View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12103_low_3 (Length: 540)
Name: NF12103_low_3
Description: NF12103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12103_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 18 - 540
Target Start/End: Original strand, 44604305 - 44604816
Alignment:
| Q |
18 |
acagcatatataaaggcttcataaagaagttttcaagaacaaataacaaattgaattgtctgtcatttatcacagtgtgtgtttgacagaatcatgcatg |
117 |
Q |
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| T |
44604305 |
acagcatatataaaggcttcataaagaagttttcaagaacaaataacaaattgaattgtctttcatttatcacagtgtgtgtttgacagaatcatgcatg |
44604404 |
T |
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| Q |
118 |
gtaagtcaccgtaattacacttctatggagttttttgttttgtttctgagaggacacttctatgaaacttaaaatgtgttgacgtagtgatagttaatga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
44604405 |
gtaagtcaccgtaattacacttctatggagttttttgttttgtttctgagaggacacttctatgaaacttaaaatgtgttgaagtagtgatggttaatga |
44604504 |
T |
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| Q |
218 |
aggggttgaaaacaataaattctacaaaatcatttttaaacgattttagtgtagtatatggaggaatgaggtgaaaaattgtcacattttgtctaagaac |
317 |
Q |
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| T |
44604505 |
aggggttgaaaacaataaattctacaaaatcatttttaaacgattttagtgtagtatat----------ggtgaaaaattgtcacattttgtctaagaac |
44604594 |
T |
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| Q |
318 |
ttttttgtaatgtacctaattgctcaatttatatagtacttagttctttaatttagatattttatagatgatgttcgtatattatttaattatatgtatc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44604595 |
ttttttgtaatgtacctaattgctcaatttatatagtacttagttcttcaa-ttagatattttatagatgatgttcgtatattatttaattatatgtatc |
44604693 |
T |
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| Q |
418 |
ggtgtagccgtgtcggtcttctatattttttaaataagtagtatcgagtatcgacatgttgtgcaaatgtcaggtttttgtgcttcatattaagcaacat |
517 |
Q |
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| T |
44604694 |
ggtgtcgtcgtatcggtcttctatattttttaaataattagtatcgagtatcgacatgttgtgcaaatgtcaggttttcgtgcttcatattaagcaacat |
44604793 |
T |
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| Q |
518 |
agaggataaaggggaaatttatc |
540 |
Q |
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| T |
44604794 |
agaggataaaggggaaatttatc |
44604816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 347
Target Start/End: Original strand, 23445074 - 23445129
Alignment:
| Q |
292 |
aaaattgtcacattttgtctaagaacttttttgtaatgtacctaattgctcaattt |
347 |
Q |
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| T |
23445074 |
aaaattgtcatattttgtttaagaacttttttgtagtgtaccaaattgctcaattt |
23445129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 283 - 348
Target Start/End: Complemental strand, 3803396 - 3803331
Alignment:
| Q |
283 |
atgaggtgaaaaattgtcacattttgtctaagaacttttttgtaatgtacctaattgctcaattta |
348 |
Q |
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| T |
3803396 |
atgaggtgaaaaaatgttaaatgttgtttaagaacctttttgtagtgtaccaaattgctcaattta |
3803331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 357 - 397
Target Start/End: Original strand, 23445149 - 23445188
Alignment:
| Q |
357 |
ttagttctttaatttagatattttatagatgatgttcgtat |
397 |
Q |
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| T |
23445149 |
ttagttctt-aatttagatcttttatagatgatgttcgtat |
23445188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 341
Target Start/End: Complemental strand, 25411432 - 25411376
Alignment:
| Q |
285 |
gaggtgaaaaattgtcacattttgtctaagaacttttttgtaatgtacctaattgct |
341 |
Q |
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| T |
25411432 |
gaggtgaaaaattgtcgtattttgtttaagagcttttttgtaatgaaccaaattgct |
25411376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 308
Target Start/End: Complemental strand, 6091083 - 6091036
Alignment:
| Q |
261 |
ttttagtgtagtatatggaggaatgaggtgaaaaattgtcacattttg |
308 |
Q |
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| T |
6091083 |
ttttagtatagtagatggatgaatgaggtgaaaaattgtcatattttg |
6091036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 348
Target Start/End: Original strand, 28026664 - 28026727
Alignment:
| Q |
285 |
gaggtgaaaaattgtcacattttgtctaagaacttttttgtaatgtacctaattgctcaattta |
348 |
Q |
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| T |
28026664 |
gaggtgaaaaattgtcatattttggttaagaactttttcgtaatgaaccaagttgcttaattta |
28026727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 47137635 - 47137580
Alignment:
| Q |
269 |
tagtatatggaggaatgaggtgaaaaattgtcacattttgtctaagaacttttttgt |
325 |
Q |
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| T |
47137635 |
tagtatatggatgaataaggtgaaaa-ttataacattttgtataagaacttttttgt |
47137580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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