View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12103_high_1 (Length: 720)
Name: NF12103_high_1
Description: NF12103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12103_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 88 - 712
Target Start/End: Complemental strand, 32887909 - 32887284
Alignment:
| Q |
88 |
aattgaacgaatgagatgagtgttgaagaagaatgggttttaaattggtgttgaatgttgttgacgaggaagaaggtgaaatgcgaatgattcacctaat |
187 |
Q |
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| T |
32887909 |
aattgaacgaatgagatgagtgttgaggaagaatgggttttaaattggtgttgaatgttgttgacgaggaagaaggtgaaatgcgaatgattcacctaat |
32887810 |
T |
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| Q |
188 |
catatgggttggatcatatcatgttatgcgtcagcaatatcaccttcttcttttttaaggcaattattatttttagtctttttaaaggcaattattctaa |
287 |
Q |
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| T |
32887809 |
tctatgggttggatcatatcatgttatgcgtcagcaatatcaccttttt-ttttttaaggcaattattttttttagtcttttttaaggcaattattctaa |
32887711 |
T |
|
| Q |
288 |
tatgcaagctctctcnnnnnnnct--gagttgaactactcactctttttattgatctcttgtccgtatagatagaagattgtttcatattatattgaatt |
385 |
Q |
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| T |
32887710 |
catgcaagctctctctttttttctttgagttgaactgctcactctttttattgatctcttgtccttatagagagaagattgtttcatataatatagaatt |
32887611 |
T |
|
| Q |
386 |
taattgaaaggtaaataaaatataagattgtttcattaagatatcaaacttagattttactagtaattcatcttttaccgaacattgttaatcatttgac |
485 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||| ||||| |
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| T |
32887610 |
taatcgaaaggtaaataaaatataagattgtttcattaagatatcaaacttagattttactggtaattcatcttttacggaaccttgttaatcacttgac |
32887511 |
T |
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| Q |
486 |
tctatcgtttgattccctcctcgttgtgttttcatggtttgatttcttctcattgttttcaaagtcaaatatcgatgttcaaattattttgagtattata |
585 |
Q |
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| T |
32887510 |
tctatggtttgattccctcctcattgtgttttcatggtttgatttcttctcattgttttcaaagtcaaatatcgatgttcaatttattttgagtattata |
32887411 |
T |
|
| Q |
586 |
tcaaaagagttgtttgtggtatagtataaaaataattgcgtatcagtatcaaatatctacaagattctctcaaaactccttctcgttcggcttaaacaaa |
685 |
Q |
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| T |
32887410 |
tcaaaagagttgtttgtggtatagtataaaaataattgggtatcaatatcaaatatctacaagattctctcaaaacttcttgtcgttcggcttaaacaga |
32887311 |
T |
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| Q |
686 |
tcatccataagtgcatctctgcttctc |
712 |
Q |
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| T |
32887310 |
tcatccataagtgtatatctgattctc |
32887284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 32887979 - 32887949
Alignment:
| Q |
18 |
gcttttacagcacccaccaccatcttcaaag |
48 |
Q |
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| T |
32887979 |
gcttttacagcacccaccaccatcttcaaag |
32887949 |
T |
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