View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12099_low_8 (Length: 286)

Name: NF12099_low_8
Description: NF12099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12099_low_8
NF12099_low_8
[»] chr6 (13 HSPs)
chr6 (14-279)||(26890735-26891000)
chr6 (87-278)||(27713769-27713960)
chr6 (132-265)||(26853961-26854094)
chr6 (176-263)||(26631760-26631847)
chr6 (176-263)||(26737735-26737822)
chr6 (144-261)||(27422277-27422394)
chr6 (165-265)||(27651942-27652041)
chr6 (186-278)||(26966390-26966482)
chr6 (191-279)||(31289542-31289630)
chr6 (93-147)||(27651844-27651898)
chr6 (77-150)||(26641217-26641290)
chr6 (77-150)||(26747183-26747256)
chr6 (81-150)||(26828715-26828784)
[»] scaffold0349 (1 HSPs)
scaffold0349 (87-278)||(17984-18175)
[»] chr8 (1 HSPs)
chr8 (87-281)||(29269635-29269829)
[»] scaffold0003 (1 HSPs)
scaffold0003 (144-261)||(64969-65086)
[»] chr4 (4 HSPs)
chr4 (76-158)||(18682705-18682787)
chr4 (108-158)||(18650319-18650369)
chr4 (109-158)||(18718539-18718588)
chr4 (80-124)||(18692037-18692081)
[»] chr2 (1 HSPs)
chr2 (102-158)||(946412-946469)


Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 14 - 279
Target Start/End: Complemental strand, 26891000 - 26890735
Alignment:
Q  14 caaacagtcgagcctcgtgtgtccagggtgaaaaggcattcattcacatcatcataccagaaagagattgtgatgaaccatctgtcagtatcacaatatg 113  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26891000 caaacagtcgagcctcttgtgtccagggtgaaaaggcattcattcacattatcataccagaaagagattgtgatgaaccatctgtcagtatcacaatatg 26890901  T
Q  114 tacaaactcttgtactcttaaaagcaaattaatcatacatacatgttttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26890900 tacaaactcttgtactcttaaaagcaaattaatcatacatacatgtgttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgt 26890801  T
Q  214 ttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaggttctg 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26890800 ttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaagttctg 26890735  T

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Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 87 - 278
Target Start/End: Original strand, 27713769 - 27713960
Alignment:
Q  87 tgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatgttttgctgctgctacataagttctgtct 186  Q
    |||| |||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| | ||| |||||||||| |||||||||||    
T  27713769 tgaaacatctgtcggtatcacaatatgtacatactcttgtattattaaaagcaaattaatcatacatacatatgttgttgctgctacacaagttctgtct 27713868  T
Q  187 cagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaggttct 278  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||| ||| | ||||||||||||  ||||| |||||    
T  27713869 cagaaaactgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagacatacagtgttgttgctgctacacaagttct 27713960  T

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Target: chr6; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 132 - 265
Target Start/End: Complemental strand, 26854094 - 26853961
Alignment:
Q  132 taaaagcaaattaatcatacatacatgttttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataact 231  Q
    |||||| |||||||||||||||| |||| || ||||| ||||  |||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||    
T  26854094 taaaaggaaattaatcatacatatatgtgtttctgctcctacgcaagttctgtctcagaaaactgacttggcagaaaattgtttttacacaagaataact 26853995  T
Q  232 tattaatcacaagagccattcggtgttgttgctg 265  Q
    ||||||||||||||||||| | ||||||||||||    
T  26853994 tattaatcacaagagccatacagtgttgttgctg 26853961  T

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Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 176 - 263
Target Start/End: Complemental strand, 26631847 - 26631760
Alignment:
Q  176 aagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgc 263  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| |  |||||||||    
T  26631847 aagttctgtctcagaaaacagatttgggagaaaagtgtttttacacaagaataccttattaatcacaagagccatacaatgttgttgc 26631760  T

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Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 176 - 263
Target Start/End: Complemental strand, 26737822 - 26737735
Alignment:
Q  176 aagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgc 263  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| |  |||||||||    
T  26737822 aagttctgtctcagaaaacagatttgggagaaaagtgtttttacacaagaataccttattaatcacaagagccatacaatgttgttgc 26737735  T

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Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 261
Target Start/End: Original strand, 27422277 - 27422394
Alignment:
Q  144 aatcatacatacatgttttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaa 243  Q
    |||||||||||||| | ||| |||||| ||| |||||||||  ||||||| ||||||||||||||| || ||||||| ||||||| ||||||||| ||||    
T  27422277 aatcatacatacatttgttgttgctgcgacacaagttctgttgcagaaaaatgatttggcagaaaactgcttttacacaagaataccttattaattacaa 27422376  T
Q  244 gagccattcggtgttgtt 261  Q
    ||||||| | ||||||||    
T  27422377 gagccatacagtgttgtt 27422394  T

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Target: chr6; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 165 - 265
Target Start/End: Original strand, 27651942 - 27652041
Alignment:
Q  165 tgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgct 264  Q
    |||||||| | ||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||  || | |||||||||||    
T  27651942 tgctgctaaacaagttctgtctca-aaaactgatttggcagaaaagtgtttttacacatgaataacttattaatcacaaaagttatacagtgttgttgct 27652040  T

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Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 186 - 278
Target Start/End: Complemental strand, 26966482 - 26966390
Alignment:
Q  186 tcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaggttct 278  Q
    |||||||||||||||||||| |||||||||||||| ||||||| |||||||||| |||||||||| | || |||||||||  ||||| |||||    
T  26966482 tcagaaaactgatttggcagcaaagtgtttttacacaagaataccttattaatctcaagagccatacagttttgttgctgctacacaagttct 26966390  T

