View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12101_low_7 (Length: 326)
Name: NF12101_low_7
Description: NF12101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12101_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 48257869 - 48258169
Alignment:
| Q |
1 |
atgataagctataagttttaagcaacttgaacaactttcaattacacatgcctattcagattctgacaacatagcaaagtatttatgatcacctacccat |
100 |
Q |
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| T |
48257869 |
atgataagctataagttttaagcaacttgaacaactttcaattaaacatgcttattcagattctgacaacatagcaaagtatttatgatcacctacccat |
48257968 |
T |
|
| Q |
101 |
atatgtcattctaagaacatagttttcaatttcctcatggaaatgataagaagcaagttgagagggtgaaaggaaaaacatttatccttctctagtatgg |
200 |
Q |
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| T |
48257969 |
atatgtcattctaagaacaaagttttca---------tggaaatgataagaagcaagttgagagggtgaaaggaaaaacatttatccttctctagtatgg |
48258059 |
T |
|
| Q |
201 |
ctgttttaatcaggacaacgttccaagatattcctacctatgttataagttgctttttgattcctcgagggaatttgtgatagaattaaacaatctatat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48258060 |
ctgttttaatcaggacaacgttccaagatattcctacctatgttataagttgctttttgattcctcgagggaatttgtgatagaattaaacaatctatat |
48258159 |
T |
|
| Q |
301 |
gtaggttttg |
310 |
Q |
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|||||||||| |
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| T |
48258160 |
gtaggttttg |
48258169 |
T |
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