View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12102_low_1 (Length: 558)
Name: NF12102_low_1
Description: NF12102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12102_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 12 - 542
Target Start/End: Original strand, 39982318 - 39982848
Alignment:
| Q |
12 |
agagactacaaggggagaaagtaagtacctgagccaaatgctaagccaaaagcttaggcctacatttgagggaaatcctattaagaggtggtatagagat |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982318 |
agagactacaaggggagaaagtaagtacctgagccaaatgctaagccaaaagcttaggcctacatttgagggaaatcctattaagaggtggtatagagat |
39982417 |
T |
|
| Q |
112 |
accaagtacttcttccaggataactggcgaagatcctgggtatttgctctgtggatttgtgtcatgttaggcctatttgcctttaaatttgtgcaatata |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982418 |
accaagtacttcttccaggataactggcgaagatcctgggtatttgctctgtggattggtgtcatgttaggcctatttgcctttaaatttgtgcaatata |
39982517 |
T |
|
| Q |
212 |
ggagaagatctgcatataaagtgatggggcactgtgtgtgcatggcaaaaggggctgctgaaacacttaaattgaacatggccattatcttattgcctgt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982518 |
ggagaagatctgcatataaagtgatggggcactgtgtgtgcatggcaaaaggggctgctgaaacacttaaattgaacatggccattatcttattgcctgt |
39982617 |
T |
|
| Q |
312 |
ttgccgaaacaccatcacttggctcaggaataagaccaagctaggcgcttttgttccttttgatgatggcctcaattttcacaaggtaatttttgcttct |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982618 |
ttgccgaaacaccatcacttggctcaggaataagaccaagctaggcgcttttgttccttttgatgatggcctcaattttcacaaggtaatttttgcttct |
39982717 |
T |
|
| Q |
412 |
gctttttccatcaagagtgacaagataattaaatactagtacacactaatacgcatatgcattagtcatgtttgtaggattatagcaggtttcacaaggc |
511 |
Q |
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| T |
39982718 |
gctttttccatcaagagtgtcaagataactaaatactagtacacactaatacgcatatgcattagtcatgtttgtaggattatagcagctttcacaaggc |
39982817 |
T |
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| Q |
512 |
ataaaattatgagtatttttgcagatgatag |
542 |
Q |
| |
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| T |
39982818 |
ataaaattatgagtatttttgcagatgatag |
39982848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 25 - 405
Target Start/End: Original strand, 44914329 - 44914709
Alignment:
| Q |
25 |
ggagaaagtaagtacctgagccaaatgctaagccaaaagcttaggcctacatttgagggaaatcctattaagaggtggtatagagataccaagtacttct |
124 |
Q |
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| T |
44914329 |
ggagatagtaagtacctgagccaaatgctaagcataaagcttaagggtacatatgaatacaatcctgttcggaagaggtatagagatgccatttactttc |
44914428 |
T |
|
| Q |
125 |
tccaggataactggcgaagatcctgggtatttgctctgtggatttgtgtcatgttaggcctatttgcctttaaatttgtgcaatataggagaagatctgc |
224 |
Q |
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| ||||| || |||| |||| | ||| |||| | || |||||| |||| |||| || |||||||||| ||||| |||| || || |||| | ||| |
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| T |
44914429 |
tgcaggacaattggcaaagaacttggatattggtactatggattggtgttatgtgtggtctatttgcctacaaattcatgcagtacagaagaaaagatgc |
44914528 |
T |
|
| Q |
225 |
atataaagtgatggggcactgtgtgtgcatggcaaaaggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacacc |
324 |
Q |
| |
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||| |||| ||||| || |||||||||||||| ||||| || ||||| ||||| |||||||||||||| |||||||| || |||||||| ||||||||| |
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| T |
44914529 |
ttatgaagtaatgggtcattgtgtgtgcatggctaaaggtgcagctgagacactcaaattgaacatggctattatcttgttacctgtttgtcgaaacacc |
44914628 |
T |
|
| Q |
325 |
atcacttggctcaggaataagaccaagctaggcgcttttgttccttttgatgatggcctcaattttcacaaggtaattttt |
405 |
Q |
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||||| ||||| ||||| |||||||| |||||| | |||||||||||||||| |||||| || |||||||||| |||| |
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| T |
44914629 |
