
Q  79 gtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccctt 152  Q
    ||||||| |||||||||    ||||||||||||| |||||| ||| ||||||||||||||||||||||||||||    
T  30972007 gtccaaatgaaaaggtgttggttgctaaaatagaccttcatgaaattgagtgggtctattgtagcaaacccctt 30972080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 12836756 - 12836696
Alignment:
Q  88 aaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacc 148  Q
    ||||||||||||||||||||||||| |||||| ||||   |||||||||||||||||||||    
T  12836756 aaaaggtgcaccttgctaaaatagaccttcatgaaaaaatgtgggtctattgtagcaaacc 12836696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 88 - 176
Target Start/End: Original strand, 23220888 - 23220976
Alignment:
Q  88 aaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaaccccttgaaaaatatatataaatagccata 176  Q
    |||||||||| |||||||||||||| ||||||||||| | | ||||||||||||||||| ||||  | | ||||||||| |||| ||||    
T  23220888 aaaaggtgcagcttgctaaaatagaccttcataaaaaagggagggtctattgtagcaaatccctatatatatatatatatatagacata 23220976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 30971331 - 30971285
Alignment:
Q  100 ttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaa 146  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||    
T  30971331 ttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaa 30971285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 1274126 - 1274179
Alignment:
Q  97 accttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccc 150  Q
    |||||||||||||||| |||||| ||||| ||| ||||||||||||||||||||    
T  1274126 accttgctaaaatagaccttcatgaaaataagttggtctattgtagcaaacccc 1274179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 42758397 - 42758466
Alignment:
Q  72 tattttggtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgta 141  Q
    |||||| || |||| ||||| ||||| |||||||||||||| |||||||  |||||||||||||||||||    
T  42758397 tatttttgtacaaaggaaaatgtgcagcttgctaaaatagaccttcatattaatgagtgggtctattgta 42758466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 147
Target Start/End: Complemental strand, 3743188 - 3743129
Alignment:
Q  88 aaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaac 147  Q
    |||||||| | | |||||||||||| ||||||||||||||| || |||||||||||||||    
T  3743188 aaaaggtgaatcatgctaaaatagaccttcataaaaatgaggggatctattgtagcaaac 3743129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 150
Target Start/End: Complemental strand, 18573572 - 18573510
Alignment:
Q  88 aaaaggtgcaccttgctaaaatagatcttcat-aaaaatgagtgggtctattgtagcaaacccc 150  Q
    |||||||||| |||||||||||||| ||||||  |||||| |||||||||||||||||||||||    
T  18573572 aaaaggtgcatcttgctaaaatagaccttcatgtaaaatg-gtgggtctattgtagcaaacccc 18573510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 28966540 - 28966586
Alignment:
Q  100 ttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaa 146  Q
    ||||||||||||| |||||||||||||||| ||| ||||||||||||    
T  28966540 ttgctaaaatagaacttcataaaaatgagttggtttattgtagcaaa 28966586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 354
Target Start/End: Original strand, 29717449 - 29717511
Alignment:
Q  292 aatgataaatgaacacaaaaatacatacacaaatatgacactagggacaattgtgtaatttcc 354  Q
    ||||||||||||||||||||||||| ||||||||| ||||  | ||  |||||||||||||||    
T  29717449 aatgataaatgaacacaaaaatacagacacaaatacgacatcaagggtaattgtgtaatttcc 29717511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 123
Target Start/End: Complemental strand, 37730959 - 37730903
Alignment:
Q  68 tggatattttg-gtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaa 123  Q
    ||||||||||| ||||||| ||||||||||| |||||||||||||| ||||| ||||    
T  37730959 tggatattttgtgtccaaaggaaaaggtgcatcttgctaaaatagaccttcacaaaa 37730903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 100 - 151
Target Start/End: Complemental strand, 32744056 - 32744005
Alignment:
Q  100 ttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccct 151  Q
    ||||||||||||| |||||||||||||| |  ||||| ||||||||||||||    
T  32744056 ttgctaaaatagaccttcataaaaatgaataagtctactgtagcaaacccct 32744005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 385
Target Start/End: Original strand, 34204539 - 34204606
Alignment:
Q  318 acacaaatatgacactagggacaattgtgtaatttccattaaagtctaatggcacaattgatatttca 385  Q
    ||||||||||||||| ||||| || | |||||||| ||| ||||| |||||||| |||||| ||||||    
T  34204539 acacaaatatgacaccagggataagtttgtaattttcatcaaagtttaatggcataattgagatttca 34204606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 1636894 - 1636848
Alignment:
Q  100 ttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaa 146  Q
    |||| ||||||||||||||| ||||||||||  ||||||||||||||    
T  1636894 ttgcaaaaatagatcttcatgaaaatgagtgaatctattgtagcaaa 1636848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 5674088 - 5674052
Alignment:
Q  115 ttcataaaaatgagtgggtctattgtagcaaacccct 151  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  5674088 ttcataaaaattagttggtctattgtagcaaacccct 5674052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 15869725 - 15869793
Alignment:
