View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12102_low_2 (Length: 555)
Name: NF12102_low_2
Description: NF12102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12102_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 8 - 537
Target Start/End: Complemental strand, 45707503 - 45706981
Alignment:
| Q |
8 |
agaacctgtgctatgaataatttatgatcttgcggaggaggatactttcaaattctcataagatcgcttgacttgcaccgaaatccatctaagtgacatg |
107 |
Q |
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| T |
45707503 |
agaacctctactatgaatagtttatgatcttgcggaggaggatactttcaaattctcataagatcgcttgacttgcaccgaaatccatctaagtgacatg |
45707404 |
T |
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| Q |
108 |
aaaaagtacacaacggtttactgataactggagacaattcgtaacaaatagtcacaaatgcattaattagaaactcacagcgaaatcataactaacaaca |
207 |
Q |
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| T |
45707403 |
aaaaagtacacaacggtttactgataactggagacaattcgtaacaaatagtcacaaatgcattaattagaaactcacagcgaaatcataactaacaaca |
45707304 |
T |
|
| Q |
208 |
aaacatttgatttgcctcacttagcaaggacttcagtcttcaggtaattcacatatccatgtattcgagaataaaatttaattgcacagtgagggaaaaa |
307 |
Q |
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| T |
45707303 |
aaacatttgatttgcctcacttagcaaggacttcag-------gtaattcacatatccatgtattcgagaataaaatttaattgcatagtgagggaaaaa |
45707211 |
T |
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| Q |
308 |
gtaaagcacacatcaccttaatatcatttctaattttattttaagctcacttagttgtttaatcatttagttcattaattactttcaatgggatttgata |
407 |
Q |
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| T |
45707210 |
gtaaagcacacatcaccttaatatcatttctaattttattttaagctcacttagttgtttaatcatttagttcattaattactttcaatgggatttgata |
45707111 |
T |
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| Q |
408 |
attagctttgccccggacaaaataggcaattaaactgtccccgctcgtcctgcaaacacgatgtctatgatttcagatcgatatcgctcacccccttacc |
507 |
Q |
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| T |
45707110 |
attagctttgccccggacaaaataggcaattaaactgtccctgctcgtcctgcaaacactatgtctatgatttcagatcgatatcgctcacccccttacc |
45707011 |
T |
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| Q |
508 |
ttggcatgcttgactggcaaaatccttggt |
537 |
Q |
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| T |
45707010 |
ttggcatgcttgactggcaaaatccttggt |
45706981 |
T |
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