atcacatggcttaggaacaagaccaaactaggcattgctgttccttttgatgataacctcaacttccacaaggtaagtttt |
44914709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 161 - 404
Target Start/End: Original strand, 44898551 - 44898794
Alignment:
| Q |
161 |
tgtggatttgtgtcatgttaggcctatttgcctttaaatttgtgcaatataggagaagatctgcatataaagtgatggggcactgtgtgtgcatggcaaa |
260 |
Q |
| |
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|||||||| |||| |||| || |||||||||| ||||| |||| ||||| |||| | |||||||| |||||||||| || ||||| || ||||| || |
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| T |
44898551 |
tgtggattggtgttatgtgtggtctatttgcctacaaattcatgcagtatagaagaaaagctgcatatgaagtgatgggccattgtgtctgtatggctaa |
44898650 |
T |
|
| Q |
261 |
aggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacaccatcacttggctcaggaataagaccaagctaggcgct |
360 |
Q |
| |
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||| || ||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||| | || ||||| ||| | ||||||||||||||| | |
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| T |
44898651 |
aggtgcagctgagacactcaaattgaatatggccattatcttattacctgtttgccgaaacaccgtaacctggcttagggacaagaccaagctaggcatt |
44898750 |
T |
|
| Q |
361 |
tttgttccttttgatgatggcctcaattttcacaaggtaatttt |
404 |
Q |
| |
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||||||||||||||| |||| | |||||| |||||||||| |
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| T |
44898751 |
gctgttccttttgatgacaacctccactttcaccaggtaatttt |
44898794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 161 - 400
Target Start/End: Original strand, 44885223 - 44885462
Alignment:
| Q |
161 |
tgtggatttgtgtcatgttaggcctatttgcctttaaatttgtgcaatataggagaagatctgcatataaagtgatggggcactgtgtgtgcatggcaaa |
260 |
Q |
| |
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|||||||| | || |||||||| |||||||||| ||||||||||| ||| | |||| | |||| ||| | |||||||| || ||||| |||||||| || |
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| T |
44885223 |
tgtggattggagttatgttaggtctatttgcctacaaatttgtgcagtatcgaagaaaagctgcttatgaggtgatgggccattgtgtttgcatggctaa |
44885322 |
T |
|
| Q |
261 |
aggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacaccatcacttggctcaggaataagaccaagctaggcgct |
360 |
Q |
| |
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||| || ||||| ||||| |||||||||||||| ||||||| || ||||||||||||||||| | || |||||||||| ||||||||||||||| | |
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| T |
44885323 |
aggtgcagctgagacactcaaattgaacatggctcttatcttgttacctgtttgccgaaacactgttacatggctcaggagcaagaccaagctaggcatt |
44885422 |
T |
|
| Q |
361 |
tttgttccttttgatgatggcctcaattttcacaaggtaa |
400 |
Q |
| |
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||||||||||| |||| |||||| || |||||||||| |
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| T |
44885423 |
gttgttccttttaatgacaacctcaacttccacaaggtaa |
44885462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 256 - 399
Target Start/End: Complemental strand, 46562263 - 46562120
Alignment:
| Q |
256 |
gcaaaaggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacaccatcacttggctcaggaataagaccaagctag |
355 |
Q |
| |
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||||| || |||||||| || || || || |||||||| | || ||| |||||||||| |||||||||||||||||||||| | |||||||| ||| |
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| T |
46562263 |
gcaaagggtgctgctgagactctcaagttcaacatggcattaattttaatgcctgtttgtagaaacaccatcacttggctcagaagcaagaccaaattag |
46562164 |
T |
|
| Q |
356 |
gcgcttttgttccttttgatgatggcctcaattttcacaaggta |
399 |
Q |
| |
|
| | | ||||||| ||||||||| | |||| |||||||||||| |
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| T |
46562163 |
gagttgttgttccctttgatgataacatcaactttcacaaggta |
46562120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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