Q  79 gtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaac 147  Q
    ||||||| |||||||||    |||||||| |  |||||||||||||| ||||||| |||||||||||||    
T  15869725 gtccaaatgaaaaggtgttgattgctaaagttaatcttcataaaaataagtgggtttattgtagcaaac 15869793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 37731865 - 37731934
Alignment:
Q  79 gtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccc 150  Q
    ||||||| ||||||||| | |||||||||||| | ||||| ||||   || |||||||||||||||||||||    
T  37731865 gtccaaaggaaaaggtgtatcttgctaaaatacaccttcacaaaa--tagagggtctattgtagcaaacccc 37731934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 287 - 403
Target Start/End: Original strand, 54702552 - 54702668
Alignment:
Q  287 acagcaatgataaatgaacacaaaaatacatacacaaatatgacactagggacaattgtgtaatttccattaaagtctaatggcacaattgatatttcaa 386  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  54702552 acagcaatgataaatggacacaaaaatacatacacaaatatgacactagggacaattgtgtaatttccattaaagtccaatggcacaattgatatttcaa 54702651  T
Q  387 tgaaaaatgaggggagt 403  Q
    |||||||||||||||||    
T  54702652 tgaaaaatgaggggagt 54702668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 82 - 150
Target Start/End: Original strand, 31908357 - 31908425
Alignment:
Q  82 caaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccc 150  Q
    |||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31908357 caaaggaaaaggtgcaacttgctaaaatagaccttcataaaaatgagtgggtctattgtagcaaacccc 31908425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 12206823 - 12206760
Alignment:
Q  87 gaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccc 150  Q
    |||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12206823 gaaaaggtgcaggttgctaaaatagaccttcataaaaatgagtgggtctattgtagcaaacccc 12206760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 151
Target Start/End: Complemental strand, 31689236 - 31689172
Alignment:
Q  87 gaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccct 151  Q
    |||||||||||  ||||||||||||| |||||| |||||||||||||||||||||||||| ||||    
T  31689236 gaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaatccct 31689172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 31914582 - 31914522
Alignment:
Q  87 gaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaac 147  Q
    ||||||||||   |||||||||||||||||||| |||||||||||||||||||||||||||    
T  31914582 gaaaaggtgctggttgctaaaatagatcttcatgaaaatgagtgggtctattgtagcaaac 31914522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 12210927 - 12210989
Alignment:
Q  87 gaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaaccc 149  Q
    |||||||||||  ||||||||||||| |||||| ||||||||| |||||||||||||||||||    
T  12210927 gaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagttggtctattgtagcaaaccc 12210989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 23088322 - 23088272
Alignment:
Q  100 ttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccc 150  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  23088322 ttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaacccc 23088272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 34837993 - 34838043
Alignment:
Q  100 ttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccc 150  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  34837993 ttgctaaaataaaacttcataaaaatgagtgggtctattgtagcaaacccc 34838043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 34836792 - 34836730
Alignment:
Q  104 taaaatagatcttcataaaaatgagtgggtctattgtagcaaaccccttgaaaaatatatata 166  Q
    ||||||||| |||||||||||| |||||||||||||||| |||||| || ||| |||||||||    
T  34836792 taaaatagaccttcataaaaataagtgggtctattgtagaaaacccttttaaatatatatata 34836730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 6311785 - 6311853
Alignment:
Q  79 gtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatga-gtgggtctattgtagcaaac 147  Q
    ||||||| |||||||||||||||||||||||||| ||||||  |||||| ||||||||||| ||||||||    
T  6311785 gtccaaatgaaaaggtgcaccttgctaaaatagaccttcat-gaaatgaggtgggtctattatagcaaac 6311853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 23089292 - 23089341
Alignment:
Q  100 ttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaaccc 149  Q
    ||||||||||||| || ||| |||||||||||||||||||||||||||||    
T  23089292 ttgctaaaatagacctacatgaaaatgagtgggtctattgtagcaaaccc 23089341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 42523274 - 42523214
Alignment:
Q  74 ttttggtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtc 134  Q
    |||||||||||| |||||||||   |||||||||| ||| |||||||||||||||||||||    
T  42523274 ttttggtccaaatgaaaaggtgttacttgctaaaagagaccttcataaaaatgagtgggtc 42523214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 31135216 - 31135169
Alignment:
Q  100 ttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaac 147  Q
    ||||||||||||| |||||| ||||||||| |||||||||||||||||    
T  31135216 ttgctaaaatagaccttcatgaaaatgagttggtctattgtagcaaac 31135169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 148
Target Start/End: Original strand, 12921858 - 12921932
Alignment:
