View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12100_high_2 (Length: 391)

Name: NF12100_high_2
Description: NF12100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12100_high_2
NF12100_high_2
[»] chr8 (11 HSPs)
chr8 (142-328)||(8766899-8767077)
chr8 (28-112)||(19756395-19756478)
chr8 (37-132)||(28300125-28300220)
chr8 (55-141)||(42445783-42445869)
chr8 (50-107)||(1028780-1028837)
chr8 (31-92)||(8766790-8766851)
chr8 (50-98)||(13147732-13147780)
chr8 (50-139)||(9429738-9429827)
chr8 (346-378)||(8767095-8767127)
chr8 (1-39)||(8766745-8766783)
chr8 (55-105)||(24182629-24182679)
[»] chr3 (14 HSPs)
chr3 (55-134)||(54240640-54240719)
chr3 (61-141)||(9737575-9737655)
chr3 (50-132)||(38745281-38745363)
chr3 (35-99)||(11988906-11988968)
chr3 (51-99)||(52910377-52910425)
chr3 (61-99)||(41259952-41259990)
chr3 (49-98)||(51829544-51829593)
chr3 (56-113)||(36786566-36786624)
chr3 (67-113)||(21177040-21177086)
chr3 (61-98)||(6757309-6757346)
chr3 (59-116)||(12111035-12111092)
chr3 (70-99)||(17002967-17002996)
chr3 (56-104)||(33440042-33440090)
chr3 (31-71)||(42909162-42909202)
[»] chr2 (13 HSPs)
chr2 (56-113)||(14368410-14368467)
chr2 (39-95)||(20156979-20157035)
chr2 (55-98)||(37123628-37123671)
chr2 (50-132)||(34319803-34319885)
chr2 (39-95)||(34028164-34028219)
chr2 (64-132)||(44287829-44287897)
chr2 (56-116)||(31068887-31068947)
chr2 (61-99)||(8915635-8915673)
chr2 (61-99)||(38690796-38690834)
chr2 (76-113)||(9198943-9198980)
chr2 (68-113)||(9932020-9932065)
chr2 (60-89)||(32087341-32087370)
chr2 (71-99)||(9294131-9294159)
[»] chr4 (21 HSPs)
chr4 (37-141)||(31351648-31351752)
chr4 (61-141)||(35010382-35010462)
chr4 (36-139)||(25273044-25273145)
chr4 (36-99)||(28091303-28091366)
chr4 (49-95)||(9460236-9460282)
chr4 (50-104)||(13538243-13538297)
chr4 (63-141)||(35130612-35130690)
chr4 (57-94)||(54733272-54733309)
chr4 (65-141)||(3746390-3746465)
chr4 (61-132)||(38415494-38415565)
chr4 (50-97)||(49479529-49479576)
chr4 (36-99)||(50263964-50264027)
chr4 (50-132)||(17882233-17882313)
chr4 (61-104)||(42721498-42721543)
chr4 (55-100)||(42657572-42657617)
chr4 (66-106)||(1939999-1940039)
chr4 (50-98)||(7921656-7921704)
chr4 (61-116)||(40981785-40981840)
chr4 (61-99)||(45333451-45333491)
chr4 (61-99)||(45341141-45341181)
chr4 (64-104)||(38438367-38438407)
[»] chr7 (20 HSPs)
chr7 (50-132)||(47684475-47684557)
chr7 (55-97)||(7683451-7683493)
chr7 (41-98)||(25091232-25091289)
chr7 (50-99)||(27227252-27227301)
chr7 (56-113)||(27744635-27744692)
chr7 (55-132)||(32958527-32958604)
chr7 (66-134)||(13054631-13054699)
chr7 (61-141)||(37307688-37307768)
chr7 (39-95)||(40097893-40097949)
chr7 (33-141)||(45725094-45725202)
chr7 (50-104)||(9667219-9667273)
chr7 (61-99)||(23198524-23198562)
chr7 (61-106)||(24250145-24250190)
chr7 (50-99)||(44165875-44165923)
chr7 (36-107)||(23982078-23982149)
chr7 (56-102)||(29551166-29551212)
chr7 (61-139)||(45967360-45967438)
chr7 (61-98)||(30745962-30745999)
chr7 (61-98)||(41780531-41780568)
chr7 (60-96)||(39584252-39584288)
[»] chr6 (10 HSPs)
chr6 (39-105)||(12654474-12654540)
chr6 (61-116)||(8176965-8177020)
chr6 (35-139)||(20599370-20599469)
chr6 (56-118)||(21023680-21023742)
chr6 (61-130)||(7339536-7339604)
chr6 (55-99)||(7326324-7326368)
chr6 (61-99)||(5925652-5925690)
chr6 (61-99)||(6922633-6922671)
chr6 (57-99)||(12606721-12606763)
chr6 (60-99)||(24896867-24896906)
[»] chr5 (13 HSPs)
chr5 (37-99)||(30327726-30327788)
chr5 (63-132)||(20706543-20706612)
chr5 (50-139)||(32398247-32398336)
chr5 (56-113)||(43405998-43406055)
chr5 (51-98)||(5002005-5002052)
chr5 (61-132)||(8032897-8032968)
chr5 (50-141)||(24793503-24793594)
chr5 (67-113)||(31478693-31478739)
chr5 (50-98)||(28282407-28282455)
chr5 (37-99)||(15409223-15409285)
chr5 (65-106)||(39968978-39969019)
chr5 (56-104)||(10524881-10524929)
chr5 (35-71)||(22599905-22599941)
[»] chr1 (7 HSPs)
chr1 (61-113)||(2098802-2098854)
chr1 (39-95)||(1927612-1927668)
chr1 (61-141)||(8757273-8757353)
chr1 (60-98)||(2661631-2661669)
chr1 (60-100)||(35997048-35997088)
chr1 (37-104)||(13350821-13350888)
chr1 (68-141)||(19175123-19175196)
[»] scaffold0178 (1 HSPs)
scaffold0178 (62-112)||(9703-9753)
[»] scaffold0166 (1 HSPs)
scaffold0166 (50-141)||(35886-35977)
[»] scaffold0040 (1 HSPs)
scaffold0040 (56-113)||(58639-58696)


Alignment Details
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 142 - 328
Target Start/End: Original strand, 8766899 - 8767077
Alignment:
Q  142 agactgaaactactattttagcacaccaaaaacttagttctggatccaccggtagctaggtattcaaaagtatatacgttatgaaatctaactattcaac 241  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||        ||||||||||||||||||||||||||||||||||||||    
T  8766899 agactgaaactactattttagcacaccaaaaacttagttttggatccaccggta--------ttcaaaagtatatacgttatgaaatctaactattcaac 8766990  T
Q  242 agtaaagatgagttgaattgtaactttttcaggttcttgaaaattcttttgttggccaccaccagcaagaaaccaagctgtttaagg 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8766991 agtaaagatgagttgaattgtaactttttcaggttcttgaaaattcttttgttggccaccaccagcaagaaaccaagctgtttaagg 8767077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 19756395 - 19756478
