View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12100_low_4 (Length: 384)
Name: NF12100_low_4
Description: NF12100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12100_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 365
Target Start/End: Complemental strand, 41110143 - 41109795
Alignment:
| Q |
17 |
attcaactaccaatacaaatttcttaccgtaaaaaagtgatttgctattaaaatgagaaactacttgttgttttttgaaaaataatgtgaatgtatgata |
116 |
Q |
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| T |
41110143 |
attcaactaccaatacaaatttcttaccgtaaaaaagtgatttgctattaaaatgagaaactacttgttgttttttgaaaaataatgtgaatgtatgata |
41110044 |
T |
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| Q |
117 |
aataagagagaatgtttatataaagatttataaaaatatattactccatctggt-cnnnnnnnnnnnnngaataaaagattaaatcacattaatgaacaa |
215 |
Q |
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| T |
41110043 |
aataagagagaatgtttatataaagatttataaaaatatattactccatccggtcccttttttttttttgaataaaagattaaatcacattaatgaacaa |
41109944 |
T |
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| Q |
216 |
tttcttggatatacaccgtattcgagtgagcaatttgagccattttatgggtcagcccattacatgatctatgtatgtgaacaatggaacacgcgtcaaa |
315 |
Q |
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| T |
41109943 |
tttcttggatatacaccgtattggagtgagcaatttgagccattttatgggctaacccattacatgatctatctatgtgaataatggaacacgcgtcaaa |
41109844 |
T |
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| Q |
316 |
ctgagattggagaatctggatttttatatataagctgatcaagataagat |
365 |
Q |
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| T |
41109843 |
ctgagattggagaatccgga-tttcatatataagctgaccaagataagat |
41109795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 47300112 - 47300072
Alignment:
| Q |
239 |
gagtgagcaatttgagccattttatgggtcagcccattaca |
279 |
Q |
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| T |
47300112 |
gagtgggcaatctgagccattttatgggccagcccattaca |
47300072 |
T |
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