Q  74 ttttggtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacc 148  Q
    |||| ||||||| ||||||||||    |||||||||||| ||||||||||   ||||||||||||||||||||||    
T  12921858 ttttcgtccaaatgaaaaggtgctggatgctaaaatagaccttcataaaatgaagtgggtctattgtagcaaacc 12921932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 20627572 - 20627526
Alignment:
Q  101 tgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaac 147  Q
    ||||||||||||  ||||| |||||||||||||||||||||||||||    
T  20627572 tgctaaaatagactttcatgaaaatgagtgggtctattgtagcaaac 20627526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 146
Target Start/End: Complemental strand, 48314441 - 48314367
Alignment:
Q  72 tattttggtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaa 146  Q
    |||||| ||| ||| |||||||||   ||||||||||||||  ||||| ||||||||||||||||||| ||||||    
T  48314441 tattttagtctaaatgaaaaggtgttgcttgctaaaatagactttcatgaaaatgagtgggtctattgcagcaaa 48314367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 11791408 - 11791356
Alignment:
Q  99 cttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccct 151  Q
    ||||||||||||||  |||||||||   |||||||||||||||||||||||||    
T  11791408 cttgctaaaatagacattcataaaatgaagtgggtctattgtagcaaacccct 11791356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 149
Target Start/End: Complemental strand, 12921201 - 12921126
Alignment:
Q  74 ttttggtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaaccc 149  Q
    |||||||||||| ||||||||||    |||||||||| | ||||||||||   |||| ||||||||||||||||||    
T  12921201 ttttggtccaaatgaaaaggtgctggatgctaaaataaaccttcataaaatgaagtgcgtctattgtagcaaaccc 12921126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 41164190 - 41164237
Alignment:
Q  100 ttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaac 147  Q
    |||||||||||||  ||||||||||||| |||||||| ||||||||||    
T  41164190 ttgctaaaatagactttcataaaaatgaatgggtctactgtagcaaac 41164237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 50432816 - 50432887
Alignment:
Q  80 tccaaaag-aaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccc 150  Q
    |||||||| |||||||||| ||||||||||| || |||||||||||   ||||||||||| || ||||||||    
T  50432816 tccaaaagcaaaaggtgcagcttgctaaaatggaccttcataaaaagatgtgggtctattataacaaacccc 50432887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 138
Target Start/End: Complemental strand, 34978386 - 34978352
Alignment:
Q  104 taaaatagatcttcataaaaatgagtgggtctatt 138  Q
    ||||||||| |||||||||||||||||||||||||    
T  34978386 taaaatagaccttcataaaaatgagtgggtctatt 34978352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 6310878 - 6310815
Alignment:
Q  87 gaaaaggtgcaccttgctaaaatagatcttcataaaaatga-gtgggtctattgtagcaaacccc 150  Q
    ||||||||||||||| |||||||||| ||||||  |||||| |||| |||||||||| |||||||    
T  6310878 gaaaaggtgcaccttcctaaaatagaccttcat-gaaatgaggtggatctattgtagtaaacccc 6310815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 1409454 - 1409380
Alignment:
Q  68 tggatattttggtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtag 142  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1409454 tggatattttggtccaagagaaaaggtgcaccttgctaaaatagaccttcataaaaatgagtgggtctattgtag 1409380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 88 - 151
Target Start/End: Complemental strand, 38887389 - 38887326
Alignment:
Q  88 aaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccct 151  Q
    ||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||    
T  38887389 aaaaggtgcaccttgctaaaatagaccttcatgaaaatgagtgagtctattgtagcaaacccct 38887326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 41970934 - 41970884
Alignment:
Q  100 ttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccc 150  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41970934 ttgctaaaatagatcttcatgaaaatgagtgggtctattgtagcaaacccc 41970884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 151
Target Start/End: Original strand, 5997620 - 5997684
Alignment:
Q  87 gaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccct 151  Q
    ||||||||||   ||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  5997620 gaaaaggtgctggttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaacccct 5997684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 5995320 - 5995249
Alignment:
Q  79 gtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccc 150  Q
    ||||||| |||||||||    ||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  5995320 gtccaaatgaaaaggtgttggttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaacccc 5995249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 47552509 - 47552569
Alignment:
Q  88 aaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacc 148  Q
    |||||||||| | ||||||||||||||||||| |||| | |||||||||||||||||||||    
T  47552509 aaaaggtgcatcatgctaaaatagatcttcatgaaaaagggtgggtctattgtagcaaacc 47552569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 151
Target Start/End: Complemental strand, 45551044 - 45550993
Alignment:
Q  100 ttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccct 151  Q
    ||||||||||||| |||||| ||| |||||||||||||||||||||||||||    