Alignment:
Q  28 tatctactattttattttttcggtcaggtagtttagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggtt 112  Q
    |||||| |||||| |||||| | ||||||||  |||||||||||||||||||||||||||||||||||||||  | |||||||||    
T  19756395 tatctaatattttttttttttg-tcaggtagcctagtggctagattcacacacattatgtgtggagaagtggggattccgaggtt 19756478  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 28300220 - 28300125
Alignment:
Q  37 ttttattttttcggtcaggtagtttagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaatcctgacccctgcaca 132  Q
    |||| |||||| ||||| ||||  | ||||||||||||||||||||||||| |||||||||||  |||||| ||||| || || | ||||||||||    
T  28300220 ttttttttttttggtcaagtagccttgtggctagattcacacacattatgtatggagaagtggggaatccggggttcgaaccccggcccctgcaca 28300125  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 141
Target Start/End: Complemental strand, 42445869 - 42445783
Alignment:
Q  55 gtagtttagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaatcctgacccctgcacataatatctc 141  Q
    ||||||||||||||||||||||||||||||||||| || ||||||| ||| |   |||| || ||||||| ||||||| | ||||||    
T  42445869 gtagtttagtggctagattcacacacattatgtgtagaaaagtggataattcagagttcgaaccctgaccgctgcacaaattatctc 42445783  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 1028837 - 1028780
Alignment:
Q  50 gtcaggtagtttagtggctagattcacacacattatgtgtggagaagtggaaaatccg 107  Q
    |||||||||| ||||||||||||||||||||||||||| || ||||||| | ||||||    
T  1028837 gtcaggtagtctagtggctagattcacacacattatgtatgaagaagtgaagaatccg 1028780  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 8766790 - 8766851
Alignment:
Q  31 ctactattttattttttcggtcaggtagtttagtggctagattcacacacattatgtgtgga 92  Q
    ||||||||||||||||| ||||| ||||  ||||||||||||||||| ||||||| ||||||    
T  8766790 ctactattttatttttttggtcatgtagcctagtggctagattcacatacattatttgtgga 8766851  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 13147732 - 13147780
Alignment:
Q  50 gtcaggtagtttagtggctagattcacacacattatgtgtggagaagtg 98  Q
    |||| ||||| |||||||||||||||||||||||||||||| |||||||    
T  13147732 gtcaagtagtctagtggctagattcacacacattatgtgtgaagaagtg 13147780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 139
Target Start/End: Complemental strand, 9429827 - 9429738
Alignment:
Q  50 gtcaggtagtttagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaatcctgacccctgcacataatatc 139  Q
    ||||| ||||||| |||  ||||||||||||||||| | |||| |||||||||||| |||||| |||||   |||||| || ||||||||    
T  9429827 gtcagatagtttattggtaagattcacacacattatatatggataagtggaaaatctgaggtttaaatcggaacccctacatataatatc 9429738  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 378
Target Start/End: Original strand, 8767095 - 8767127
Alignment:
Q  346 ttctctgatatatctctctctctggtcctatat 378  Q
    |||||||||||||||||||||||||||||||||    
T  8767095 ttctctgatatatctctctctctggtcctatat 8767127  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 8766783 - 8766745
Alignment:
Q  1 aaaaatatgttcaatcaacttaaaaagtatctactattt 39  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  8766783 aaaaatatgtttaatcaacttaaaaaatatctactattt 8766745  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 24182629 - 24182679
Alignment:
Q  55 gtagtttagtggctagattcacacacattatgtgtggagaagtggaaaatc 105  Q
    |||| |||||| ||||||||||| | ||||||||||||||||| |||||||    
T  24182629 gtagcttagtgactagattcacagatattatgtgtggagaagtagaaaatc 24182679  T

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Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 54240719 - 54240640
Alignment:
Q  55 gtagtttagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaatcctgacccctgcacata 134  Q
    ||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||| || || ||||||||||||||    
T  54240719 gtagtctagtggttagattcacacacattatgcgtggagaagtggaaaatccgaggttcgaaccccgacccctgcacata 54240640  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 61 - 141
Target Start/End: Original strand, 9737575 - 9737655
Alignment:
Q  61 tagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaatcctgacccctgcacataatatctc 141  Q
    |||||| || ||||||||||||||||||| ||||| | |||||| |||||||| || ||||||||||||||||||||||||    
T  9737575 tagtggttatattcacacacattatgtgtagagaaatagaaaattcgaggttcgaaccctgacccctgcacataatatctc 9737655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 38745281 - 38745363
Alignment:
Q  50 gtcaggtagtttagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaatcctgacccctgcaca 132  Q
    |||| ||||| ||||||||||||||||||||||| |||||||||||||||  ||| || ||||| ||||| ||||||||||||    
T  38745281 gtcaagtagtctagtggctagattcacacacattttgtgtggagaagtggggaattcggggttcgaatcccgacccctgcaca 38745363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 11988906 - 11988968
Alignment:
Q  35 tattttattttttcggtcaggtagtttagtggctagattcacacacattatgtgtggagaagtgg 99  Q
    ||||||||||||  |||||  |||| |||||||||||||||||||||||||||||||||||||||    
T  11988906 tattttattttt--ggtcaattagtctagtggctagattcacacacattatgtgtggagaagtgg 11988968  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 52910377 - 52910425
Alignment:
