View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12100_low_2 (Length: 461)
Name: NF12100_low_2
Description: NF12100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12100_low_2 |
 | |
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| [»] scaffold0190 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 15195751 - 15196197
Alignment:
| Q |
1 |
caccaaaaattatgttccgttctgatgaagaactactcatcccaactgagagaatattccattttacaaaggagaacaccgcgagactcaaattaaaagc |
100 |
Q |
| |
|
||||| |||||| | |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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|
| T |
15195751 |
caccacaaattaagatccgttttgatgaagaacaactcatcccaactgagagaatattccattttacaaaggagaatatcgcgagactcaaattaaaagc |
15195850 |
T |
|
| Q |
101 |
caatatagaagctggcaccaacaaaatatcttccatgcaagcgctttgcacccacctttggcgctcagtgatccgttccaaacaacttaacccgcatgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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|
| T |
15195851 |
taatatagaagctggcaccaacaaaatatcttccatgcaagcgctttgcacccacctttggcgctcagtgatccgttccaaacaactggactcgcatgaa |
15195950 |
T |
|
| Q |
201 |
gaagtgaattttgtgttatgtataagtgttagatcaaggttggttccaccactatcatatgattattttggaaatgctatgatagtttgtggggttacaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15195951 |
gaagtgaattttgtgttatgtataagtgttagatcaaggttggttccaccactatcatatgattattttggaaatgctatgatagtttgtggggttacaa |
15196050 |
T |
|
| Q |
301 |
tgaaagtcagggagctattagaagaaggcgggcttggtaaaggtgctttagagatgtacaagattattgctttgcactctgatgagaagttaaagagtca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15196051 |
tgaaagtcagggagctattagaagaaggcgggcttggtaaaggttctttagagatgtacaagattattgctttgcactctgatgagaagttaaagagtca |
15196150 |
T |
|
| Q |
401 |
atatgaatcttggtcaagaacgccaaactttgttaaggctgatagtg |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15196151 |
atatgaatcttggtcaagaacgccaaactttgttaaggctgatagtg |
15196197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 232 - 399
Target Start/End: Complemental strand, 30141943 - 30141784
Alignment:
| Q |
232 |
gatcaaggttggttccaccactatcatatgattattttggaaatgctatgatagtttgtggggttacaatgaaagtcagggagctattagaagaaggcgg |
331 |
Q |
| |
|
|||||||||||||| |||||| | ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| || |
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|
| T |
30141943 |
gatcaaggttggtttcaccaccaccatatgattattttggaaatgctatgatac--------------atgaaagtcaaggagctattagaagaaggtgg |
30141858 |
T |
|
| Q |
332 |
gcttggtaaaggtgctttagagatgta------caagattattgctttgcactctgatgagaagttaaagagtc |
399 |
Q |
| |
|
|||||||||||||| |||||||||| | || || ||||||||||||||||||||||||||||||||||| |
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|
| T |
30141857 |
gcttggtaaaggtgttttagagatgcaatgaatcaggagtattgctttgcactctgatgagaagttaaagagtc |
30141784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 333 - 387
Target Start/End: Original strand, 15744879 - 15744933
Alignment:
| Q |
333 |
cttggtaaaggtgctttagagatgtacaagattattgctttgcactctgatgaga |
387 |
Q |
| |
|
||||||||||||||||| |||||| ||||||| ||||||||||| |||||||||| |
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|
| T |
15744879 |
cttggtaaaggtgctttggagatgaacaagatgattgctttgcaatctgatgaga |
15744933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 8e-65; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 48 - 426
Target Start/End: Complemental strand, 8999417 - 8999034
Alignment:
| Q |
48 |
gagagaatattccattttacaaaggagaacaccgcgagactcaaattaaaagccaatatagaagctggcac------caacaaaatatcttccatgcaag |
141 |
Q |
| |
|
|||||||||||||||||||| |||||||| | | ||||||||||||||||||| || ||||| || || || |||||||||||||||| |||||| |
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|
| T |
8999417 |
gagagaatattccattttactaaggagaatatcacgagactcaaattaaaagcgaacatagaggccggtactagtatcaacaaaatatcttccctgcaag |
8999318 |
T |
|
| Q |
142 |
cgctttgcacccacctttggcgctcagtgatccgttccaaacaacttaacccgcatgaagaagtgaattttgtgttatgtataagtgttagatcaaggtt |
241 |
Q |
| |
|