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Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 191 - 279
Target Start/End: Complemental strand, 31289630 - 31289542
Alignment:
Q  191 aaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaggttctg 279  Q
    |||||||  ||||||| ||||||||||||| ||||||| ||||||||||||||||||||| | |||||||| |||  ||||||||||||    
T  31289630 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 31289542  T

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Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 27651844 - 27651898
Alignment:
Q  93 atctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatc 147  Q
    ||||||||||||| ||||||||||||||||||||| || ||||||||||||||||    
T  27651844 atctgtcagtatcgcaatatgtacaaactcttgtattcgtaaaagcaaattaatc 27651898  T

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Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 26641290 - 26641217
Alignment:
Q  77 gagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcata 150  Q
    |||||||||||||||||||||||| ||||||| |||||| |||| |||||| || ||||| ||| |||||||||    
T  26641290 gagattgtgatgaaccatctgtcaatatcacagtatgtagaaacacttgtattcctaaaatcaatttaatcata 26641217  T

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Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 26747256 - 26747183
Alignment:
Q  77 gagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcata 150  Q
    |||||||||||||||||||||||| ||||||| |||||| |||| |||||| || ||||| ||| |||||||||    
T  26747256 gagattgtgatgaaccatctgtcaatatcacagtatgtagaaacacttgtattcctaaaatcaatttaatcata 26747183  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 26828784 - 26828715
Alignment:
Q  81 ttgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcata 150  Q
    |||||| |||| |||| ||| ||||||| ||||||||||| |||||| || |||| |||| |||||||||    
T  26828784 ttgtgaggaactatctttcaatatcacagtatgtacaaacacttgtattcctaaaggcaatttaatcata 26828715  T

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Target: scaffold0349 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 87 - 278
Target Start/End: Complemental strand, 18175 - 17984
Alignment:
Q  87 tgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatgttttgctgctgctacataagttctgtct 186  Q
    |||| |||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| | ||| |||||||||| |||||||||||    
T  18175 tgaaacatctgtcggtatcacaatatgtacatactcttgtattattaaaagcaaattaatcatacatacatatgttgttgctgctacacaagttctgtct 18076  T
Q  187 cagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaggttct 278  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||| ||| | ||||||||||||  ||||| |||||    
T  18075 cagaaaactgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagacatacagtgttgttgctgctacacaagttct 17984  T

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Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 87 - 281
Target Start/End: Original strand, 29269635 - 29269829
Alignment:
Q  87 tgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatgttttgctgctgctacataagttctgtct 186  Q
    |||| |||| ||| |||||||||||| |||| ||||||||| | ||||||||||||||||||| ||||||| | ||| |||||||||| |||||||||||    
T  29269635 tgaaacatcagtcggtatcacaatatctacatactcttgtattattaaaagcaaattaatcatgcatacatatgttgttgctgctacacaagttctgtct 29269734  T
Q  187 cagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaggttctgct 281  Q
    | ||||| |||||||||||| ||||||||||||| |||||||||||| |||||||||||||||| | ||||||||||||  ||||| ||||||||    
T  29269735 ctgaaaagtgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagccatacagtgttgttgctgctacacaagttctgct 29269829  T

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Target: scaffold0003 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 261
Target Start/End: Complemental strand, 65086 - 64969
Alignment:
Q  144 aatcatacatacatgttttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaa 243  Q
    |||||||||||||| | ||| |||||| ||| |||||||||  ||||||| ||||||||||||||| || ||||||| ||||||| ||||||||| ||||    
T  65086 aatcatacatacatttgttgttgctgcgacacaagttctgttgcagaaaaatgatttggcagaaaactgcttttacacaagaataccttattaattacaa 64987  T
Q  244 gagccattcggtgttgtt 261  Q
    ||||||| | ||||||||    
T  64986 gagccatacagtgttgtt 64969  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 158
Target Start/End: Original strand, 18682705 - 18682787
Alignment:
Q  76 agagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatg 158  Q
    ||||||||||| ||||||||| || |||| | |||||||||| ||||||||| |||||||||||| |||||||||||||||||    
T  18682705 agagattgtgacgaaccatctatcggtatgaaaatatgtacatactcttgtattcttaaaagcaatttaatcatacatacatg 18682787  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 18650319 - 18650369
Alignment:
Q  108 aatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatg 158  Q
    |||||||||| ||||||||| |||||||||||| |||||||||||||||||    
T  18650319 aatatgtacatactcttgtattcttaaaagcaatttaatcatacatacatg 18650369  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 18718539 - 18718588
Alignment:
Q  109 atatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatg 158  Q
    ||||||||| ||||||||| |||||||||||| |||||||||||||||||    
T  18718539 atatgtacatactcttgtattcttaaaagcaatttaatcatacatacatg 18718588  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 18692037 - 18692081
Alignment:
Q  80 attgtgatgaaccatctgtcagtatcacaatatgtacaaactctt 124  Q
    |||||||||||||||||||| |||| | |||||||||||||||||    
T  18692037 attgtgatgaaccatctgtcggtatgaaaatatgtacaaactctt 18692081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 946412 - 946469
Alignment:
Q  102 tatcacaatatgtacaaactcttgta-ctcttaaaagcaaattaatcatacatacatg 158  Q
    ||||| |||||||||||||||||| | |||||||||||||  |||||| |||||||||    
T  946412 tatcaaaatatgtacaaactcttgcatctcttaaaagcaatctaatcacacatacatg 946469  T

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