Q  51 tcaggtagtttagtggctagattcacacacattatgtgtggagaagtgg 99  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  52910377 tcaggtagtctagtgactagattcacacacattatgtgtggagaagtgg 52910425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 41259952 - 41259990
Alignment:
Q  61 tagtggctagattcacacacattatgtgtggagaagtgg 99  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41259952 tagtggctagattcacacacattatgtgtggagaagtgg 41259990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 51829544 - 51829593
Alignment:
Q  49 ggtcaggtagtttagtggctagattcacacacattatgtgtggagaagtg 98  Q
    ||||| ||||| ||||||||||||||||| ||||||||||||||||||||    
T  51829544 ggtcaagtagtatagtggctagattcacatacattatgtgtggagaagtg 51829593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 36786566 - 36786624
Alignment:
Q  56 tagtttagtggctagattcacacacattatgtgtggagaag-tggaaaatccgaggttc 113  Q
    ||||| |||||||||||||||||| |||||||||||||||| |||  ||||||||||||    
T  36786566 tagttcagtggctagattcacacatattatgtgtggagaagttggggaatccgaggttc 36786624  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 21177040 - 21177086
Alignment:
Q  67 ctagattcacacacattatgtgtggagaagtggaaaatccgaggttc 113  Q
    ||||||| |||||||||||||||||||||||||  ||| ||||||||    
T  21177040 ctagatttacacacattatgtgtggagaagtggggaattcgaggttc 21177086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 6757346 - 6757309
Alignment:
Q  61 tagtggctagattcacacacattatgtgtggagaagtg 98  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  6757346 tagtggctagatttacacacattatgtgtggaaaagtg 6757309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 12111035 - 12111092
Alignment:
Q  59 tttagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaa 116  Q
    |||||||||||||||||  ||||||||| |||||||| |||| |||| | ||||||||    
T  12111035 tttagtggctagattcattcacattatgcgtggagaaatggagaatctggggttcaaa 12111092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 99
Target Start/End: Complemental strand, 17002996 - 17002967
Alignment:
Q  70 gattcacacacattatgtgtggagaagtgg 99  Q
    ||||||||||||||||||||||||||||||    
T  17002996 gattcacacacattatgtgtggagaagtgg 17002967  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 33440090 - 33440042
Alignment:
Q  56 tagtttagtggctagattcacacacattatgtgtggagaagtggaaaat 104  Q
    |||| |||||| ||||||||||||||||||||||| | | |||||||||    
T  33440090 tagtctagtggttagattcacacacattatgtgtgaaaaggtggaaaat 33440042  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 42909162 - 42909202
Alignment:
Q  31 ctactattttattttttcggtcaggtagtttagtggctaga 71  Q
    |||| ||||||||||||  ||||||||||||||||||||||    
T  42909162 ctacaattttattttttttgtcaggtagtttagtggctaga 42909202  T

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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 14368410 - 14368467
Alignment:
Q  56 tagtttagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||    
T  14368410 tagtttagtggctagattcacacacattatgtgtggagaagtggggaatccgtggttc 14368467  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 20157035 - 20156979
Alignment:
Q  39 ttattttttcggtcaggtagtttagtggctagattcacacacattatgtgtggagaa 95  Q
    |||||||||  |||| ||||||||||| |||||||||||||||||||||||||||||    
T  20157035 ttatttttttcgtcaagtagtttagtgtctagattcacacacattatgtgtggagaa 20156979  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 37123671 - 37123628
Alignment:
Q  55 gtagtttagtggctagattcacacacattatgtgtggagaagtg 98  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  37123671 gtagtctagtggctagattcacacacattatgtgtggagaagtg 37123628  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 34319803 - 34319885
Alignment:
Q  50 gtcaggtagtttagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaatcctgacccctgcaca 132  Q
    |||| ||||| ||||||||||||||||||||||||||||| ||||||||   |||||  ||||  ||||||| ||||||||||    
T  34319803 gtcaagtagtctagtggctagattcacacacattatgtgtagagaagtgaggaatccagggttagaatcctggcccctgcaca 34319885  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 34028219 - 34028164
Alignment:
Q  39 ttattttttcggtcaggtagtttagtggctagattcacacacattatgtgtggagaa 95  Q
    ||||||||||| ||| |||||||| ||| ||||||||||||||||||||||||||||    
T  34028219 ttattttttcg-tcaagtagtttaatggttagattcacacacattatgtgtggagaa 34028164  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 44287897 - 44287829
Alignment:
Q  64 tggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaatcctgacccctgcaca 132  Q
    ||||||||||||||||||||||||||||||||||||  ||||||  |||| |||||  ||| |||||||    
T  44287897 tggctagattcacacacattatgtgtggagaagtggggaatccggagttcgaatcccaacctctgcaca 44287829  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 31068887 - 31068947
Alignment:
Q  56 tagtttagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaa 116  Q
    |||| |||||| ||||||||||||||||| ||||||||||||||  ||||||  |||||||    
T  31068887 tagtctagtggttagattcacacacattaagtgtggagaagtggggaatccggagttcaaa 31068947  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 8915673 - 8915635
Alignment:
Q  61 tagtggctagattcacacacattatgtgtggagaagtgg 99  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  8915673 tagtggctagattcacacacattatttatggagaagtgg 8915635  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 38690796 - 38690834
