View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12100_high_5 (Length: 226)
Name: NF12100_high_5
Description: NF12100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12100_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 43077087 - 43076873
Alignment:
| Q |
1 |
agtgcaaccaccacaaaggaaagaaacacaaacgctttagaaaaatcttctggggaatcataatcttcctcttcattgtcctagtaacaatcctaatcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43077087 |
agtgcaaccaccacaaaggaaagaaacacaaacgcttcagaaaaatcttctggggaatcataatcttcctcttcattgtcctagtaacaatcctaatcat |
43076988 |
T |
|
| Q |
101 |
ttgggctgtcttaaaaccttctaaaccttctttcattctccaagatgtcactgtttacgctttcaatgccacagttccaaatttcttaacctcaaatttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43076987 |
ttgggctgtcttaaaaccttctaaaccttctttcattctccaagatgtcactgtttacgctttcaacgccacagttccaaatttcttaacctcaaatttc |
43076888 |
T |
|
| Q |
201 |
caagtcacaggttct |
215 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
43076887 |
caagtcacagtttct |
43076873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 43091275 - 43091062
Alignment:
| Q |
1 |
agtgcaaccaccacaaaggaaagaaacacaaacgctttagaaaaatcttctggggaatcataatcttcctcttcattgtcctagtaacaatcctaatcat |
100 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||| ||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43091275 |
agtgcaatcaccacaaaggaaacaaacacaaacgcttcagaaaaatcttctagg-aatcataatcttcctcttcatcgtcctagtaacaatcctaatcat |
43091177 |
T |
|
| Q |
101 |
ttgggctgtcttaaaaccttctaaaccttctttcattctccaagatgtcactgtttacgctttcaatgccacagttccaaatttcttaacctcaaatttc |
200 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
43091176 |
ttgggatgtcttaaaaccttctaaaccgtctttcattctccaagatgtcactgtttacgctttcaacgccacagttcaaaatttcttaacctcaaatttc |
43091077 |
T |
|
| Q |
201 |
caagtcacaggttct |
215 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
43091076 |
caagtcacagtttct |
43091062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 43092190 - 43092104
Alignment:
| Q |
1 |
agtgcaaccaccacaaaggaaagaaacacaaacgctttagaaaaatcttctggggaatcataatcttcctcttcattgtcctagtaa |
87 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||| |||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
43092190 |
agtgcaaccaccacaaaggaaagaaacacaaacgcttcataaaactcttctggcgaatcataatcttcctcttcatcgtcctagtaa |
43092104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University