View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12099_low_9 (Length: 282)
Name: NF12099_low_9
Description: NF12099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12099_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 25 - 268
Target Start/End: Original strand, 7483903 - 7484146
Alignment:
| Q |
25 |
gacatgtattatttgccttgcctggagtacatatgcaacgataacaatagtgataactcatcatcatgttgtgcgtcactcacatatatagttctcattg |
124 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
7483903 |
gacatgtataatttgccttgcctggagtacataatcaatgatagcaatagtgataactcatcatcattttgtgcgtcactcacatatatagttctctttc |
7484002 |
T |
|
| Q |
125 |
agttaacaaatctaaaaggatggtgtaagtgtagcgaagaagaaatctcaaggggttgttgtcatcaatttcagagtcttgaaaccttattgattaatga |
224 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7484003 |
agttaaataatcttaaaggatggtgtaagtgtagcgaagaagaaatctcaaggggttgttgtcatcagtttcagagtcttgaaaccttattgattaatga |
7484102 |
T |
|
| Q |
225 |
ttgttataagctagtttcaattccacaacacacatgtatcaggg |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7484103 |
ttgttataagctagtttcaattccacaacacacatatatcaggg |
7484146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 26 - 268
Target Start/End: Original strand, 7521961 - 7522203
Alignment:
| Q |
26 |
acatgtattatttgccttgcctggagtacatatgcaacgataacaatagtgataactcatcatcatgttgtgcgtcactcacatatatagttctcattga |
125 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || | |
|
|
| T |
7521961 |
acatgtataatttgccttgtctggagtacatagtgaatgataacaatagtgataactcatcatcattttgtgcgtcactcacatatatagttctctttca |
7522060 |
T |
|
| Q |
126 |
gttaacaaatctaaaaggatggtgtaagtgtagcgaagaagaaatctcaaggggttgttgtcatcaatttcagagtcttgaaaccttattgattaatgat |
225 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
7522061 |
gttaactaatcttaaaggatggtgtaagtgtagcgaagaagaaatctcaaggggttgttgtcatcagtttcagagtcttgaaaccttaatgattaatgat |
7522160 |
T |
|
| Q |
226 |
tgttataagctagtttcaattccacaacacacatgtatcaggg |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7522161 |
tgttataagctagtttcaattccacaacacacatatatcaggg |
7522203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 35 - 256
Target Start/End: Original strand, 7530038 - 7530259
Alignment:
| Q |
35 |
atttgccttgcctggagtacatatgcaacgataacaatagtgataactcatcatcatgttgtgcgtcactcacatatatagttctcattgagttaacaaa |
134 |
Q |
| |
|
||||||||||||||||||||||| || |||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
7530038 |
atttgccttgcctggagtacatagtgaatgatagcaatagtgataactcatcatcatcttgtgcgtcactcacagatatagttctcattctgttaacaaa |
7530137 |
T |
|
| Q |
135 |
tctaaaaggatggtgtaagtgtagcgaagaagaaatctcaaggggttgttgtcatcaatttcagagtcttgaaaccttattgattaatgattgttataag |
234 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| ||| || ||||| ||| |
|
|
| T |
7530138 |
tcttaaaggatggtgtaagtgtagcgaagaagaaatctcaaggggttgttgtcatcagtttcagagtcttaaaagattatcaatttctggttgttgtaat |
7530237 |
T |
|
| Q |
235 |
ctagtttcaattccacaacaca |
256 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
7530238 |
ctagtttcaattccacaacaca |
7530259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 28 - 256
Target Start/End: Original strand, 7496305 - 7496533
Alignment:
| Q |
28 |
atgtattatttgccttgcctggagtacatatgcaacgataacaatagtgataactcatcatcatgttgtgcgtcactcacatatatagttctcattgagt |
127 |
Q |
| |
|
|||||| | ||||||||||||||||||||| || |||| ||||||||||||||||||||||| |||||||||||||||| |||||| |||| || ||| |
|
|
| T |
7496305 |
atgtataagttgccttgcctggagtacatagtgaatgatagcaatagtgataactcatcatcattttgtgcgtcactcacagatatagctctctttcagt |
7496404 |
T |
|
| Q |
128 |
taacaaatctaaaaggatggtgtaagtgtagcgaagaagaaatctcaaggggttgttgtcatcaatttcagagtcttgaaaccttattgattaatgattg |
227 |
Q |
| |
|
||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||| |||||| |||| |
|
|
| T |
7496405 |
taaataatcttaaaggatggtgtaattgtagcgaagaagaaatctcaaggggttgtcgtcatcagtttcagagtcttgaaagattatcgattaaatattg |
7496504 |
T |
|
| Q |
228 |
ttataagctagtttcaattccacaacaca |
256 |
Q |
| |
|
| ||| |||||||||||||||||||||| |
|
|
| T |
7496505 |
tcctaatctagtttcaattccacaacaca |
