View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12103_low_2 (Length: 578)

Name: NF12103_low_2
Description: NF12103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12103_low_2
NF12103_low_2
[»] chr5 (3 HSPs)
chr5 (23-352)||(39252696-39253025)
chr5 (428-561)||(39253050-39253184)
chr5 (361-396)||(39253019-39253054)
[»] chr1 (1 HSPs)
chr1 (220-364)||(15837953-15838097)
[»] chr4 (11 HSPs)
chr4 (243-362)||(2367689-2367808)
chr4 (251-369)||(2519153-2519271)
chr4 (241-365)||(12124748-12124872)
chr4 (243-362)||(2472019-2472138)
chr4 (298-358)||(2477499-2477559)
chr4 (241-365)||(12126804-12126928)
chr4 (251-332)||(2486264-2486345)
chr4 (241-365)||(2373251-2373374)
chr4 (251-343)||(2491074-2491166)
chr4 (246-359)||(2621177-2621290)
chr4 (335-391)||(2393707-2393763)


Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 23 - 352
Target Start/End: Original strand, 39252696 - 39253025
Alignment:
Q  23 tatataatgaaagtgagtgaatgaattgagagaaatcggtggtaactaacgatggcggcatcaccatccttttgtcatagaaggagcagatcatcgaatt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39252696 tatataatgaaagtgagtgaatgaattgagagaaatcggtggtaactaacgatggcggcatcaccatccttttgtcatagaaggagcagatcatcgaatt 39252795  T
Q  123 ttcaaacaagaatgatggcagaagcatgttcatatttaccagagtttaccagaggagttataggaatgcatcttgaaattccacaacgcagacaatcaca 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39252796 ttcaaacaagaatgatggcagaagcatgttcatatttaccagagtttaccagaggagttatgggaatgcatcttgaaattccacaacgcagacaatcaca 39252895  T
Q  223 ctttgaagtccgtctcttttgtctccatacagtttctctccatcagcaaccgtctccgatcctccctcgcaatcaccgatcaaacaatcccttcccttcc 322  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39252896 ctttgaagtccgtctctttcgtctccatacagtttctctccatcagcaaccgtctccgatcctccctcgcaatcaccgatcaaacaatcccttcccttcc 39252995  T
Q  323 tcttctctttgaaaggttccccaacctcac 352  Q
    ||||||||||||||||||||||||||||||    
T  39252996 tcttctctttgaaaggttccccaacctcac 39253025  T

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Target: chr5; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 428 - 561
Target Start/End: Original strand, 39253050 - 39253184
Alignment:
Q  428 aaatttacacct-cgtcaaatccctcagtctctcccaccacaacctctcttttcttgcaaaaaggttgcgagctatgtccaaacagatgaaaaatttgag 526  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39253050 aaatttacaccttcgtcaaatccctcagtctctcccaccacaacctctcttttcttgcaaaaaggttgcgagctatgtccaaacagatgaaaaatttgag 39253149  T
Q  527 ctctttcacttataccaaaatggctgattccaaca 561  Q
    ||||||||||||||||||||||||| |||||||||    
T  39253150 ctctttcacttataccaaaatggctaattccaaca 39253184  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 361 - 396
Target Start/End: Original strand, 39253019 - 39253054
Alignment:
Q  361 acctcactcgcatatccaaaaaagttaacctaaatt 396  Q
    ||||||||||||||||||||||||||||||||||||    
T  39253019 acctcactcgcatatccaaaaaagttaacctaaatt 39253054  T

