View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12103_low_4 (Length: 478)
Name: NF12103_low_4
Description: NF12103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12103_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 8 - 458
Target Start/End: Original strand, 43850562 - 43851013
Alignment:
| Q |
8 |
caatgaggttaaagctttggtgtcaagaattgatgttggacttaacaaacattcagttccacttagagacttttatt-agaatcatggttgttggattcc |
106 |
Q |
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| T |
43850562 |
caatgaggttaaagctttggtgtcaagaattgatgttggacttatcaaaccttcagttccacttagagacttttatttagaatcatggttgttggattcc |
43850661 |
T |
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| Q |
107 |
caactctaagaaatcaaaagtaaagctaattatctaaactttggacatcattaggttgattggaaacatcggttaattccagcacgtgactctacaaaca |
206 |
Q |
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| T |
43850662 |
caactctaagaaatcaaaagtaaagctaattatctaaactttggacatcattaggttgattggaaacatcggttaattccagcaggtgactctacaaaca |
43850761 |
T |
|
| Q |
207 |
ttctttgctgctccgataatgcttgttcttctgtcatctcagttgcacagctccacttggctccttttatagtgtcctgctgcaaggtaacaaatatatc |
306 |
Q |
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| T |
43850762 |
ttctttgctgctccgataatgcttgttcttctgtcatctcagttgcacagctccacttggctccttttatagtgtcctgctgcaaggtaacaaatatatc |
43850861 |
T |
|
| Q |
307 |
agaaaatggttttgctccaaagccaatccataaacgttagaataataaaatctagaccctgtgtgcatgcgcgcgcatgcccatcactctttaatttcaa |
406 |
Q |
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| T |
43850862 |
agaaaatggttttgctccaaagccaatccataaacgttagaataataaaatctagaccctgtgtgcatgcgcgcgcatgcccatcactctttaatttcaa |
43850961 |
T |
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| Q |
407 |
ttcacaaaccacataacaagctattatttacattcaagttcaatcgaagaac |
458 |
Q |
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| T |
43850962 |
atcacaaaccacataacaagctattatttacattcaagttcaatcgaagaac |
43851013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 182 - 313
Target Start/End: Original strand, 24012369 - 24012500
Alignment:
| Q |
182 |
attccagcacgtgactctacaaacattctttgctgctccgataatgcttgttcttctgtcatctcagttgcacagctccacttggctccttttatagtgt |
281 |
Q |
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|||| |||||||| |||| ||||||| ||||||||||| | |||||||||||| || |||||||||| ||| | ||||||||||| |||||||||| || |
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| T |
24012369 |
attctagcacgtgcctctgcaaacatcctttgctgctctgctaatgcttgttcctcggtcatctcagctgcgccactccacttggcaccttttatagagt |
24012468 |
T |
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| Q |
282 |
cctgctgcaaggtaacaaatatatcagaaaat |
313 |
Q |
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| T |
24012469 |
cttgctgcaaggcaacaaatacatcagaaaat |
24012500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 31875852 - 31875780
Alignment:
| Q |
9 |
aatgaggttaaagctttggtgtcaagaattgatgttggacttaacaaacattcagttccacttagagactttt |
81 |
Q |
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||||||||||| ||||| ||||||||| ||||||||||||||| |||| |||||||||| | ||||| |||| |
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| T |
31875852 |
aatgaggttaatgcttttgtgtcaagagttgatgttggacttatcaaagcttcagttccagtgagagattttt |
31875780 |
T |
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