View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12101_high_3 (Length: 384)
Name: NF12101_high_3
Description: NF12101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12101_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 7 - 370
Target Start/End: Complemental strand, 44673665 - 44673298
Alignment:
| Q |
7 |
ggaagaaagtaatgaaattatattggtgagagaaaagagggcagaaggaatataaatggaaggtagtggtgataaggaggtgcaattgactcggggatcn |
106 |
Q |
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| T |
44673665 |
ggaagaaagtaatgaaattatattggtgagagaaaagagggcagaaggaatataaatggaaggtagtggtgataaggaggtgcaattgactcggggatct |
44673566 |
T |
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| Q |
107 |
nnnnnnnnnnngt----tgagaaaatagaaatagaagtaatgtaaagagagagtgagtatttgaccaagttggtgagaaacacgagtggttacaattcac |
202 |
Q |
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| T |
44673565 |
tcttttttttcttcttctgagaaaatagaaatagaagtaatgtaaagagagagtgagtatttgaccaagttggtgagaaacacgagtggttacaattcac |
44673466 |
T |
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| Q |
203 |
ttattaagtgctccatttggtaggtagctacctctacttttatttacatctttttccaacctcttcttccacctcaccctctctatattacttcttttat |
302 |
Q |
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| T |
44673465 |
ttattaagtgctccatttggtaggtagctacctctacttttatttacatctttttccaacctcttcttccacctcaccctctctatattacttcttttat |
44673366 |
T |
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| Q |
303 |
tcttatccctaaacatgtgcaaattccacctattaacatttcaaaaaccctaacaaatttttagagca |
370 |
Q |
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| T |
44673365 |
tcttatccctaaacatgtgcaaattccacctattaacatttgaaaaaccctaacaaatttttagagca |
44673298 |
T |
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