View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12103_high_5 (Length: 425)

Name: NF12103_high_5
Description: NF12103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12103_high_5
NF12103_high_5
[»] chr4 (17 HSPs)
chr4 (200-403)||(35241357-35241560)
chr4 (158-400)||(35283625-35283846)
chr4 (201-403)||(35278148-35278351)
chr4 (16-155)||(35283445-35283584)
chr4 (16-151)||(35277934-35278069)
chr4 (207-401)||(35287195-35287391)
chr4 (242-398)||(35253630-35253786)
chr4 (21-155)||(35241152-35241286)
chr4 (30-150)||(35271266-35271386)
chr4 (203-396)||(35271467-35271666)
chr4 (31-127)||(35275295-35275391)
chr4 (317-394)||(35238385-35238462)
chr4 (201-258)||(35275487-35275544)
chr4 (315-395)||(35247083-35247163)
chr4 (32-126)||(35286991-35287085)
chr4 (106-155)||(35253480-35253529)
chr4 (343-396)||(35275605-35275658)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 3e-89; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 200 - 403
Target Start/End: Original strand, 35241357 - 35241560
Alignment:
Q  200 tatatatatcatgaaacatcaaaacataatgaaccaatcatcaagttacaaaggaaggactaatgcagaagagtgagtagaaggggatatgaaaagaaag 299  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35241357 tatatatatcatgaaacatcaaaacataatgaatcaatcctcaagttacaatggaaggactaatgcagaagagtgagtagaaggggatatgaaaagaaag 35241456  T
Q  300 agactcacnnnnnnngcatcccataattttactgttttatcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatggtag 399  Q
    ||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35241457 agactcactttttttgcatcccataattttactgttttatcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacttctaagatggtag 35241556  T
Q  400 atga 403  Q
    ||||    
T  35241557 atga 35241560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 158 - 400
Target Start/End: Original strand, 35283625 - 35283846
Alignment:
Q  158 ccaacaacattgcacaacactctctcgagcaatacatatacatatatatatcatgaaacatcaaaacataatgaaccaatcatcaagttacaaaggaagg 257  Q
    |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35283625 ccaacaacattgcacaacactctctcgagcaatacatat--------atatcatgaaacatcaaaacataatgaaccaatcatcaagttacaaaggaagg 35283716  T
Q  258 actaatgcagaagagtgagtagaaggggatatgaaaagaaagagactcacnnnnnnngcatcccataattttactgttttatcagcagaagatgttgcaa 357  Q
    ||||||||||||||||||||||             |||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  35283717 actaatgcagaagagtgagtag-------------aagaaagagactcactttttttgcatcccataattttactgttttatcagcagaagatgttgcaa 35283803  T
Q  358 atatagtcgatcctggttgaaatctaacatctaagatggtaga 400  Q
    ||||||| ||||||||||||||||| || || |||||||||||    
T  35283804 atatagttgatcctggttgaaatctcacgtcaaagatggtaga 35283846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 201 - 403
Target Start/End: Original strand, 35278148 - 35278351
Alignment:
Q  201 atatatatcatgaaacatcaaaacataatgaaccaatcatcaagttacaaa-ggaaggactaatgcagaagagtgagtagaaggggatatgaaaagaaag 299  Q
    |||| |||||||||||||||||||| || |||  ||||||||||||||||| |||||||||||||||| ||||||||||||| ||| |||||||||||||    
T  35278148 atatgtatcatgaaacatcaaaacacaacgaattaatcatcaagttacaaaaggaaggactaatgcagcagagtgagtagaatggggtatgaaaagaaag 35278247  T
Q  300 agactcacnnnnnnngcatcccataattttactgttttatcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatggtag 399  Q
    ||||||||       |||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35278248 agactcaccgttttagcatcccagaattttattgttttatcagcagaagatgttgcaaatatagtggatcctggttgaaatctaacatctaagatggtag 35278347  T
Q  400 atga 403  Q
    ||||    
T  35278348 atga 35278351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 16 - 155
Target Start/End: Original strand, 35283445 - 35283584
