View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12100_high_4 (Length: 230)
Name: NF12100_high_4
Description: NF12100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12100_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 68 - 220
Target Start/End: Original strand, 45341921 - 45342073
Alignment:
| Q |
68 |
gagtgaacagtgaagagagcgcaattgcaagcgttgaggaaggactttgaagtccttcaaatgaaagaaggagaaaaagtggacgagtactttgctcgga |
167 |
Q |
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| T |
45341921 |
gagtgaacagtgaagagagcgcaattgcaagcgttgaggaaggagtttgaagtccttcaaatgaaagaaggagaaaaagtggacgagtactttgctcgga |
45342020 |
T |
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| Q |
168 |
cgcttacaattgtaaagaaaatgaagatttatggtgagaacatgacacaggtt |
220 |
Q |
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| T |
45342021 |
cgcttacaattgtaaagaaaatgaagatttatggtgagaacatgacccaggtt |
45342073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 45341594 - 45341645
Alignment:
| Q |
18 |
aaatgtcatctgaaagtagcaactttgtgcaaccagcaatccctaagtttga |
69 |
Q |
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| T |
45341594 |
aaatgtcatctgaaagtagcaactttgtgcaaccagcaatccctaagtttga |
45341645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 195
Target Start/End: Complemental strand, 20451555 - 20451488
Alignment:
| Q |
128 |
atgaaagaaggagaaaaagtggacgagtactttgctcggacgcttacaattgtaaagaaaatgaagat |
195 |
Q |
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| T |
20451555 |
atgaaggaaggagaaggagtggatgagtactttgctcgtactctaacaattgcaaacaaaatgaagat |
20451488 |
T |
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