Alignment:
Q  61 tagtggctagattcacacacattatgtgtggagaagtgg 99  Q
    ||||||||||||||||| ||||||| |||||||||||||    
T  38690796 tagtggctagattcacatacattatatgtggagaagtgg 38690834  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 113
Target Start/End: Original strand, 9198943 - 9198980
Alignment:
Q  76 cacacattatgtgtggagaagtggaaaatccgaggttc 113  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  9198943 cacacattatgtgtggagaagtgggaaattcgaggttc 9198980  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 9932020 - 9932065
Alignment:
Q  68 tagattcacacacattatgtgtggagaagtggaaaatccgaggttc 113  Q
    |||||||||||||||||| |||||||||||||  |||||| |||||    
T  9932020 tagattcacacacattatatgtggagaagtggggaatccggggttc 9932065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 89
Target Start/End: Original strand, 32087341 - 32087370
Alignment:
Q  60 ttagtggctagattcacacacattatgtgt 89  Q
    ||||||||||||||||||||||||||||||    
T  32087341 ttagtggctagattcacacacattatgtgt 32087370  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 99
Target Start/End: Original strand, 9294131 - 9294159
Alignment:
Q  71 attcacacacattatgtgtggagaagtgg 99  Q
    |||||||||||||||||||||||||||||    
T  9294131 attcacacacattatgtgtggagaagtgg 9294159  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 141
Target Start/End: Original strand, 31351648 - 31351752
Alignment:
Q  37 ttttattttttcggtcaggtagtttagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaatcctgacccctgcacataat 136  Q
    |||| |||||| | ||| ||||| ||||||||||||||||||| ||||||||||||||| ||| |||||||  |||| || || |||||||||||| | |    
T  31351648 ttttttttttttgatcaagtagtctagtggctagattcacacatattatgtgtggagaaatgggaaatccggagttcgaaccccgacccctgcacaaatt 31351747  T
Q  137 atctc 141  Q
    |||||    
T  31351748 atctc 31351752  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 141
Target Start/End: Original strand, 35010382 - 35010462
Alignment:
Q  61 tagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaatcctgacccctgcacataatatctc 141  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||  |||| || || ||| |||||||| | ||||||    
T  35010382 tagtggctagattcatacacattatgtgtggagaagtgggaaatccggagttcgaaccccgactcctgcacaaattatctc 35010462  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 139
Target Start/End: Original strand, 25273044 - 25273145
Alignment:
Q  36 attttattttttcggtcaggtagtttagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaatcctgacccctgcacataa 135  Q
    |||||||||||| |||||| |||| |||||| ||||||| |||| ||||| | |||||||||||  ||||||| |||| || ||| ||||||||||||||    
T  25273044 attttatttttt-ggtcagatagtctagtggttagattcgcacatattatatatggagaagtggggaatccga-gttcgaaccctaacccctgcacataa 25273141  T
Q  136 tatc 139  Q
    ||||    
T  25273142 tatc 25273145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 99
Target Start/End: Original strand, 28091303 - 28091366
Alignment:
Q  36 attttattttttcggtcaggtagtttagtggctagattcacacacattatgtgtggagaagtgg 99  Q
    ||||||||||||  |||| ||||| || | ||||||||||||||||||||||||||||||||||    
T  28091303 attttattttttttgtcaagtagtctaattgctagattcacacacattatgtgtggagaagtgg 28091366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 9460282 - 9460236
Alignment:
Q  49 ggtcaggtagtttagtggctagattcacacacattatgtgtggagaa 95  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||    
T  9460282 ggtcaagtagtttagtggctatattcacacacattatgtgtggagaa 9460236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 13538243 - 13538297
Alignment:
Q  50 gtcaggtagtttagtggctagattcacacacattatgtgtggagaagtggaaaat 104  Q
    |||| ||||| ||||||||||||||||||||||||||| ||||||||||| ||||    
T  13538243 gtcaagtagtctagtggctagattcacacacattatgtatggagaagtgggaaat 13538297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 141
Target Start/End: Original strand, 35130612 - 35130690
Alignment:
Q  63 gtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaatcctgacccctgcacataatatctc 141  Q
    |||||||||||||||||||| ||||||| |||||||| ||||||| ||||| || || | |||||||||| | ||||||    
T  35130612 gtggctagattcacacacataatgtgtgaagaagtgggaaatccggggttcgaaccccggcccctgcacaaattatctc 35130690  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 54733272 - 54733309
Alignment:
Q  57 agtttagtggctagattcacacacattatgtgtggaga 94  Q
    ||||||||||||||||||||||||||||||||||||||    
T  54733272 agtttagtggctagattcacacacattatgtgtggaga 54733309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 3746390 - 3746465
Alignment:
Q  65 ggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaatcctgacccctgcacataatatctc 141  Q
    ||||||||| ||||||||||| ||||||||| ||| ||||||| ||||| || ||| |||||| |||||||||||||    
T  3746390 ggctagatttacacacattatatgtggagaaatgggaaatccggggttcgaa-cctcacccctacacataatatctc 3746465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 38415494 - 38415565
Alignment:
Q  61 tagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaatcctgacccctgcaca 132  Q
    ||||||||||||||||||||||||||| || |||| |||| |||  | ||||| |||||||||| |||||||    