Alignment:
Q  16 acctgtgagtagttgttattcagttttgaatactaaaagacgagtgtaagactcaccataaagttcttcatcatgacacgctgattgaggtcccatactt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35283445 acctgtgagtagttgttattcagttttgaatactaaaagacgagtgtaaaactcaccataaagttcttcatcatgacacgctgattgaggtcccatactt 35283544  T
Q  116 taattacatcacaggtatcagacgagcaaataattcctcc 155  Q
    ||||||||||||||||||| |||||||||| |||||||||    
T  35283545 taattacatcacaggtatcggacgagcaaagaattcctcc 35283584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 35277934 - 35278069
Alignment:
Q  16 acctgtgagtagttgttattcagttttgaatactaaaagacgagtgtaagactcaccataaagttcttcatcatgacacgctgattgaggtcccatactt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| ||||||||||    
T  35277934 acctgtgagtagttgttattcagttttgaatactaaaagacgagtgtaggactcaccataaaggtcttcattatgacacgctgattgagatcccatactt 35278033  T
Q  116 taattacatcacaggtatcagacgagcaaataattc 151  Q
    |||||| ||||||||||||||||||||||| |||||    
T  35278034 taattaaatcacaggtatcagacgagcaaagaattc 35278069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 207 - 401
Target Start/End: Original strand, 35287195 - 35287391
Alignment:
Q  207 atcatgaaacatcaaaacataatgaaccaatcatcaagttacaaaggaaggactaatgcagaagagtgagtagaagggg-atatgaaaa-gaaagagact 304  Q
    ||||||||||| ||| |||||| | | ||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||    
T  35287195 atcatgaaacagcaagacataaggcatcaatcctcaagttacaaaggaaggactaatgcagaagagtgagtagaagggggatgtgaaaaagaaagagact 35287294  T
Q  305 cacnnnnnnngcatcccataattttactgttttatcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatggtagat 401  Q
    |||       |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||| |||||||||||| ||||| ||||||    
T  35287295 cactttttttgcatcccataattttactgttttatcagcagaggatgttgcaaatatagttgaacctggtttaaatctaacatcgaagatagtagat 35287391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 242 - 398
Target Start/End: Original strand, 35253630 - 35253786
Alignment:
Q  242 aagttacaaaggaaggactaatgcagaagagtgagtagaaggggatatgaaaagaaagagactcacnnnnnnngcatcccataattttactgttttatca 341  Q
    |||||||| |||||||| ||||||||| |||||||||||||| ||| |||||||||||||||||||       |||||||||||||||||||||||||||    
T  35253630 aagttacataggaaggaataatgcagatgagtgagtagaaggagatgtgaaaagaaagagactcacactgtttgcatcccataattttactgttttatca 35253729  T
Q  342 gcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatggta 398  Q
    |||||||| |||||||| | ||| |||||||||||||||||||| || |||||||||    
T  35253730 gcagaagaggttgcaaacacagttgatcctggttgaaatctaacttcgaagatggta 35253786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 35241152 - 35241286
Alignment:
Q  21 tgagtagttgttattcagttttgaatactaaaagacgagtgtaagactcaccataaagttcttcatcatgacacgctgattgaggtcccatactttaatt 120  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||| |||  || ||| |||||||||||||||| |||||||||||||||    
T  35241152 tgagtagttgtcattcagttttgaatactaaaagatgagtgtaagactcacaatacagtggttaatcctgacacgctgattgagatcccatactttaatt 35241251  T
Q  121 acatcacaggtatcagacgagcaaataattcctcc 155  Q
    |||| || |||||| |||||||||| | |||||||    
T  35241252 acattactggtatcggacgagcaaagagttcctcc 35241286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 30 - 150
Target Start/End: Original strand, 35271266 - 35271386
Alignment:
Q  30 gttattcagttttgaatactaaaagacgagtgtaagactcaccataaagttcttcatcatgacacgctgattgaggtcccatactttaattacatcacag 129  Q
    |||||||||||||||||||||||| | |||||| ||||||||  ||||||| || ||| |||||| ||| | ||| ||||||||||||||| |||||||     
T  35271266 gttattcagttttgaatactaaaatatgagtgttagactcactgtaaagttgttaatcgtgacacactgttcgagatcccatactttaattgcatcacat 35271365  T
Q  130 gtatcagacgagcaaataatt 150  Q