T  45551044 ttgctaaaatagaccttcatgaaattgagtgggtctattgtagcaaacccct 45550993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 45551827 - 45551875
Alignment:
Q  100 ttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacc 148  Q
    ||||||||||||| |||||| ||| ||||||||||||||||||||||||    
T  45551827 ttgctaaaatagaccttcatgaaattgagtgggtctattgtagcaaacc 45551875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 43744611 - 43744558
Alignment:
Q  99 cttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccctt 152  Q
    ||||||||||| |||||||| ||||   ||||||||||||||||||||||||||    
T  43744611 cttgctaaaatggatcttcacaaaatgaagtgggtctattgtagcaaacccctt 43744558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 27268251 - 27268311
Alignment:
Q  87 gaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaac 147  Q
    ||||||||||   ||||||||||||| |||||| ||||||||||| ||||||||| |||||    
T  27268251 gaaaaggtgctgattgctaaaatagaccttcatgaaaatgagtggatctattgtatcaaac 27268311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 27875988 - 27875931
Alignment:
Q  91 aggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacc 148  Q
    |||||||||||||||||||||| |||||| ||||   | || ||||||||||||||||    
T  27875988 aggtgcaccttgctaaaatagaccttcatgaaaaaaggcggatctattgtagcaaacc 27875931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 323
Target Start/End: Complemental strand, 37357396 - 37357359
Alignment:
Q  286 aacagcaatgataaatgaacacaaaaatacatacacaa 323  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  37357396 aacagcaatgatacatgaacacaaaaaaacatacacaa 37357359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 28778123 - 28778167
Alignment:
Q  102 gctaaaatagatcttcataaaaatgagtgggtctattgtagcaaa 146  Q
    ||||||||||| ||| || ||||||||||||||||||| ||||||    
T  28778123 gctaaaatagaccttgatgaaaatgagtgggtctattgaagcaaa 28778167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 17238669 - 17238591
Alignment:
Q  74 ttttggtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccctt 152  Q
    |||||||||||| ||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17238669 ttttggtccaaacgaaaaggtgctacttgctaaaatagaccttcataaaaatgagtgggtctattgtagcaaacccctt 17238591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 17239402 - 17239478
Alignment:
Q  74 ttttggtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccc 150  Q
    |||||||||||| ||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17239402 ttttggtccaaatgaaaaggtgctacttgctaaaatagaccttcataaaaatgagtgggtctattgtagcaaacccc 17239478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 16802047 - 16801968
Alignment:
Q  72 tattttggtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccct 151  Q
    |||||| ||||||  |||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  16802047 tatttttgtccaagtgaaaaggtgccccttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaacccct 16801968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 87 - 151
Target Start/End: Original strand, 42031702 - 42031766
Alignment:
Q  87 gaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccct 151  Q
    |||||||||||  ||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  42031702 gaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaacccct 42031766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 42026955 - 42026892
Alignment:
Q  87 gaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccc 150  Q
    |||||||||||  ||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  42026955 gaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaacccc 42026892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 387
Target Start/End: Complemental strand, 6959392 - 6959292
Alignment:
Q  287 acagcaatgataaatgaacacaaaaatacatacacaaatatgacactagggacaattgtgtaatttccattaaagtctaatggcacaattgatatttcaa 386  Q
    |||| |||||||| |||||||||||| | | ||||||||  ||||| | |||||||| |||||||||||| ||||| |||||||| |||||| |||||||    
T  6959392 acagaaatgataactgaacacaaaaaaaaagacacaaattcgacaccaaggacaattatgtaatttccatcaaagtttaatggcataattgagatttcaa 6959293  T
Q  387 t 387  Q
    |    
T  6959292 t 6959292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 34269085 - 34269157
Alignment:
Q  79 gtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccct 151  Q
    ||||||| |||||||||   |||||||||||||| ||||||||||  || |||||||||||||||||||||||    
T  34269085 gtccaaatgaaaaggtgttgcttgctaaaatagaccttcataaaatggaatgggtctattgtagcaaacccct 34269157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 34275320 - 34275392
Alignment:
Q  79 gtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccct 151  Q
    ||||||| |||||||||   |||||||||||||| ||||||||||  || |||||||||||||||||||||||    
T  34275320 gtccaaatgaaaaggtgttgcttgctaaaatagaccttcataaaatggaatgggtctattgtagcaaacccct 34275392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 16802703 - 16802750
Alignment:
Q  99 cttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaa 146  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||    