T  38415494 tagtggctagattcacacacattatgtatgaagaaatggagaatttggggttcgaatcctgacctctgcaca 38415565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 49479576 - 49479529
Alignment:
Q  50 gtcaggtagtttagtggctagattcacacacattatgtgtggagaagt 97  Q
    |||| ||||| |||||| ||||||||||||||||||||||||||||||    
T  49479576 gtcaagtagtctagtggttagattcacacacattatgtgtggagaagt 49479529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 99
Target Start/End: Original strand, 50263964 - 50264027
Alignment:
Q  36 attttattttttcggtcaggtagtttagtggctagattcacacacattatgtgtggagaagtgg 99  Q
    ||||| ||||||  |||| ||||  |||||||||||||||||||||| ||||||||||||||||    
T  50263964 atttttttttttttgtcaagtagcctagtggctagattcacacacatcatgtgtggagaagtgg 50264027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 17882233 - 17882313
Alignment:
Q  50 gtcaggtagtttagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaatcctgacccctgcaca 132  Q
    |||| ||||| ||||||||||||| ||||||||||||| ||||||||| || |||||| ||||| || |||| ||||||||||    
T  17882233 gtcaagtagtctagtggctagatttacacacattatgt-tggagaagtagagaatccggggttcgaaccctg-cccctgcaca 17882313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 42721498 - 42721543
Alignment:
Q  61 tagtggctagattcacacacat--tatgtgtggagaagtggaaaat 104  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||    
T  42721498 tagtggctagattcacacacattatatgtgtggagaagtggaaaat 42721543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 42657617 - 42657572
Alignment:
Q  55 gtagtttagtggctagattcacacacattatgtgtggagaagtgga 100  Q
    |||||||||||| || |||||||||||||||||||| |||||||||    
T  42657617 gtagtttagtggttaaattcacacacattatgtgtgaagaagtgga 42657572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 1939999 - 1940039
Alignment:
Q  66 gctagattcacacacattatgtgtggagaagtggaaaatcc 106  Q
    ||||||||||||||| |||||| ||||||||||||||||||    
T  1939999 gctagattcacacactttatgtatggagaagtggaaaatcc 1940039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 7921704 - 7921656
Alignment:
Q  50 gtcaggtagtttagtggctagattcacacacattatgtgtggagaagtg 98  Q
    |||| ||||| ||||||||| |||||||||||| |||||||||||||||    
T  7921704 gtcaagtagtctagtggctaaattcacacacatgatgtgtggagaagtg 7921656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 40981785 - 40981840
Alignment:
Q  61 tagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaa 116  Q
    |||||| |||||| || ||||||||||||||||||||||| |||| ||| ||||||    
T  40981785 tagtggttagatttacgcacattatgtgtggagaagtggagaatctgagattcaaa 40981840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 45333451 - 45333491
Alignment:
Q  61 tagtggctagattcacacacat--tatgtgtggagaagtgg 99  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  45333451 tagtggctagattcacacacattatatgtgtggagaagtgg 45333491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 45341141 - 45341181
Alignment:
Q  61 tagtggctagattcacacacat--tatgtgtggagaagtgg 99  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  45341141 tagtggctagattcacacacattatatgtgtggagaagtgg 45341181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 38438367 - 38438407
Alignment:
Q  64 tggctagattcacacacattatgtgtggagaagtggaaaat 104  Q
    |||||||||||| ||||||||||| ||||||||||| ||||    
T  38438367 tggctagattcatacacattatgtttggagaagtgggaaat 38438407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 47684475 - 47684557
Alignment:
Q  50 gtcaggtagtttagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaatcctgacccctgcaca 132  Q
    |||| ||||| || |||||||||||||||||||||||| ||||||||| | ||||||| |||||||| ||  |||||||||||    
T  47684475 gtcaagtagtctattggctagattcacacacattatgtatggagaagtaggaaatccggggttcaaaccccaacccctgcaca 47684557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 7683493 - 7683451
Alignment:
Q  55 gtagtttagtggctagattcacacacattatgtgtggagaagt 97  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  7683493 gtagtttagtggttagattcacacacattatgtgtggagaagt 7683451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 25091289 - 25091232
Alignment:
Q  41 attttttcggtcaggtagtttagtggctagattcacacacattatgtgtggagaagtg 98  Q
    |||||||  |||| ||||| |||||||||||||||||||||||||||||| |||||||    
T  25091289 attttttttgtcaagtagtctagtggctagattcacacacattatgtgtgaagaagtg 25091232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 27227252 - 27227301
Alignment:
Q  50 gtcaggtagtttagtggctagattcacacacattatgtgtggagaagtgg 99  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||||||    
T  27227252 gtcaagtagtctagtggctagattcaaacacattatgtgtggagaagtgg 27227301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 27744692 - 27744635
Alignment:
Q  56 tagtttagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttc 113  Q
    ||||||||||| || |||||||||||||||||||||||||||||  ||||||| ||||    
T  27744692 tagtttagtggttaaattcacacacattatgtgtggagaagtggggaatccgatgttc 27744635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 32958604 - 32958527
Alignment:
Q  55 gtagtttagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaatcctgacccctgcaca 132  Q
    ||||| || ||||||||||||||||||||| ||||||| ||||||| |||||| ||||| ||  ||||| ||||||||    
T  32958604 gtagtgtaatggctagattcacacacattaagtgtggataagtggagaatccggggttcgaactctgactcctgcaca 32958527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 13054699 - 13054631