    |||||||||||||||| ||||    
T  35271366 gtatcagacgagcaaagaatt 35271386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 396
Target Start/End: Original strand, 35271467 - 35271666
Alignment:
Q  203 atatatcatgaaacatcaaaacataatgaaccaatcatcaagttacaaaggaaggactaatgcagaagagtgagtagaaggggatatgaaaagaaagaga 302  Q
    ||||||||||||||||||||||||||||||  ||||    ||||||||||||| ||||| ||||||||||||||||||||| | || ||||||||||| |    
T  35271467 atatatcatgaaacatcaaaacataatgaattaatccatgagttacaaaggaaagactattgcagaagagtgagtagaaggagctaagaaaagaaagaaa 35271566  T
Q  303 ctcac------nnnnnnngcatcccataattttactgttttatcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatgg 396  Q
    || ||             || | ||||| |||||||||| ||||||||||||| |||||||||||||  ||||||| | ||||||| || ||||||||||    
T  35271567 cttactcttgttctttttgcgtgccatagttttactgttctatcagcagaagaagttgcaaatataggtgatcctgatcgaaatctgacttctaagatgg 35271666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 35275295 - 35275391
Alignment:
Q  31 ttattcagttttgaatactaaaagacgagtgtaagactcaccataaagttcttcatcatgacacgctgattgaggtcccatactttaattacatcac 127  Q
    ||||||||||||||||||||||| |  ||||| ||||||||| ||| |||  | |||||||||||||||||||| ||||||| ||||||| ||||||    
T  35275295 ttattcagttttgaatactaaaatataagtgtcagactcaccttaatgttgctaatcatgacacgctgattgagatcccataatttaattgcatcac 35275391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 394
Target Start/End: Original strand, 35238385 - 35238462
Alignment:
Q  317 atcccataattttactgttttatcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagat 394  Q
    ||||||||||||||||| ||||||||  ||||| |||||||||||| | | |||||||||||||||||| ||| ||||    
T  35238385 atcccataattttactgctttatcagaggaagaagttgcaaatatatttgttcctggttgaaatctaacttctgagat 35238462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 35275487 - 35275544
Alignment:
Q  201 atatatatcatgaaacatcaaaacataatgaaccaatcatcaagttacaaaggaagga 258  Q
    |||||||| |||||||||||||||||||||||  |||| |||||||||||||||||||    
T  35275487 atatatatgatgaaacatcaaaacataatgaattaatcctcaagttacaaaggaagga 35275544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 395
Target Start/End: Original strand, 35247083 - 35247163
Alignment:
Q  315 gcatcccataattttactgttttatcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatg 395  Q
    |||||||||| ||||||||||  ||||  ||||| |||||||||| |||| |||  ||||||||||||||| |||||||||    
T  35247083 gcatcccatagttttactgttccatcacgagaagttgttgcaaatctagttgattttggttgaaatctaacttctaagatg 35247163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 35286991 - 35287085
Alignment:
Q  32 tattcagttttgaatactaaaagacgagtgtaagactcaccataaagttcttcatcatgacacgctgattgaggtcccatactttaattacatca 126  Q
    ||||| ||||||||||| |||||| |||||||||||||||| || |||| || ||| | | || | ||||||| |||||||||| |||| |||||    
T  35286991 tattctgttttgaatacaaaaagaggagtgtaagactcaccttacagtttttaatcttaatacaccgattgagatcccatacttgaattccatca 35287085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 35253480 - 35253529
Alignment:
Q  106 tcccatactttaattacatcacaggtatcagacgagcaaataattcctcc 155  Q
    ||||||||||||||||||||||||||||| |||| ||||| || ||||||    
T  35253480 tcccatactttaattacatcacaggtatcggacgtgcaaagaactcctcc 35253529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 396
Target Start/End: Original strand, 35275605 - 35275658
Alignment:
Q  343 cagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatgg 396  Q
    ||||||| |||||||||||||  ||| |||||||||||||||  ||||||||||    
T  35275605 cagaagaagttgcaaatataggtgatgctggttgaaatctaaattctaagatgg 35275658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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