T  16802703 cttgctaaaatagacctttataaaaatgagtgggtctattgtagcaaa 16802750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 286 - 387
Target Start/End: Complemental strand, 6964811 - 6964709
Alignment:
Q  286 aacagcaatgataaatgaacacaaaaatacat-acacaaatatgacactagggacaattgtgtaatttccattaaagtctaatggcacaattgatatttc 384  Q
    ||||| |||||||| |||||||||||| | |  ||||||||  ||||| | |||||||| |||||||||||| ||||| |||||||| |||||| |||||    
T  6964811 aacagaaatgataactgaacacaaaaaaaaaagacacaaattcgacaccaaggacaattatgtaatttccatcaaagtttaatggcataattgagatttc 6964712  T
Q  385 aat 387  Q
    |||    
T  6964711 aat 6964709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 34268023 - 34267972
Alignment:
Q  99 cttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccc 150  Q
    |||||||||||||| ||| ||||||  |||||||||||||||||||||||||    
T  34268023 cttgctaaaatagaccttgataaaatggagtgggtctattgtagcaaacccc 34267972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 48572805 - 48572883
Alignment:
Q  74 ttttggtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccctt 152  Q
    |||||||| ||| |||||||||||   |||||||||||| ||| | |||||   |||||||||||||||||||||||||    
T  48572805 ttttggtctaaatgaaaaggtgcatgatgctaaaatagaccttaacaaaaagaggtgggtctattgtagcaaacccctt 48572883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 46119767 - 46119808
Alignment:
Q  285 aaacagcaatgataaatgaacacaaaaatacatacacaaata 326  Q
    |||||| ||||||||||||||||| ||||||| |||||||||    
T  46119767 aaacagaaatgataaatgaacacataaatacagacacaaata 46119808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 24790875 - 24790923
Alignment:
Q  103 ctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccct 151  Q
    |||||||||| ||||||||||   |||||||||||||||||||| ||||    
T  24790875 ctaaaatagaccttcataaaatgaagtgggtctattgtagcaaatccct 24790923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 27473924 - 27473840
Alignment:
Q  79 gtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaaccccttgaaaaatatat 163  Q
    ||||||| ||||||||||| |||||||||||||| ||||| ||||  ||||||||||||||||||||||||||| || |||||||    
T  27473924 gtccaaaggaaaaggtgcatcttgctaaaatagaccttcacaaaatagagtgggtctattgtagcaaacccctttaagaatatat 27473840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 54285816 - 54285888
Alignment:
Q  79 gtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccct 151  Q
    ||||||| ||||||||| |  ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  54285816 gtccaaatgaaaaggtgtaggttgctaaaatagaccttcataaaaatgagtgggtctattgtagcaaacccct 54285888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 40929853 - 40929929
Alignment:
Q  74 ttttggtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccc 150  Q
    |||| ||||||| |||||||||    ||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  40929853 ttttcgtccaaatgaaaaggtgttggttgctaaaataaaccttcataaaaatgagtgggtctattgtagcaaacccc 40929929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 27359857 - 27359907
Alignment:
Q  100 ttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccc 150  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  27359857 ttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaacccc 27359907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 28422867 - 28422917
Alignment:
Q  100 ttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccc 150  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  28422867 ttgctaaaatagactttcataaaaatgagtgggtctattgtagcaaacccc 28422917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 4300979 - 4300930
Alignment:
Q  100 ttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaaccc 149  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  4300979 ttgctaaaatagatcttcatgaaaataagtgggtctattgtagcaaaccc 4300930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 29032826 - 29032875
Alignment:
Q  100 ttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaaccc 149  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  29032826 ttgctaaaatagaccttcataaaaatgaatgggtctattgtagcaaaccc 29032875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 149
Target Start/End: Complemental strand, 33147391 - 33147329
Alignment:
Q  87 gaaaaggtgcaccttgctaaaatagatcttcataaaaatga-gtgggtctattgtagcaaaccc 149  Q
    ||||||||||| |||||||||||||||||||||  |||||| ||||||||||||||||||||||    
T  33147391 gaaaaggtgcatcttgctaaaatagatcttcat-gaaatgaggtgggtctattgtagcaaaccc 33147329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 33148308 - 33148368
Alignment:
Q  87 gaaaaggtgcaccttgctaaaatagatcttcataaaaatga-gtgggtctattgtagcaaac 147  Q
    |||||||||||||||||||||||||| |||||| ||||||| |||||| |||||||||||||    
T  33148308 gaaaaggtgcaccttgctaaaatagaccttcat-aaaatgaggtgggtttattgtagcaaac 33148368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 17619166 - 17619210
Alignment:
Q  100 ttgctaaaatagatcttcataaaaatgagtgggtctattgtagca 144  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||    
T  17619166 ttgctaaaatagaccttcatgaaaatgagtgggtctattgtagca 17619210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 149
Target Start/End: Original strand, 39645364 - 39645440
Alignment:
Q  74 ttttggtccaaaag-aaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaaccc 149  Q
    |||| ||||||||| ||||||| || ||||||||||| || |||||||||||   ||||||||||||||||||||||    
T  39645364 tttttgtccaaaagcaaaaggtacagcttgctaaaatggaccttcataaaaagaggtgggtctattgtagcaaaccc 39645440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 385
Target Start/End: Original strand, 46994365 - 46994465
Alignment:
Q  285 aaacagcaatgataaatgaacacaaaaatacatacacaaatatgacactagggacaattgtgtaatttccattaaagtctaatggcacaattgatatttc 384  Q
    ||||| ||||||||||   ||||||||||||| |||||||||||| |  ||||| || | |||||||| ||| ||||| |||||||| |||||| |||||    
T  46994365 aaacatcaatgataaacagacacaaaaatacaaacacaaatatgagatcagggataagtttgtaattttcatcaaagtttaatggcataattgagatttc 46994464  T
Q  385 a 385  Q
    |    
T  46994465 a 46994465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 27317496 - 27317547
Alignment:
Q  99 cttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccc 150  Q
    |||||||||||| | |||||| |||||||| |||||||||||||||||||||    
T  27317496 cttgctaaaataaaccttcatgaaaatgagcgggtctattgtagcaaacccc 27317547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 27474881 - 27474952
Alignment:
Q  79 gtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccc 150  Q
    |||||||  |||||||| | ||||||||||||||  |||| ||||  |||||||||||||||||||||||||    
T  27474881 gtccaaagaaaaaggtgtatcttgctaaaatagacgttcacaaaatagagtgggtctattgtagcaaacccc 27474952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 17615081 - 17615035
Alignment:
Q  87 gaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggt 133  Q
    |||||||||||  ||||||||||||| ||||||||||||||||||||    
T  17615081 gaaaaggtgcaagttgctaaaatagaccttcataaaaatgagtgggt 17615035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 39644613 - 39644540
Alignment:
Q  74 ttttggtccaaaag-aaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaa 146  Q
    |||| ||||||||| |||||||||| ||||||||||| || |||||| ||||   |||||||||||||||||||    
T  39644613 tttttgtccaaaagcaaaaggtgcagcttgctaaaatggaccttcatgaaaagaggtgggtctattgtagcaaa 39644540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 2841230 - 2841274
Alignment:
Q  102 gctaaaatagatcttcataaaaatgagtgggtctattgtagcaaa 146  Q
    ||||||||||| ||||||||||   ||||||||||||||||||||    
T  2841230 gctaaaatagaccttcataaaatgaagtgggtctattgtagcaaa 2841274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 148
Target Start/End: Complemental strand, 8652187 - 8652108
Alignment:
Q  68 tggatattttggtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacc 148  Q
    |||||||||  ||| ||| |||||||  ||||||| ||||||||| |||||| ||||   |||||||||||||||||||||    
T  8652187 tggatatttgtgtctaaaggaaaaggcacaccttg-taaaatagaccttcatgaaaagaggtgggtctattgtagcaaacc 8652108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 8653900 - 8653951
Alignment:
Q  1 aacattaatgatcaaaagtaaattacaattttgtcccttccttttgtctttct 53  Q
    |||||||||||| ||||  |||||||| ||||||||||||||||| |||||||    
T  8653900 aacattaatgat-aaaataaaattacacttttgtcccttccttttctctttct 8653951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 14460129 - 14460201
Alignment:
Q  74 ttttggtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaa 146  Q
    |||| ||||||| ||||||||||   ||||||||||||| ||||||||||   ||| | ||||||||||||||    
T  14460129 ttttagtccaaatgaaaaggtgctaattgctaaaatagaccttcataaaataaagttgatctattgtagcaaa 14460201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 87 - 149
Target Start/End: Complemental strand, 45392 - 45330
Alignment:
Q  87 gaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaaccc 149  Q
    ||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  45392 gaaaaggtgcatcttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaaccc 45330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 29375033 - 29375113
Alignment:
Q  68 tggatattttggtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacc 148  Q
    |||||||||| ||||||  |||||||||| |||||||||||| || |||||| ||||||||||| ||||||||||||||||    
T  29375033 tggatatttttgtccaagtgaaaaggtgctccttgctaaaatggaccttcatgaaaatgagtggatctattgtagcaaacc 29375113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 5860596 - 5860546
Alignment:
Q  100 ttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccc 150  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  5860596 ttgctaaaatacaccttcataaaaatgagtgggtctattgtagcaaacccc 5860546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 17279930 - 17279872
Alignment:
Q  100 ttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaaccccttgaaaaa 158  Q
    ||||||||||||| |||||||||||||| | |||||||||||||||||||||| |||||    
T  17279930 ttgctaaaatagaccttcataaaaatgaataggtctattgtagcaaacccctttaaaaa 17279872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 19237625 - 19237674
Alignment:
Q  100 ttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaaccc 149  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  19237625 ttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaaccc 19237674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 8683878 - 8683929