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Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 220 - 364
Target Start/End: Original strand, 15837953 - 15838097
Alignment:
Q  220 acactttgaagtccgtctcttttgtctccatacagtttctctccatcagcaaccgtctccgatcctccctcgcaatcaccgatcaaacaatcccttccct 319  Q
    ||||||| |||||| ||||  | ||||||| ||||||||||||||||| |||||||||||||| |||||||  |||||  |||||||||||||||| | |    
T  15837953 acactttcaagtccctctcgatggtctccaaacagtttctctccatcaccaaccgtctccgattctccctcaaaatcatagatcaaacaatccctttcat 15838052  T
Q  320 tcctcttctctttgaaaggttccccaacctcacatccctcgacct 364  Q
    ||||   |||||  |||||||||| ||||| ||||| ||||||||    
T  15838053 tcctaacctcttccaaaggttccctaacctaacatctctcgacct 15838097  T

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Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 243 - 362
Target Start/End: Original strand, 2367689 - 2367808
Alignment:
Q  243 gtctccatacagtttctctccatcagcaaccgtctccgatcctccctcgcaatcaccgatcaaacaatcccttcccttcctcttctctttgaaaggttcc 342  Q
    ||||||| ||| ||||||||||||| |||||||||||||| |||| | |||||  ||||| |||||||||||| ||||  ||  || ||  |||||||||    
T  2367689 gtctccaaacaatttctctccatcaccaaccgtctccgattctccatagcaatgtccgataaaacaatccctttcctttatcgccttttccaaaggttcc 2367788  T
Q  343 ccaacctcacatccctcgac 362  Q
    ||||||||||||||||||||    
T  2367789 ccaacctcacatccctcgac 2367808  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 251 - 369
Target Start/End: Complemental strand, 2519271 - 2519153
Alignment:
Q  251 acagtttctctccatcagcaaccgtctccgatcctccctcgcaatcaccgatcaaacaatcccttcccttcctcttctctttgaaaggttccccaacctc 350  Q
    ||||||||| ||||||| ||||||| | ||||||||  || ||||| | |||||||||||||||| ||||| || ||||||||| |||||||||||| |     
T  2519271 acagtttctgtccatcaccaaccgttttcgatcctcagtcacaatctcagatcaaacaatccctttccttcatcgtctctttgataggttccccaacgtt 2519172  T
Q  351 acatccctcgacctcactc 369  Q
    ||||| ||| || ||||||    
T  2519171 acatcactcaacatcactc 2519153  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 241 - 365
Target Start/End: Complemental strand, 12124872 - 12124748
Alignment:
Q  241 ttgtctccatacagtttctctccatcagcaaccgtctccgatcctccctcgcaatcaccgatcaaacaatcccttcccttcctcttctctttgaaaggtt 340  Q
    ||||||||| ||| ||||||||||||| ||||||||||| ||  ||| |||||||| | ||| |||||||||||| ||||   |  |||||  |||||||    
T  12124872 ttgtctccaaacaatttctctccatcaccaaccgtctccaattttccatcgcaatctctgatgaaacaatccctttccttgaccgcctcttccaaaggtt 12124773  T
Q  341 ccccaacctcacatccctcgacctc 365  Q
    ||||||||| | |||||||||||||    
T  12124772 ccccaaccttagatccctcgacctc 12124748  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 362
Target Start/End: Complemental strand, 2472138 - 2472019
Alignment:
Q  243 gtctccatacagtttctctccatcagcaaccgtctccgatcctccctcgcaatcaccgatcaaacaatcccttcccttcctcttctctttgaaaggttcc 342  Q
    ||||||| ||||||| ||||||||| ||| |||||| ||| ||||||| |||||  |  | |||||||||||| ||||| ||  ||||| ||||||||||    
T  2472138 gtctccaaacagtttttctccatcaccaatcgtctctgattctccctcacaatctactgtgaaacaatccctttccttcatcacctcttcgaaaggttcc 2472039  T
Q  343 ccaacctcacatccctcgac 362  Q
    | |||||||| || ||||||    
T  2472038 ctaacctcacctctctcgac 2472019  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 2477559 - 2477499
