View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12099_low_4 (Length: 410)
Name: NF12099_low_4
Description: NF12099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12099_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 92 - 406
Target Start/End: Complemental strand, 42038840 - 42038526
Alignment:
| Q |
92 |
gtacatgttcagtatcacactgactaagtgagtgactttgccacaatcacatgggctcaacgtgattctggcaaaaccaccgtgatatcagacacgtact |
191 |
Q |
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| T |
42038840 |
gtacatgttcagtatcccagtgactaagtcagtgactttgccacaatcacatcggctcaacgtgattctggcaaaaccactgtgatatcagacacgtact |
42038741 |
T |
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| Q |
192 |
tagtgtggttgtacctttgacattgccatgaccatagatgtgcaattgatccaacggtggaggaagctgtgatggatgacaattgtcatagtatggccaa |
291 |
Q |
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| T |
42038740 |
tagtgtggttgtacctttgacattgccatgaccatagatgtgcaattgatccaacggtggaggaagctgtgatggatgacaattgtcatagtatggccaa |
42038641 |
T |
|
| Q |
292 |
gatgcaatggagttgcagcagatgtaggtgtatggtacacctgattcctcaatcacacgtctaaccaaacgtttctgtttgtacattgctaggcctggct |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42038640 |
gatgcaatggagttgcagcagatgtaggtgtatggtacacctgattcctcaatcacacgtctaaccaaacgtttctgtttgtacattgcaaggcctggct |
42038541 |
T |
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| Q |
392 |
ccacaggttctgctc |
406 |
Q |
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||||||| ||||||| |
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| T |
42038540 |
ccacaggatctgctc |
42038526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 42038963 - 42038845
Alignment:
| Q |
1 |
tcaacaaagtaagctgcacaatcaatcacattctatatgttaaattaatactaatatgatattattatgattgatgtgtgacaaagaatcggtacatgtt |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42038963 |
tcaacaaagtacgctgcacaatcaatcacattctatatgttaaattaatactaatatgatattattatgattgatgtgtgacaaagaatcggtacatgtt |
42038864 |
T |
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| Q |
101 |
cagtatcacactgactaag |
119 |
Q |
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| T |
42038863 |
cagtatcacagtgactaag |
42038845 |
T |
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