7496533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 26 - 268
Target Start/End: Complemental strand, 7720503 - 7720261
Alignment:
| Q |
26 |
acatgtattatttgccttgcctggagtacatatgcaacgataacaatagtgataactcatcatcatgttgtgcgtcactcacatatatagttctcattga |
125 |
Q |
| |
|
|||||| | ||||||| ||||| |||||||| || |||||||||||||||||||||||||||| |||||||||||| | | ||||| |||| ||| |
|
|
| T |
7720503 |
acatgtttgatttgccatgcctagagtacattgttaatgataacaatagtgataactcatcatcattttgtgcgtcacttaaagatatatttctttttgg |
7720404 |
T |
|
| Q |
126 |
gttaacaaatctaaaaggatggtgtaagtgtagcgaagaagaaatctcaaggggttgttgtcatcaatttcagagtcttgaaaccttattgattaatgat |
225 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| | |||||||||| ||||| ||| || | |
|
|
| T |
7720403 |
gttaacaaatctaaaaggatggtgtaactgtagcgaagaagaaatctcaaggggttgttgtcatcagtttaacagtcttgaaagcttatgtatttctgtt |
7720304 |
T |
|
| Q |
226 |
tgttataagctagtttcaattccacaacacacatgtatcaggg |
268 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
7720303 |
tgttgtaatctagtttcaattccacaacacacatatatcaggg |
7720261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 35 - 256
Target Start/End: Complemental strand, 7716664 - 7716443
Alignment:
| Q |
35 |
atttgccttgcctggagtacatatgcaacgataacaatagtgataactcatcatcatgttgtgcgtcactcacatatatagttctcattgagttaacaaa |
134 |
Q |
| |
|
||||| || |||| |||| |||| ||| |||||||||||||||||||||||||||| |||| ||||||| ||| ||||| |||| ||||||| || |
|
|
| T |
7716664 |
atttggctcgcctagagttcatagtcaatgataacaatagtgataactcatcatcattttgtacgtcacttacagatatatttctttccgagttaaataa |
7716565 |
T |
|
| Q |
135 |
tctaaaaggatggtgtaagtgtagcgaagaagaaatctcaaggggttgttgtcatcaatttcagagtcttgaaaccttattgattaatgattgttataag |
234 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| | || ||||||| ||||| ||| | ||||||||||| |
|
|
| T |
7716564 |
tcttaaaggatggtgtaactgtagcgaagaagaaatctcaaggggctgttgtcatcagtttgaaagacttgaaaacttatgtattcaagattgttataat |
7716465 |
T |
|
| Q |
235 |
ctagtttcaattccacaacaca |
256 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
7716464 |
ctagtttcaattccacaacaca |
7716443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 85 - 265
Target Start/End: Original strand, 7502552 - 7502732
Alignment:
| Q |
85 |
tcatcatgttgtgcgtcactcacatatatagttctcattgagttaacaaatctaaaaggatggtgtaagtgtagcgaagaagaaatctcaaggggttgtt |
184 |
Q |
| |
|
||||||| |||||||| ||||||||||||| || | |||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
7502552 |
tcatcattttgtgcgttactcacatatatatatccttctcagttaagaaatctaaaaggatggtgtaactgtagcaaagaagaaatctcaaggggttgta |
7502651 |
T |
|
| Q |
185 |
gtcatcaatttcagagtcttgaaaccttattgattaatgattgttataagctagtttcaattccacaacacacatgtatca |
265 |
Q |
| |
|
||||||| | ||||||| ||||| ||||| |||| |||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
7502652 |
gtcatcagtctcagagtattgaatacttatcgattgatgattgttataagctagtttcaattcctcaacacacatatatca |
7502732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 135 - 256
Target Start/End: Complemental strand, 7127128 - 7127007
Alignment:
| Q |
135 |
tctaaaaggatggtgtaagtgtagcgaagaagaaatctcaaggggttgttgtcatcaatttcagagtcttgaaaccttattgattaatgattgttataag |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||| |||| | ||||| ||| |
|
|
| T |
7127128 |
tctaaaaggatggtgtaagtgtagcgaagaagagatctcaaggggttgttgtcatcagtttcagagtcttgaaagattatcgattgaatattgtcctaac |
7127029 |
T |
|
| Q |
235 |
ctagtttcaattccacaacaca |
256 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
7127028 |
ctagtttcaattccacaacaca |
7127007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 246
Target Start/End: Complemental strand, 7723461 - 7723367
Alignment:
| Q |
152 |
agtgtagcgaagaagaaatctcaaggggttgttgtcatcaatttcagagtcttgaaaccttattgattaatgattgttataagctagtttcaatt |
246 |
Q |
| |
|
|||||||| |||||||||| |||| |||||||||| |||| ||| | |||||||||| |||| |||| | ||||||||||| ||| |||||||| |
|
|
| T |
7723461 |
agtgtagcaaagaagaaatttcaaagggttgttgtaatcagtttaacagtcttgaaaacttaaggattcaagattgttataatctaatttcaatt |
7723367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University