Alignment:
Q  100 ttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccct 151  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||| ||||    
T  8683878 ttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaaaccct 8683929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 10792550 - 10792479
Alignment:
Q  79 gtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccc 150  Q
    ||||||| |||||||||   |||||||||||||| ||||||||||  || ||||||||||||||||||||||    
T  10792550 gtccaaatgaaaaggtgttgcttgctaaaatagaccttcataaaatggaatgggtctattgtagcaaacccc 10792479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 28522679 - 28522618
Alignment:
Q  88 aaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaaccc 149  Q
    |||||||||| | |||||||||||| ||||| ||||  ||||||||||||||||||||||||    
T  28522679 aaaaggtgcatcctgctaaaatagagcttcacaaaatagagtgggtctattgtagcaaaccc 28522618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 400
Target Start/End: Complemental strand, 3724085 - 3723977
Alignment:
Q  292 aatgataaatgaacacaaaaatacatacacaaatatgacactagggacaattgtgtaatttccattaaagtctaatggcacaattgatatttcaatgaaa 391  Q
    ||||||||||||||||||||||||| ||||||||| ||||  | ||  ||||||||||||||| | |||  ||||||||| ||| || ||| |||   ||    
T  3724085 aatgataaatgaacacaaaaatacagacacaaatacgacatcaagggtaattgtgtaatttccttaaaaaactaatggcataatagaaattccaactgaa 3723986  T
Q  392 aatgagggg 400  Q
    |||||||||    
T  3723985 aatgagggg 3723977  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 10793600 - 10793652
Alignment:
Q  99 cttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccct 151  Q
    |||||||||||||| ||| ||||||  ||||||||||||||||||||||||||    
T  10793600 cttgctaaaatagaccttgataaaatggagtgggtctattgtagcaaacccct 10793652  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 5860403 - 5860454
Alignment:
Q  3 cattaatgatcaaaagtaaattacaattttgtcccttccttttgtctttctc 54  Q
    |||||||||| || | |||||||||| |||||||||||||||||||||||||    
T  5860403 cattaatgattaagactaaattacaactttgtcccttccttttgtctttctc 5860454  T

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Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 150
Target Start/End: Original strand, 28523366 - 28523428
Alignment:
Q  88 aaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccc 150  Q
    |||||||||| |||||||||||||| ||||| ||||  || ||||||||||| ||||||||||    
T  28523366 aaaaggtgcatcttgctaaaatagaccttcacaaaatagaatgggtctattgcagcaaacccc 28523428  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 150
Target Start/End: Complemental strand, 8238100 - 8238065
Alignment:
Q  115 ttcataaaaatgagtgggtctattgtagcaaacccc 150  Q
    |||||||||||||||| |||||||||||||||||||    
T  8238100 ttcataaaaatgagtgagtctattgtagcaaacccc 8238065  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 12441716 - 12441774
Alignment:
Q  88 aaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaa 146  Q
    |||||||||| ||||||||||| || |||||| ||||   |||||||||||||||||||    
T  12441716 aaaaggtgcatcttgctaaaatggaccttcatgaaaagaggtgggtctattgtagcaaa 12441774  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 17280721 - 17280767
Alignment:
Q  100 ttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaa 146  Q
    ||||||||||||| ||| || |||||||||||||| |||||||||||    
T  17280721 ttgctaaaatagaccttaatgaaaatgagtgggtcaattgtagcaaa 17280767  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 88 - 150
Target Start/End: Original strand, 39240864 - 39240926
Alignment:
Q  88 aaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccc 150  Q
    |||||||||| |||||||||||||| |||||| |||||| |||||||||||||||||||||||    
T  39240864 aaaaggtgcatcttgctaaaatagaccttcatgaaaatgggtgggtctattgtagcaaacccc 39240926  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 9244066 - 9243990
Alignment:
Q  74 ttttggtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccc 150  Q
    |||||||||||| |||||||||| |  |||||||||||| ||||||||||   ||||||||||||||||||||||||    
T  9244066 ttttggtccaaatgaaaaggtgctcggtgctaaaatagaccttcataaaatgaagtgggtctattgtagcaaacccc 9243990  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 18237624 - 18237693
Alignment:
Q  79 gtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacc 148  Q
    ||||||| ||||||||||| |||||||||||||| ||||| ||||  |||||||||||||||| ||||||    
T  18237624 gtccaaaggaaaaggtgcatcttgctaaaatagaccttcacaaaatagagtgggtctattgtaacaaacc 18237693  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 18236724 - 18236653
Alignment:
Q  79 gtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccc 150  Q
    ||||||| ||||||||||| |||||||||||||| ||||| ||||  ||| ||||||||| |||||||||||    
T  18236724 gtccaaaggaaaaggtgcatcttgctaaaatagaccttcacaaaatagagcgggtctattatagcaaacccc 18236653  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 18767591 - 18767639
Alignment:
Q  100 ttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacc 148  Q
    ||||||||||||| ||| ||||||||||||| |||||||||||||||||    
T  18767591 ttgctaaaatagacctttataaaaatgagtgagtctattgtagcaaacc 18767639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 139
