View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12100_low_5 (Length: 376)
Name: NF12100_low_5
Description: NF12100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12100_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 113 - 363
Target Start/End: Complemental strand, 4930305 - 4930056
Alignment:
| Q |
113 |
tcaaacaaactaggtgcataccaccacccaaacccaaagcttgaagaacaacgacggtgtctccacctacgatagcaacctcaatcttccgacatggagg |
212 |
Q |
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| T |
4930305 |
tcaaacaaaacaggtgcataccaccacccaaacccgaagcttgaagaacaacgacagtgtctccacctacgatcacaacctcaatcttccgacatggagg |
4930206 |
T |
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| Q |
213 |
gggcaaaacctgaaacctacaacaacaccagatctcggtacacctacaaccaatcagtagaagttgtcaacccaaaccataatcaaatccttgcatcaga |
312 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
4930205 |
gggcaaaacctgaaacctacaacaacaccaaatctcggcacacctacaaccaatcggtaaaagttgtcaacccaaaccataatcaaatccttgcgtcaga |
4930106 |
T |
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| Q |
313 |
tctcaaagcgacgaacaaggaattgccgaagaagaaaaggggatcacaggt |
363 |
Q |
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|||||||| ||||||||||| | ||||||| |||||||||||||||||||| |
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| T |
4930105 |
tctcaaag-gacgaacaagggactgccgaaaaagaaaaggggatcacaggt |
4930056 |
T |
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