View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12102_low_4 (Length: 541)
Name: NF12102_low_4
Description: NF12102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12102_low_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 13 - 541
Target Start/End: Complemental strand, 44398316 - 44397788
Alignment:
| Q |
13 |
aacctgtgaccggcctttccgcgtagccatgtgaagagcagtattacccttcttatctcgttcgttcaatatagtaggatcagcttgtaatatctcctcc |
112 |
Q |
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| T |
44398316 |
aacctgtgaccggcctttccgcgtagccatgtgaagagcggtattacccttcttatctcgttcgttcaatatagtaggatcagcttgtaatatctcctcc |
44398217 |
T |
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| Q |
113 |
accactgacgtactctgtcctttgacagccatatgtagcgcagtttgaccttttttatctttgatgcaaactattcctggatcacggacaataagtgctt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44398216 |
accactgacgtactctgtcctttgacagccatatgtagcgcagtttgaccttttttatctttgatgcaaactattcctggatcacggacaataagtgctt |
44398117 |
T |
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| Q |
213 |
tcacaatacggtcgacgccatacctaacagcattatgtagtgcagttttcccattttttctaactataaacatggagctgacatcaacatccaaaatagc |
312 |
Q |
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| T |
44398116 |
tcacaatacggtcgacgccatacctaacagcattatgtagtgcagttttcccattttttctaactataaacatggagctgacatcaacatccaaaatagc |
44398017 |
T |
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| Q |
313 |
atttaccacatccaagtgatcttgaactgcagcagcatataggggactggtgtttgtcgagtcacacaacttacagaccgcaggccaggcactcaaaatc |
412 |
Q |
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| T |
44398016 |
atttaccacatccaagtgatcttgaacagcagcagcatataggggactggtgtttgtcgagtcgcacaacttacagaccgcaggccaggcactcaaaatc |
44397917 |
T |
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| Q |
413 |
tccctcacaatatctggaaaaaagttagacgttaacatcatgattgaaaaacttaattatatattcattacaatcaagattgtaacatttgctaccagtg |
512 |
Q |
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| T |
44397916 |
tccctcacaatatctggaaaaaagttagacgttaacatcatgattgaaaaacttaattatatattcattacaatcaagattgtaacatttgctaccagtg |
44397817 |
T |
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| Q |
513 |
tttatccattacaattatgcaattctatc |
541 |
Q |
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| T |
44397816 |
tttatccattacaattatgcaattctatc |
44397788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 27 - 435
Target Start/End: Complemental strand, 11359269 - 11358861
Alignment:
| Q |
27 |
ctttccgcgtagccatgtgaagagcagtattacccttcttatctcgttcgttcaatatagtaggatcagcttgtaatatctcctccaccactgacgtact |
126 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||| | || ||||||||||||||||||||||| ||||| |||| |
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| T |
11359269 |
ctttccgagtagccatgtgaagagctgtattacccttcttatctttttcgtttaataccatcgggtcagcttgtaatatctcctccactactgaagtaca |
11359170 |
T |
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| Q |
127 |
ctgtcctttgacagccatatgtagcgcagtttgaccttttttatctttgatgcaaactattcctggatcacggacaataagtgctttcacaatacggtcg |
226 |
Q |
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||||||||| ||||||||||| || || |||||||| |||||||||||||||||||| ||| ||| || | ||||||||||||| || || ||| |
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| T |
11359169 |
ctgtccttttacagccatatgaagtgctgtttgaccctttttatctttgatgcaaacaattgctgagtccctagcaataagtgcttttacgatgcggaga |
11359070 |
T |
|
| Q |
227 |
acgccatacctaacagcattatgtagtgcagttttcccattttttctaactataaacatggagctgacatcaacatccaaaatagcatttaccacatcca |
326 |
Q |
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| T |
11359069 |
atgccatacctagccgcattgtgcaacgcagttttgccatttttccttactatcatcattgaactgacatcaacatccaaaatagcattcaccacatcca |
11358970 |
T |
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| Q |
327 |
agtgatcttgaactgcagcagcatataggggactggtgtttgtcgagtcacacaacttacagaccgcaggccaggcactcaaaatctccctcacaatatc |
426 |
Q |
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| || |||||||| ||||| ||| || ||||| ||||| | ||||| || |||||||| || ||||||| | ||||||||||||||||||||| || |
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| T |
11358969 |
aatggtcttgaacagcagctaaataaagtggactagtgttcgaagagtcgcataacttacaagcctcaggccaagtactcaaaatctccctcacaatttc |
11358870 |
T |
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| Q |
427 |
tggaaaaaa |
435 |
Q |
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||||||||| |
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| T |
11358869 |
tggaaaaaa |
11358861 |
T |
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