View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12103_high_7 (Length: 339)
Name: NF12103_high_7
Description: NF12103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12103_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 325952 - 325668
Alignment:
| Q |
18 |
gctctgtcaatcaattctaatgcaaaatagagaccaacataaaccctaaacaaaaaagcatgtcctaaacaacatataacctaacagattaacctaaata |
117 |
Q |
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| T |
325952 |
gctctgtcaatcaattctaatgcaaaatagagaccaacataaaccctaaac-------------------aacatataacctaacagattaacctaaata |
325872 |
T |
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| Q |
118 |
acatataacctaacagattaatgaaaacatactactcataaccatgccctaaatatgtgcaaactcaacaattcaaactctgttagataacagattggct |
217 |
Q |
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| T |
325871 |
acatataacctaacagattaatgaaaacatactactcataaccatgccctaaatacgtgcaagctcaacaattcaaactctgttagataacagattggct |
325772 |
T |
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| Q |
218 |
aaattgagtgactacctttaatttcatagctcaatttatcagttcataagtttgggtgatcaaattctcagacctcgacaacttcaataactaaagtatt |
317 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
325771 |
aaattgagtgactacctttaatttcatatctcaatttatcatttcataagtttgggtgatcaaattctcagacctcgacaacttcaataactaaagtatt |
325672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 197 - 319
Target Start/End: Complemental strand, 324268 - 324144
Alignment:
| Q |
197 |
ctgttagataacagattggctaaattgagtgactacctttaatttcatagctcaatttatcagttcataagtttgggtgatcaaat--tctcagacctcg |
294 |
Q |
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|||||| |||| ||||||| |||||||| | || | |||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| |
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| T |
324268 |
ctgttaaataaaagattggttaaattgattcacagcttttaatttcatagctcaatttatctgttcataaatttgggtgatcaaattctctcagacctct |
324169 |
T |
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| Q |
295 |
acaacttcaataactaaagtattga |
319 |
Q |
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|||| ||||| ||||||| |||||| |
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| T |
324168 |
acaatttcaagaactaaaatattga |
324144 |
T |
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