Alignment:
Q  66 gctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaatcctgacccctgcacata 134  Q
    ||||||||| |||||||||||||||||||||||| ||||| | ||||| || || | ||||||||||||    
T  13054699 gctagattcgcacacattatgtgtggagaagtgggaaatctggggttcgaaccccggcccctgcacata 13054631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 141
Target Start/End: Complemental strand, 37307768 - 37307688
Alignment:
Q  61 tagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaatcctgacccctgcacataatatctc 141  Q
    ||||||||||||||| ||||||||| |||||||||||||  ||||||  |||| || || ||||||  |||||||||||||    
T  37307768 tagtggctagattcaaacacattatttgtggagaagtggggaatccggagttcgaaccccgaccccgacacataatatctc 37307688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 40097893 - 40097949
Alignment:
Q  39 ttattttttcggtcaggtagtttagtggctagattcacacacattatgtgtggagaa 95  Q
    |||||||||  |||| ||||||||||| ||| |||||||||||||||||||||||||    
T  40097893 ttatttttttcgtcaagtagtttagtgtctaaattcacacacattatgtgtggagaa 40097949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 33 - 141
Target Start/End: Original strand, 45725094 - 45725202
Alignment:
Q  33 actattttattttttcggtcaggtagtttagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaatcctgacccctgcaca 132  Q
    |||||||| ||||||  |||| ||||  ||||||||||||| ||| ||||||||||| ||||||||   ||| |||| ||| ||||| ||||||||||||    
T  45725094 actatttttttttttttgtcaagtagcctagtggctagatttacatacattatgtgtagagaagtgagtaattcgagattcgaatcccgacccctgcaca 45725193  T
Q  133 taatatctc 141  Q
     | ||||||    
T  45725194 aattatctc 45725202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 9667219 - 9667273
Alignment:
Q  50 gtcaggtagtttagtggctagattcacacacattatgtgtggagaagtggaaaat 104  Q
    |||| ||||| |||||||| |||||||||||||||||| ||||||||||| ||||    
T  9667219 gtcaagtagtctagtggctggattcacacacattatgtatggagaagtgggaaat 9667273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 23198524 - 23198562
Alignment:
Q  61 tagtggctagattcacacacattatgtgtggagaagtgg 99  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  23198524 tagtggctagatttacacacattatgtgtggagaagtgg 23198562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 24250145 - 24250190
Alignment:
Q  61 tagtggctagattcacacacattatgtgtggagaagtggaaaatcc 106  Q
    ||||| |||||||||||||||||||||||||| ||||||| |||||    
T  24250145 tagtgactagattcacacacattatgtgtggaaaagtggagaatcc 24250190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 44165875 - 44165923
Alignment:
Q  50 gtcaggtagtttagtggctagattcacacacattatgtgtggagaagtgg 99  Q
    |||| |||| |||||||| |||||||||||||||||||||||||||||||    
T  44165875 gtcaagtaggttagtggc-agattcacacacattatgtgtggagaagtgg 44165923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 23982149 - 23982078
Alignment:
Q  36 attttattttttcggtcaggtagtttagtggctagattcacacacattatgtgtggagaagtggaaaatccg 107  Q
    ||||| ||||||  |||| ||| | ||||||||||||||||||||||||||||  ||||| |||| ||||||    
T  23982149 atttttttttttttgtcaagtaatctagtggctagattcacacacattatgtgcagagaaatggagaatccg 23982078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 29551212 - 29551166
Alignment:
Q  56 tagtttagtggctagattcacacacattatgtgtggagaagtggaaa 102  Q
    |||| |||| ||||||||| |||||||||||| ||||||||||||||    
T  29551212 tagtctagtagctagattcgcacacattatgtatggagaagtggaaa 29551166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 45967360 - 45967438
Alignment:
Q  61 tagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaatcctgacccctgcacataatatc 139  Q
    |||||||||||||||||||||||||||||| | |||||   ||| || ||||| || || ||||| || ||||||||||    
T  45967360 tagtggctagattcacacacattatgtgtgaaaaagtgaggaattcggggttcgaaccccgacccatgtacataatatc 45967438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 30745962 - 30745999
Alignment:
Q  61 tagtggctagattcacacacattatgtgtggagaagtg 98  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  30745962 tagtggctagactcacgcacattatgtgtggagaagtg 30745999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 41780568 - 41780531
Alignment:
Q  61 tagtggctagattcacacacattatgtgtggagaagtg 98  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  41780568 tagtggttagattcacacacattatgtgtgtagaagtg 41780531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 39584252 - 39584288
Alignment:
Q  60 ttagtggctagattcacacacattatgtgtggagaag 96  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  39584252 ttagtggctagactcacacatattatgtgtggagaag 39584288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 12654474 - 12654540
Alignment:
Q  39 ttattttttcggtcaggtagtttagtggctagattcacacacattatgtgtggagaagtggaaaatc 105  Q
    |||||||||  |||| |||||||| ||||||||||||||||||||||||||| | ||||||||||||    
T  12654474 ttattttttttgtcaagtagtttattggctagattcacacacattatgtgtgaaaaagtggaaaatc 12654540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 8177020 - 8176965
Alignment:
Q  61 tagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaa 116  Q
    ||||||||| ||||| |||||||||||||||||||||||| ||| |||||||||||    
T  8177020 tagtggctaaattcatacacattatgtgtggagaagtggagaattcgaggttcaaa 8176965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 139
