View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12101_high_4 (Length: 376)
Name: NF12101_high_4
Description: NF12101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12101_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 32022764 - 32023046
Alignment:
| Q |
1 |
taaagtgaggaaaaaggagtttggttgatagtggtaaatgtagctaattttggaatggtaaaaagtagaggactagtttaatgctttgtgaaaaaataga |
100 |
Q |
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| T |
32022764 |
taaagtgaggaaaaaggagtttggtaaatagtggtaa-tgtagctaattttggaatggtaaaaagtagaggactagtttaatgctttgtgaaaaaataga |
32022862 |
T |
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| Q |
101 |
agattaattgattggtaattttgtttttatctgcagagggatttaatagttttgaacagaaacgtcgatgaaacataaatggattttatagttttgaaaa |
200 |
Q |
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| T |
32022863 |
agattaattgattggtaattttgtttttatctgcagagggatttaatagttttgaacagacacgtcgatgaaacataaatggattttatagttttgaaaa |
32022962 |
T |
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| Q |
201 |
ttaatttttgctttggtagtttaggtcgagaaact-----atataagtacaaggagaatgtaaaataaagtacaattgtatatt |
279 |
Q |
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| T |
32022963 |
ttaatttttgctttggttgtttaggtcgagaaactatataatataagtacaaggagaatgtaaaataaagtacaattgtatatt |
32023046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 264 - 366
Target Start/End: Original strand, 32023064 - 32023166
Alignment:
| Q |
264 |
agtacaattgtatattatgtgattgtttcatatttttaatctaggtatgtatattatgtacaattgttttactctaattttttgttgtttctttttatct |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32023064 |
agtacaattgtatattatgtgattgtttcatatttttaatctaggtatgtatattatgtacaattgttttattctaattttttgttgtttctttttatct |
32023163 |
T |
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| Q |
364 |
ctg |
366 |
Q |
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||| |
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| T |
32023164 |
ctg |
32023166 |
T |
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