View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12101_low_10 (Length: 223)
Name: NF12101_low_10
Description: NF12101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12101_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 35 - 209
Target Start/End: Complemental strand, 22996749 - 22996576
Alignment:
| Q |
35 |
aaagagtaaat-ctagtcattttatcaacataacaaagcaaaagttattaacaatatgaaataaatctgatgtgagaggagttaatgatgaatataaact |
133 |
Q |
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| T |
22996749 |
aaagagtaaattctagtcattttatcaacataacaaagcaaaagttattaacattacaaaataaatctgatgtgagaggagttaataatgaatataaact |
22996650 |
T |
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| Q |
134 |
cgctagtgtactgtcctatatgctaaaaattcaaataacttattcagatgatgactcataagagaataaatgtgat |
209 |
Q |
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| T |
22996649 |
cgctagtgtactgtcctatatgctaaaaatccaaataacttatatagatgatgactc--aagagaataattgtgat |
22996576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 15 - 131
Target Start/End: Complemental strand, 924096 - 923980
Alignment:
| Q |
15 |
cataggcaaagaattaggttaaagagtaaatctagtcattttatcaacataacaaagcaaaagttattaacaatatgaaataaatctgatgtgagaggag |
114 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
924096 |
cataggcaaagaattaggttaaagagtaaatccagtcattttatcaacataacaaagcaaaagttattaacaatatgaaataaatctgatgtgagaggag |
923997 |
T |
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| Q |
115 |
ttaatgatgaatataaa |
131 |
Q |
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| T |
923996 |
ttaatgatgaatataaa |
923980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 22964799 - 22964946
Alignment:
| Q |
16 |
ataggcaaagaattaggttaaagagtaaat-ctagtcattttatcaacataacaaagcaaaagttattaacaatatgaaataaatctgatgtgagaggag |
114 |
Q |
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||||||||||||| || |||||||| || ||||| |||||||||||||||||||||||| |||||||||| || ||||||||| |||| ||||||||| |
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| T |
22964799 |
ataggcaaagaatcagtcaaaagagtatattctagttattttatcaacataacaaagcaaa-gttattaacattacgaaataaatttgatatgagaggag |
22964897 |
T |
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| Q |
115 |
ttaatgatgaatataaactcgctagtgtactgtcctatatgctaaaaat |
163 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22964898 |
ttaataatgaatataaactcgctagtgtactgtcctatatgctaaaaat |
22964946 |
T |
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