Target Start/End: Complemental strand, 9244289 - 9244251
Alignment:
Q  101 tgctaaaatagatcttcataaaaatgagtgggtctattg 139  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  9244289 tgctaaaatagaccttcataaaaatgagtgggtctattg 9244251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 151
Target Start/End: Original strand, 45631150 - 45631212
Alignment:
Q  89 aaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccct 151  Q
    ||||||| | |||||||||||||| ||||||||||   ||||||||||||||| |||||||||    
T  45631150 aaaggtgtagcttgctaaaatagaccttcataaaatgaagtgggtctattgtaacaaacccct 45631212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 32667406 - 32667456
Alignment:
Q  100 ttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccc 150  Q
    ||||||||||||| |||||  |||| | |||||||||||||||||||||||    
T  32667406 ttgctaaaatagaccttcaagaaaaagggtgggtctattgtagcaaacccc 32667456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 29558192 - 29558160
Alignment:
Q  106 aaatagatcttcataaaaatgagtgggtctatt 138  Q
    ||||||| |||||||||||||||||||||||||    
T  29558192 aaatagaccttcataaaaatgagtgggtctatt 29558160  T

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Target: scaffold0676 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0676
Description:

Target: scaffold0676; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 3231 - 3168
Alignment:
Q  77 tggtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgt 140  Q
    |||||||||| |||||||||| |||||||||||||| |||||| |||||||| |||||||||||    
T  3231 tggtccaaaataaaaggtgcatcttgctaaaatagaccttcatgaaaatgagcgggtctattgt 3168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 33471232 - 33471161
Alignment:
Q  79 gtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccc 150  Q
    ||||||| |||||||||    ||||||||||||| |||||| ||||||| ||||||||||||||||||||||    
T  33471232 gtccaaatgaaaaggtgttggttgctaaaatagaccttcatgaaaatgaatgggtctattgtagcaaacccc 33471161  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 30667922 - 30667861
Alignment:
Q  88 aaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaaccc 149  Q
    ||||||||||||||||||||||| | |||||| ||||   ||||||||||||||||||||||    
T  30667922 aaaaggtgcaccttgctaaaatataccttcatgaaaaaaggtgggtctattgtagcaaaccc 30667861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 151
Target Start/End: Original strand, 33471849 - 33471926
Alignment:
Q  74 ttttggtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccct 151  Q
    |||| ||||||| ||||||||||   ||||||||||||| ||||||||||   |||||||||||||||||||| ||||    
T  33471849 ttttagtccaaatgaaaaggtgctagttgctaaaatagaccttcataaaatgaagtgggtctattgtagcaaaaccct 33471926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 331
Target Start/End: Original strand, 37600332 - 37600376
Alignment:
Q  287 acagcaatgataaatgaacacaaaaatacatacacaaatatgaca 331  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||    
T  37600332 acaggaatgataaatggacacaaaaatacatacacaaatacgaca 37600376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 147
Target Start/End: Complemental strand, 23989603 - 23989568
Alignment:
Q  112 atcttcataaaaatgagtgggtctattgtagcaaac 147  Q
    |||||| |||||||||||||||||||||||||||||    
T  23989603 atcttcgtaaaaatgagtgggtctattgtagcaaac 23989568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 22671648 - 22671603
Alignment:
Q  104 taaaatagatcttcataaaaatgagtgggtctattgtagcaaacccc 150  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||    
T  22671648 taaaatagaccttcatgaaaatgagtgggtc-attgtagcaaacccc 22671603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 24775 - 24728
Alignment:
Q  99 cttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaa 146  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||||    
T  24775 cttgttaaaatagaacttcatgaaaatgagtgggtctattgtagcaaa 24728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 35061 - 35003
Alignment:
Q  88 aaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaa 146  Q
    |||||||||| | |||||||||||| |||||| ||||   |||||||||||||||||||    
T  35061 aaaaggtgcatcatgctaaaatagaccttcatgaaaaaaggtgggtctattgtagcaaa 35003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 162535 - 162459
Alignment:
Q  74 ttttggtccaaaagaaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctattgtagcaaacccc 150  Q
    |||||||||||| |||||||||||   || |||||| || ||||| |||||   |||||||||||||||||||||||    
T  162535 ttttggtccaaatgaaaaggtgcatgatgttaaaatggaccttcacaaaaagaggtgggtctattgtagcaaacccc 162459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0550 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0550
Description:

Target: scaffold0550; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 137
Target Start/End: Complemental strand, 5652 - 5603
Alignment:
Q  88 aaaaggtgcaccttgctaaaatagatcttcataaaaatgagtgggtctat 137  Q
    |||||||||||  ||| |||||||| |||||||||| |||||||||||||    
T  5652 aaaaggtgcactatgcaaaaatagaccttcataaaattgagtgggtctat 5603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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