||||| ||| |||||||||||||| ||||||||||| ||||||||| ||| || |||||||| ||||||||| ||||||| || ||||||| |||||| |
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|
| T |
8999317 |
cgctta-cactcacctttggcgctctgtgatccgttcaaaacaacttgacctacaagaagaagttaattttgtgatatgtattagcgttagattaaggtt |
8999219 |
T |
|
| Q |
242 |
ggttccaccactatcatatgattattttggaaatgctatgatagtttgtggggttacaatgaaagtcagggagctattagaagaaggcgggcttggtaaa |
341 |
Q |
| |
|
| |||||||| | || | || ||||||||||||||| |||||||||| ||||||||||||||| | || || | | |||||| || || |||||| |
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|
| T |
8999218 |
gattccaccattgccagaggaatattttggaaatgctttgatagtttgcaaggttacaatgaaagttggagaattacttggagaaggtggactgggtaaa |
8999119 |
T |
|
| Q |
342 |
ggtgctttagagatgtacaagattattgctttgcactctgatgagaagttaaagagtcaatatgaatcttggtcaagaacgccaa |
426 |
Q |
| |
|
||||||| |||||||| |||||| || |||||||||||||||| || ||| |||| |||||| || |||||||| ||||| |||| |
|
|
| T |
8999118 |
ggtgcttaagagatgtgcaagatgatagctttgcactctgatgcgatgttgaagaatcaatacgagtcttggtcgagaacaccaa |
8999034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 235 - 420
Target Start/End: Complemental strand, 7615532 - 7615347
Alignment:
| Q |
235 |
caaggttggttccaccactatcatatgattattttggaaatgctatgatagtttgtggggttacaatgaaagtcagggagctattagaagaaggcgggct |
334 |
Q |
| |
|
||||||| ||||||||| || || | |||||||||||||||| | ||| |||| ||||| ||||||||| ||||| | | |||||||| || || |
|
|
| T |
7615532 |
caaggttagttccaccattaccagaatattattttggaaatgcacttataagttgtatggttaaaatgaaagttggggagttggtggaagaaggtggact |
7615433 |
T |
|
| Q |
335 |
tggtaaaggtgctttagagatgtacaagattattgctttgcactctgatgagaagttaaagagtcaatatgaatcttggtcaagaa |
420 |
Q |
| |
|
| |||||||||||| |||||| ||||| | |||| || ||| ||||||||||||| |||| ||| || || ||||||| ||||| |
|
|
| T |
7615432 |
ttgtaaaggtgcttgtgagatgaacaagttaattgtttcacacactgatgagaagttgaagaatcactacgagtcttggttaagaa |
7615347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 235 - 420
Target Start/End: Complemental strand, 7637349 - 7637164
Alignment:
| Q |
235 |
caaggttggttccaccactatcatatgattattttggaaatgctatgatagtttgtggggttacaatgaaagtcagggagctattagaagaaggcgggct |
334 |
Q |
| |
|
||||||| |||||||| || || | ||||||||||||||||| | ||| |||| ||||| |||||||| |||| | || || ||||| || || |
|
|
| T |
7637349 |
caaggttagttccaccgttaccagaagattattttggaaatgcacttataagttgtatggttaaaatgaaagctggggaattgttggaggaaggtggact |
7637250 |
T |
|
| Q |
335 |
tggtaaaggtgctttagagatgtacaagattattgctttgcactctgatgagaagttaaagagtcaatatgaatcttggtcaagaa |
420 |
Q |
| |
|
| ||||||||||||| |||||| ||||| | ||||||| ||| ||||||||||||| |||| ||| || || ||||||| ||||| |
|
|
| T |
7637249 |
ttgtaaaggtgctttggagatgaacaagttaattgcttcacacactgatgagaagttgaagaatcattacgagtcttggttaagaa |
7637164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 396
Target Start/End: Original strand, 7656000 - 7656135
Alignment:
| Q |
261 |
gattattttggaaatgctatgatagtttgtggggttacaatgaaagtcagggagctattagaagaaggcgggcttggtaaaggtgctttagagatgtaca |
360 |
Q |
| |
|
|||||||||||||| || || |||| ||| ||| ||| ||||||||| ||||| | || || ||||| ||| |||||||||||||||| |||| | | |
|
|
| T |
7656000 |
gattattttggaaacgcgattataggttgcgggtttaaaatgaaagttggggagttgttggaggaaggtgggattggtaaaggtgctttgttgatgaata |
7656099 |
T |
|
| Q |
361 |
agattattgctttgcactctgatgagaagttaaaga |
396 |
Q |
| |
|
|| | |||||||||||||| |||| || ||||||| |
|
|
| T |
7656100 |
agttaattgctttgcactcgaatgaaaaattaaaga |
7656135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 55 - 348
Target Start/End: Original strand, 40147022 - 40147315
Alignment:
| Q |
55 |
tattccattttacaaaggagaacaccgcgagactcaaattaaaagccaatatagaagctggcaccaacaaaatatcttccatgcaagcgctttgcaccca |
154 |
Q |
| |
|
|||||||||| ||||||||||| | ||| ||| ||||| |||||||| || || ||| |||||||||||||| ||| | ||| | |||| || || |
|
|
| T |
40147022 |
tattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaaaatatcatccctccaatcactttttacaca |
40147121 |
T |
|
| Q |
155 |
cctttggcgctcagtgatccgttccaaacaacttaacccgcatgaagaagtgaattttgtgttatgtataagtgttagatcaaggttggttccaccacta |
254 |
