View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12101_low_4 (Length: 433)
Name: NF12101_low_4
Description: NF12101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12101_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 37642946 - 37642663
Alignment:
| Q |
1 |
ttgatacggtcaatgtaatgtactataggttttgattcgtatttatttctaactctagagaataaaagaccgtgtatcaaactttaatgcaccaaagttc |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37642946 |
ttgataaggtcaatgtaatgtactataggttttgattcgtatttatttctaactctagagaataaaagaccgtgtatcaaactccaatgcaccaaagttc |
37642847 |
T |
|
| Q |
101 |
atggataagccacattaggttaaatcagttttatgattttaatgctttctaatattctatcatagtgacacacaattattagctaa-------------- |
186 |
Q |
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| T |
37642846 |
atggataagccgcattaggttaaatcagttttatgattttaatgctttctaatattctatcatagtgacacacaattattagctaaaccaacatagcctt |
37642747 |
T |
|
| Q |
187 |
--accgcgctcatggtgtttctttcggtcatcggttgggcacataaagtatgacataagctttttggcacctttaaattaagaa |
268 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37642746 |
ctaccgcgctcatggtgtttctttcgctcatcggttgggcacataaagtatgacataagctttttggcacctttaaattaagaa |
37642663 |
T |
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