Alignment:
Q  298 ccgatcaaacaatcccttcccttcctcttctctttgaaaggttccccaacctcacatccct 358  Q
    |||||||||| ||||||||||||| || ||||||| |||||||||| ||| ||||||||||    
T  2477559 ccgatcaaaccatcccttcccttcatcctctctttcaaaggttccctaacgtcacatccct 2477499  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 365
Target Start/End: Complemental strand, 12126928 - 12126804
Alignment:
Q  241 ttgtctccatacagtttctctccatcagcaaccgtctccgatcctccctcgcaatcaccgatcaaacaatcccttcccttcctcttctctttgaaaggtt 340  Q
    ||||||||| ||| ||||||||||||| ||||||||||| || |||| ||||| || | ||| ||| |||||||| ||||   |  || ||  |||||||    
T  12126928 ttgtctccaaacaatttctctccatcaccaaccgtctcctattctccatcgcagtctcagatgaaaaaatccctttccttgaccgcctattcaaaaggtt 12126829  T
Q  341 ccccaacctcacatccctcgacctc 365  Q
    ||||||||| | |||||||||||||    
T  12126828 ccccaaccttagatccctcgacctc 12126804  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 2486345 - 2486264
Alignment:
Q  251 acagtttctctccatcagcaaccgtctccgatcctccctcgcaatcaccgatcaaacaatcccttcccttcctcttctcttt 332  Q
    ||||||||| ||||||| |||||||||||||| |||  || ||||| ||||  |||||||||||| ||||| || |||||||    
T  2486345 acagtttctgtccatcaccaaccgtctccgattctcggtcacaatctccgagaaaacaatccctttccttcatcgtctcttt 2486264  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 365
Target Start/End: Original strand, 2373251 - 2373374
Alignment:
Q  241 ttgtctccatacagtttctctccatcagcaaccgtctccgatcctccctcgcaatcaccgatcaaacaatcccttcccttcctcttctctttgaaaggtt 340  Q
    |||| |||| ||| ||||||||||||| ||| | |||||||| |||| | |||||  | ||| ||||||| |||| ||||  ||  |||||  |||||||    
T  2373251 ttgtttccaaacaatttctctccatcaccaatcatctccgattctccatagcaatgtc-gataaaacaattcctttccttaatcgcctcttccaaaggtt 2373349  T
Q  341 ccccaacctcacatccctcgacctc 365  Q
    |||||||||||| ||||||||||||    
T  2373350 ccccaacctcacctccctcgacctc 2373374  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 343
Target Start/End: Complemental strand, 2491166 - 2491074
Alignment:
Q  251 acagtttctctccatcagcaaccgtctccgatcctccctcgcaatcaccgatcaaacaatcccttcccttcctcttctctttgaaaggttccc 343  Q
    ||||||||| |||||||  |||||||||||||  ||  || ||||| |||||  ||||||||||| ||||  || ||||||||||||||||||    
T  2491166 acagtttctgtccatcacaaaccgtctccgattttcggtcacaatctccgatgcaacaatccctttccttaatcgtctctttgaaaggttccc 2491074  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 359
Target Start/End: Original strand, 2621177 - 2621290
Alignment:
Q  246 tccatacagtttctctccatcagcaaccgtctccgatcctccctcgcaatcaccgatcaaacaatcccttcccttcctcttctctttgaaaggttcccca 345  Q
    |||| ||||||| | ||||||| ||||||||| || | |||| || ||||| ||||| |||| ||||||| | ||||||  ||||| || |||||||| |    
T  2621177 tccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttcccta 2621276  T
Q  346 acctcacatccctc 359  Q
    |  |||||||||||    
T  2621277 atatcacatccctc 2621290  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 335 - 391
Target Start/End: Original strand, 2393707 - 2393763
Alignment:
Q  335 aaggttccccaacctcacatccctcgacctcactcgcatatccaaaaaagttaacct 391  Q
    ||||||||| ||||||||||| ||||| |||||||||   |||||||||||| ||||    
T  2393707 aaggttccctaacctcacatcactcgatctcactcgctactccaaaaaagttgacct 2393763  T

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