Q |
| |
|
||||||||||| |||||||||||||||||| || |||| || |||||||| ||| | || | ||| | | |||||||||||| ||||||||| | |
|
|
| T |
40147122 |
tctttggcgctctgtgatccgttccaaacaatttgacccacacgaagaagtttattatatggtcgcgataggagctagatcaaggtttgttccaccattg |
40147221 |
T |
|
| Q |
255 |
tcatatgattattttggaaatgctatgatagtttgtggggttacaatgaaagtcagggagctattagaagaaggcgggcttggtaaaggtgctt |
348 |
Q |
| |
|
| | |||||||||||||||||| | ||||||| ||||||||||||||| | ||| | || ||||| || ||||||||||||||||||| |
|
|
| T |
40147222 |
cctgaagattattttggaaatgctgttgaagtttgtagggttacaatgaaagcgggagagttgttggaagatggtgggcttggtaaaggtgctt |
40147315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 179
Target Start/End: Complemental strand, 8102888 - 8102799
Alignment:
| Q |
90 |
aaattaaaagccaatatagaagctggcaccaacaaaatatcttccatgcaagcgctttgcacccacctttggcgctcagtgatccgttcc |
179 |
Q |
| |
|
||||| |||||||| ||||| | || || ||||||||||||||| | ||||| |||| | ||||||||| ||||||||||||||||| |
|
|
| T |
8102888 |
aaattgaaagccaacttagaaacgggtacgaacaaaatatcttcccttcaagcactttttgcacacctttggtgctcagtgatccgttcc |
8102799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 420
Target Start/End: Original strand, 8936027 - 8936123
Alignment:
| Q |
324 |
gaaggcgggcttggtaaaggtgctttagagatgtacaagattattgctttgcactctgatgagaagttaaagagtcaatatgaatcttggtcaagaa |
420 |
Q |
| |
|
||||| || ||| |||||||||||| |||||| ||||| | |||||||| ||| ||||||||||||| |||| ||| ||||| ||||||| ||||| |
|
|
| T |
8936027 |
gaaggtggactttgtaaaggtgcttgtgagatgaacaagttaattgctttacacactgatgagaagttgaagaatcactatgagtcttggttaagaa |
8936123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 435
Target Start/End: Original strand, 8913532 - 8913630
Alignment:
| Q |
337 |
gtaaaggtgctttagagatgtacaagattattgctttgcactctgatgagaagttaaagagtcaatatgaatcttggtcaagaacgccaaactttgtta |
435 |
Q |
| |
|
||||||||||||| |||||| ||||| | ||||||| ||| |||| |||||||| |||| ||| || || ||||||| ||||| |||| |||||||| |
|
|
| T |
8913532 |
gtaaaggtgctttggagatgaacaagttaattgcttcacacgctgacgagaagttgaagaatcattacgagtcttggttaagaaatccaagctttgtta |
8913630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 348
Target Start/End: Complemental strand, 6500775 - 6500655
Alignment:
| Q |
228 |
gttagatcaaggttggttccaccactatcatatgattattttggaaatgctatgatagtttgtggggttacaatgaaagtcagggagctattagaagaag |
327 |
Q |
| |
|
|||||| ||||| | ||||||| | || || | |||||||||||||||||| |||||| |||| |||||| ||||||| | ||| | || ||||||| |
|
|
| T |
6500775 |
gttagaccaaggcttgttccactattaccacaagattattttggaaatgctgtgatagattgtagggttagcatgaaagctggtgagttgttggaagaag |
6500676 |
T |
|
| Q |
328 |
gcgggcttggtaaaggtgctt |
348 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
6500675 |
gcgggattggtaaaggtgctt |
6500655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 306
Target Start/End: Complemental strand, 11969329 - 11969143
Alignment:
| Q |
120 |
aacaaaatatcttccatgcaagcgctttgcacccacctttggcgctcagtgatccgttccaaacaacttaacccgcatgaagaagtgaattttgtgttat |
219 |
Q |
| |
|
||||| ||||||||| | |||||||||| ||| ||||| |||||||| ||| |||| || || ||| || |||| || |||||||| ||| | || || |
|
|
| T |
11969329 |
aacaacatatcttccttacaagcgcttttcactcacctctggcgctctgtggtccgctcaaatcaatttgacccacaagaagaagttcattatatggtag |
11969230 |
T |
|
| Q |
220 |
gtataagtgttagatcaaggttggttccaccactatcatatgattattttggaaatgctatgatagtttgtggggttacaatgaaag |
306 |
Q |
| |
|
| |||||||||| || || ||| ||||| || | | |||||||||||||||||| | ||| ||||||||||| ||||||||| |
|
|
| T |
11969229 |
taactggtgttagatcgagatttgtttcaccattaccggaggattattttggaaatgctgttataatttgtggggtttcaatgaaag |
11969143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 387
Target Start/End: Complemental strand, 4646 - 4589
Alignment:
| Q |
330 |
gggcttggtaaaggtgctttagagatgtacaagattattgctttgcactctgatgaga |
387 |
Q |
| |
|
||||||||||| || |||| |||||| ||||||| |||| ||||||||||||||||| |
|
|
| T |
4646 |
gggcttggtaagggctctttggagatgaacaagatgattgttttgcactctgatgaga |
4589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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