View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12100_low_1 (Length: 606)
Name: NF12100_low_1
Description: NF12100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12100_low_1 |
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| [»] scaffold2107 (1 HSPs) |
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| [»] scaffold0129 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 25 - 568
Target Start/End: Original strand, 13473341 - 13473882
Alignment:
| Q |
25 |
atcatctctaacatgatcataaccaaatgcatgaagactaaatgcattagtgacattagatagacactcattaaggctagggtaaacgaccttaatttcc |
124 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
13473341 |
atcatctctaacatgatcataaccaaatgcatgaagactaaatgcattagtgacattagatagacactcgttaaggctaggagaaacgaccttaatttcc |
13473440 |
T |
|
| Q |
125 |
ttagtagccgggttccataatactacatttctatgatcgagacaattatagaaacaaataatgccattaatagcagaacctaaaatatgaggaagaaaat |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
13473441 |
ttagtagccgggttccataatactacatttctatgatcgagacaattatagaaacaaataatgccattaatagcagaacctaaaatatgaagaagaaaat |
13473540 |
T |
|
| Q |
225 |
tatcacttggtagatgatcatatggcggtggtggatctaatctaaccttattctcaaacctctcacctgaaagcatatacaacatactcggaaccaaaaa |
324 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
13473541 |
tgtcacttggtagatgatcatatggcggtggtggatctaatctaaccttattctcaaacctctcacctgaaagcatatacaacatactcgaaaccaaaaa |
13473640 |
T |
|
| Q |
325 |
catattgaagatgagacacacatcatcatcgtcgtcgtcatcatacaatgaatgggatttggaaaccaaattgttgcggaacatggttaggaaagtagga |
424 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13473641 |
catattgaagatgagacacacatcatcgtcgtcgtcgtcatcatacaatgaatgggatttggaaaccaaattgttgcggaacatggttaggaaagtagga |
13473740 |
T |
|
| Q |
425 |
ttgccaaacaaaagtgaccatggtttgcgaacgcatgtaaaccgcttaacagatttgacaggaagtttagaaagaatacagagtgcaatatcatcgggtg |
524 |
Q |
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| T |
13473741 |
ttgccaaacaaaagtgaccatggtttacgaacgcatgtaaaccgcttaacagatttgacaggaagtttagagagaatac--agtacaatatcatcgggta |
13473838 |
T |
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| Q |
525 |
tatagctactactcaccttctcaaatgttggagccatagaagga |
568 |
Q |
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| T |
13473839 |
tatagctactactcaccttctcaaatgttggagccatagaagga |
13473882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 563 - 599
Target Start/End: Original strand, 13473889 - 13473925
Alignment:
| Q |
563 |
gaaggagtacaactaaatcatgtaagcacaggttctg |
599 |
Q |
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||||||||||||||||||||||||| |||| |||||| |
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| T |
13473889 |
gaaggagtacaactaaatcatgtaaccacacgttctg |
13473925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 429 - 545
Target Start/End: Complemental strand, 9763572 - 9763456
Alignment:
| Q |
429 |
caaacaaaagtgaccatggtttgcgaacgcatgtaaaccgcttaacagatttgacaggaagtttagaaagaatacagagtgcaatatcatcgggtgtata |
528 |
Q |
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|||||||||| ||||||| ||||||||| || | ||| ||||||||||||| |||||||||||||| |||||||||| ||||| ||||| ||| |||| |
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| T |
9763572 |
caaacaaaagagaccatgatttgcgaacacaagaaaaatgcttaacagatttaacaggaagtttagagagaatacagaaagcaatgtcatctggtatata |
9763473 |
T |
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| Q |
529 |
gctactactcaccttct |
545 |
Q |
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||||||||| ||||||| |
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| T |
9763472 |
gctactactaaccttct |
9763456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 557
Target Start/End: Complemental strand, 13280430 - 13280227
Alignment:
| Q |
354 |
cgtcgtcgtcatcatacaatgaatgggatttggaaaccaaattgttgcggaacatggttaggaaagtaggattgccaaacaaaagtgaccatggtttgcg |
453 |
Q |
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||||||| ||||||||| || || ||||||||||| | |||||||||||||||| | | |||| |||| || |||| ||| | ||||||| |||||| |
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| T |
13280430 |
cgtcgtcatcatcataccctgtttgagatttggaaacaagattgttgcggaacatgttcatgaaaatagggttttcaaataaatgagaccatgatttgcg |
13280331 |
T |
|
| Q |
454 |
aacgcatgtaaaccgcttaacagatttgacaggaagtttagaaagaatacagagtgcaatatcatcgggtgtatagctactactcaccttctcaaatgtt |
553 |
Q |
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||| || | ||| || |||| | ||| | ||| |||||||| |||||| ||| |||||||||||||| |||| ||| ||| ||||||||||| ||| |
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| T |
13280330 |
aacacaagcaaagcgtttaagatgtttaatagggagtttagagagaatagagaaaacaatatcatcgggtatataagtaccactaaccttctcaaacgtt |
13280231 |
T |
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| Q |
554 |
ggag |
557 |
Q |
| |
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|||| |
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| T |
13280230 |
ggag |
13280227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 27735999 - 27736033
Alignment:
| Q |
25 |
atcatctctaacatgatcataaccaaatgcatgaa |
59 |
Q |
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| T |
27735999 |
atcatctctaacatgatcataaccaaatccatgaa |
27736033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 534 - 570
Target Start/End: Original strand, 40399838 - 40399874
Alignment:
| Q |
534 |
tactcaccttctcaaatgttggagccatagaaggagt |
570 |
Q |
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|||||||||||||||||||||||||||| |||||||| |
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| T |
40399838 |
tactcaccttctcaaatgttggagccatggaaggagt |
40399874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2107 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold2107
Description:
Target: scaffold2107; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 519
Target Start/End: Original strand, 55 - 140
Alignment:
| Q |
434 |
aaaagtgaccatggtttgcgaacgcatgtaaaccgcttaacagatttgacaggaagtttagaaagaatacagagtgcaatatcatc |
519 |
Q |
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||||| ||||||| ||| |||||||| ||||| ||||| | ||| |||| ||| |||||||| ||||||| | |||||||||||| |
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| T |
55 |
aaaagagaccatgatttacgaacgcaagtaaatcgcttgagagacttgatagggagtttagagagaataccaaatgcaatatcatc |
140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 309
Target Start/End: Complemental strand, 9801 - 9764
Alignment:
| Q |
272 |
ttattctcaaacctctcacctgaaagcatatacaacat |
309 |
Q |
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| T |
9801 |
ttattctcaaacctctcaccagaaagcaaatacaacat |
9764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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