View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12102_low_3 (Length: 552)
Name: NF12102_low_3
Description: NF12102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12102_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 82 - 533
Target Start/End: Complemental strand, 26018238 - 26017787
Alignment:
| Q |
82 |
acttcaaacgtagttttgtagtttgatgatcataacacttatatcatcgatagagcctcgcgatacagataaatctacaagtttcttacaagcttggaag |
181 |
Q |
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|||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26018238 |
acttcaaatgtagttttgtaatttgattatcataacacttatatcatcgatagagcctcgcgatacagataaatctacaagtttcttacaagcttggaag |
26018139 |
T |
|
| Q |
182 |
gatccttgtctattgctctctacacaaaaaggaccagcaagatctatagcttcttgattactaacctgaacaagattgaaaagagaaactaaatcagtta |
281 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26018138 |
gatccttgtctattgctctctacacataaaggaccagcaagatctacagcttcttgattactaacctgaacaagattgaaaagagaaactaaatcagtta |
26018039 |
T |
|
| Q |
282 |
ctcggttaatagtactatagttgagcaaattgatctcatgaaaagaacattgcaattaattgatgaagtcctataccttttcccataatccatctgaagc |
381 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26018038 |
ctcgtttaatagtactatagttgagcaaattgatctcatgaaaagaacattgcaattaattgatgaagtcctataccttttcccataatccatctgaagc |
26017939 |
T |
|
| Q |
382 |
taagattaacaagtcatggtgaggttcaattctgagtactttggtctcaggctctgctatcacccattgtttcatgtgtccatcaccaatgctccttgaa |
481 |
Q |
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||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||| ||||||||||||||| |
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| T |
26017938 |
taagattaaaaagtcatgatgaggttcaattctgagtactttggtctcaggttctgctatcacatattgtttcatgtgtctatctccaatgctccttgaa |
26017839 |
T |
|
| Q |
482 |
acagcaagagatccttggattctccaaacaccgcggcacatatcaacatatc |
533 |
Q |
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| T |
26017838 |
acagcaagagatccttggattctccaaacaccgcggcacatatctacatatc |
26017787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 48 - 533
Target Start/End: Complemental strand, 26003536 - 26003041
Alignment:
| Q |
48 |
tgtcgtgttagttgtttgtgcttgttttaatgaaacttcaaacgtagttttgtagtttgatgatcataacacttatatcatcgatagagcctcgcgatac |
147 |
Q |
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|||||||||||| || |||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26003536 |
tgtcgtgttagtcgtctgtgtttgtattaatgaaacttcaaacgtagttctgtagtttgatgatcataacacttatatcgtcgatagagcctcgcgatac |
26003437 |
T |
|
| Q |
148 |
agataaatctacaagtttcttacaagcttggaaggatccttgtctattgctctctacacaaaaaggaccagcaagatctatagcttcttgattactaacc |
247 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| ||||| || | ||||| |||||||||||||||||| |
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| T |
26003436 |
agataaatctacaagtttcttacaagctgggaaggatccttgtctattgctccctgcacaataaggatgtgctatatctactgcttcttgattactaacc |
26003337 |
T |
|
| Q |
248 |
tgaacaagattgaaaagagaaactaaatcagttactcggttaatagta--ctatagttgagcaaattgatctcatgaaaaga----------acattgca |
335 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||| ||||| | || |||||||||| | |||| || ||||| | |||| ||| |
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| T |
26003336 |
tgaacaagattgaaaagagaaacttaatcagttactaagttaagactaaactatagttgaactg--tgatttcttgaaagaatttataattaacatcgca |
26003239 |
T |
|
| Q |
336 |
attaattgatgaagtcctataccttttcccataatccatctgaagctaagattaacaagtcatggtgaggttcaattctgagtactttggtctcaggctc |
435 |
Q |
| |
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|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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|
| T |
26003238 |
attaattggtcaagtcctataccttttcccataatccatctgaagctaagattaacaagtcatgatgaggttcaattctgagtactttggtctcaggttc |
26003139 |
T |
|
| Q |
436 |
tgctatcacccattgtttcatgtgtccatcaccaatgctccttgaaacagcaagagatccttggattctccaaacaccgcggcacatatcaacatatc |
533 |
Q |
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||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26003138 |
tgctatcacatattgtttcatgtgtctatctccaatgctccttgaaacagcaagagatccttggattctccaaacaccgcggcacatatcgacatatc |
26003041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 355 - 531
Target Start/End: Complemental strand, 30374471 - 30374295
Alignment:
| Q |
355 |
taccttttcccataatccatctgaagctaagattaacaagtcatggtgaggttcaattctgagtactttggtctcaggctctgctatcacccattgtttc |
454 |
Q |
| |
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|||||| ||||||||||||||||||||||| |||||||||||||| | |||||||||||| | ||||| ||||| ||||| ||| |||||||||||||| |
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| T |
30374471 |
taccttatcccataatccatctgaagctaatattaacaagtcatgttcaggttcaattctaataactttagtctcgggctccgctgtcacccattgtttc |
30374372 |
T |
|
| Q |
455 |
atgtgtccatcaccaatgctccttgaaacagcaagagatccttggattctccaaacaccgcggcacatatcaacata |
531 |
Q |
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| ||||| || ||||| | ||||| ||||||||||||||||| || |||||||||||||| || | ||||||||| |
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| T |
30374371 |
aagtgtcggtctccaattcctcttgatacagcaagagatccttgaatcctccaaacaccgcgacataaatcaacata |
30374295 |
T |
|
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