Target Start/End: Original strand, 20599370 - 20599469
Alignment:
Q  35 tattttattttttcggtcaggtagtttagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaatcctgacccctgcacata 134  Q
    ||||||||||||  |||||| |||| |||||| |||| ||||||   ||||||||||||||||||  |||||| |||||||| || ||||| ||||||||    
T  20599370 tattttattttt--ggtcagatagtctagtggttagactcacac---ttatgtgtggagaagtggggaatccggggttcaaaccccgacccttgcacata 20599464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 21023680 - 21023742
Alignment:
Q  56 tagtttagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaatc 118  Q
    |||| ||||| | |||||||||||||||||||||||||||||||| |||||| ||||| ||||    
T  21023680 tagtctagtgacaagattcacacacattatgtgtggagaagtggagaatccggggttcgaatc 21023742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 130
Target Start/End: Complemental strand, 7339604 - 7339536
Alignment:
Q  61 tagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaatcctgacccctgca 130  Q
    |||||||||||||||||||||||||||||| ||||||| | |||  | ||||||||| ||||||||||||    
T  7339604 tagtggctagattcacacacattatgtgtgaagaagtgaagaat-tggggttcaaattctgacccctgca 7339536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 7326324 - 7326368
Alignment:
Q  55 gtagtttagtggctagattcacacacattatgtgtggagaagtgg 99  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||    
T  7326324 gtagtctagtggctaaattcacacacattatgtgtggagaagtgg 7326368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 5925690 - 5925652
Alignment:
Q  61 tagtggctagattcacacacattatgtgtggagaagtgg 99  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  5925690 tagtggctagattcacacacattatgtgtgaagaagtgg 5925652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 6922633 - 6922671
Alignment:
Q  61 tagtggctagattcacacacattatgtgtggagaagtgg 99  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  6922633 tagtggctagattcacacacattatatgtggagaagtgg 6922671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 12606763 - 12606721
Alignment:
Q  57 agtttagtggctagattcacacacattatgtgtggagaagtgg 99  Q
    ||||||||||||||||||||||||||||| |||| ||||||||    
T  12606763 agtttagtggctagattcacacacattatatgtgaagaagtgg 12606721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 24896867 - 24896906
Alignment:
Q  60 ttagtggctagattcacacacattatgtgtggagaagtgg 99  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  24896867 ttagtggctaaattcacacacattatgtgtggtgaagtgg 24896906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 30327788 - 30327726
Alignment:
Q  37 ttttattttttcggtcaggtagtttagtggctagattcacacacattatgtgtggagaagtgg 99  Q
    |||| |||||| | ||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  30327788 ttttttttttttgatcaagtagtttagtggctagattcacacatattatgtgtggagaagtgg 30327726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 63 - 132
Target Start/End: Complemental strand, 20706612 - 20706543
Alignment:
Q  63 gtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaatcctgacccctgcaca 132  Q
    |||| ||||||||||||||||| ||||||||||||||||||||  ||||||||| | ||||| |||||||    
T  20706612 gtggttagattcacacacattacgtgtggagaagtggaaaatctaaggttcaaaccttgacctctgcaca 20706543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 139
Target Start/End: Complemental strand, 32398336 - 32398247
Alignment:
Q  50 gtcaggtagtttagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaatcctgacccctgcacataatatc 139  Q
    |||||||||| ||| | ||||||||||| |||||||||||||||||||||  ||| ||  |||| || || ||| |||||||||||||||    
T  32398336 gtcaggtagtatagcgactagattcacatacattatgtgtggagaagtggggaatacgttgttcgaaccccgactcctgcacataatatc 32398247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 43405998 - 43406055
Alignment:
Q  56 tagtttagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttc 113  Q
    |||| |||||| |||| |||||||||||||||||||||||||||| |||| |||||||    
T  43405998 tagtctagtggttagactcacacacattatgtgtggagaagtggagaatctgaggttc 43406055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 5002005 - 5002052
Alignment:
Q  51 tcaggtagtttagtggctagattcacacacattatgtgtggagaagtg 98  Q
    ||||||||||||||||||| ||||||||||||| ||| ||||||||||    
T  5002005 tcaggtagtttagtggctaaattcacacacattgtgtatggagaagtg 5002052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 8032968 - 8032897
Alignment:
Q  61 tagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaatcctgacccctgcaca 132  Q
    ||||||||| |||||||||||||||||||||||| ||||| |||  | ||||| |||||  |||||||||||    
T  8032968 tagtggctaaattcacacacattatgtgtggagatgtggagaatttggggttcgaatcccaacccctgcaca 8032897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 141
Target Start/End: Complemental strand, 24793594 - 24793503
Alignment:
Q  50 gtcaggtagtttagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaatcctgacccctgcacataatatctc 141  Q
    |||| ||||| ||||||||||||||||| ||||||||||| ||||| ||| ||||| | |||||  | || |||||||||||| | ||||||    
T  24793594 gtcaagtagtctagtggctagattcacatacattatgtgtagagaaatgggaaatctggggttcggaccccgacccctgcacaaattatctc 24793503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 31478693 - 31478739
Alignment:
Q  67 ctagattcacacacattatgtgtggagaagtggaaaatccgaggttc 113  Q
    ||||||||||||||||||||||| |||||||||| ||||||| ||||    
T  31478693 ctagattcacacacattatgtgtagagaagtggagaatccgaagttc 31478739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 28282455 - 28282407
Alignment:
Q  50 gtcaggtagtttagtggctagattcacacacattatgtgtggagaagtg 98  Q
    |||| ||||| |||||| |||||||||||| ||||||||||||||||||    
T  28282455 gtcaagtagtctagtggttagattcacacatattatgtgtggagaagtg 28282407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 15409285 - 15409223
Alignment:
Q  37 ttttattttttcggtcaggtagtttagtggctagattcacacacattatgtgtggagaagtgg 99  Q
    |||| ||||||  |||| ||||| ||||||||| |||||||||||||||||||  ||||||||    
T  15409285 tttttttttttttgtcaagtagtctagtggctaaattcacacacattatgtgtaaagaagtgg 15409223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 39969019 - 39968978
Alignment:
Q  65 ggctagattcacacacattatgtgtggagaagtggaaaatcc 106  Q
    ||||| |||| |||||||||||||||||||||||| ||||||    
T  39969019 ggctaaattcgcacacattatgtgtggagaagtgggaaatcc 39968978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 10524929 - 10524881
Alignment:
Q  56 tagtttagtggctagattcacacacattatgtgtggagaagtggaaaat 104  Q
    |||||||| || |||||||||||| |||||||||| |||| ||||||||    
T  10524929 tagtttagcggttagattcacacatattatgtgtgaagaattggaaaat 10524881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 22599905 - 22599941
Alignment:
Q  35 tattttattttttcggtcaggtagtttagtggctaga 71  Q
    ||||||||||||| | |||||||||||||||||||||    
T  22599905 tattttatttttttgatcaggtagtttagtggctaga 22599941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 2098854 - 2098802
Alignment:
Q  61 tagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttc 113  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||| |||||    
T  2098854 tagtggctagattcacacacattatatgtggagaagtggagaatccggggttc 2098802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 1927668 - 1927612
Alignment:
Q  39 ttattttttcggtcaggtagtttagtggctagattcacacacattatgtgtggagaa 95  Q
    |||||||||  |||| ||||||| ||| |||||||||||||||||||||||||||||    
T  1927668 ttatttttttcgtcaagtagtttggtgactagattcacacacattatgtgtggagaa 1927612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 141
Target Start/End: Original strand, 8757273 - 8757353
Alignment:
Q  61 tagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaatcctgacccctgcacataatatctc 141  Q
    |||||| ||||||||||||||||||||||||||| ||||  |||||  ||||| || || | |||||||||||||| ||||    
T  8757273 tagtggttagattcacacacattatgtgtggagacgtggggaatccagggttcgaaccccggcccctgcacataatgtctc 8757353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 2661631 - 2661669
Alignment:
Q  60 ttagtggctagattcacacacattatgtgtggagaagtg 98  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  2661631 ttagtggctagattcacacatattatgtgtggagaagtg 2661669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 35997088 - 35997048
Alignment:
Q  60 ttagtggctagattcacacacattatgtgtggagaagtgga 100  Q
    |||||||||||| |||||||||||||||||| |||||||||    
T  35997088 ttagtggctagagtcacacacattatgtgtgaagaagtgga 35997048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 13350888 - 13350821
Alignment:
Q  37 ttttattttttcggtcaggtagtttagtggctagattcacacacattatgtgtggagaagtggaaaat 104  Q
    |||| |||||| ||||| || | |||||| ||| ||||||| | ||||||||||||||||||||||||    
T  13350888 ttttttttttttggtcaagttgcttagtgactatattcacaaatattatgtgtggagaagtggaaaat 13350821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 19175123 - 19175196
Alignment:
Q  68 tagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaatcctgacccctgcacataatatctc 141  Q
    |||||||||||| || || | ||||||| ||| ||||   | |||||||||| |||||||||||||||||||||    
T  19175123 tagattcacacatataatatatggagaaatgggaaattttaagttcaaatcccgacccctgcacataatatctc 19175196  T

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Target: scaffold0178 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 9703 - 9753
Alignment:
Q  62 agtggctagattcacacacattatgtgtggagaagtggaaaatccgaggtt 112  Q
    ||||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  9703 agtggctagattcacacacattatgtgtggagaagtggggaatccggggtt 9753  T

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Target: scaffold0166 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 141
Target Start/End: Complemental strand, 35977 - 35886
Alignment:
Q  50 gtcaggtagtttagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttcaaatcctgacccctgcacataatatctc 141  Q
    |||| ||||| ||||||||||||||||| ||||||||||| ||||| ||| ||||| | |||||  | || |||||||||||| | ||||||    
T  35977 gtcaagtagtctagtggctagattcacatacattatgtgtagagaaatgggaaatctggggttcggaccccgacccctgcacaaattatctc 35886  T

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Target: scaffold0040 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 58639 - 58696
Alignment:
Q  56 tagtttagtggctagattcacacacattatgtgtggagaagtggaaaatccgaggttc 113  Q
    |||| ||||||||||| ||||||| || |||||||||||||||| ||||||| |||||    
T  58639 tagtctagtggctagaatcacacatataatgtgtggagaagtgggaaatccggggttc 58696  T

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