View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12103_low_7 (Length: 375)
Name: NF12103_low_7
Description: NF12103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12103_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 14 - 289
Target Start/End: Original strand, 6744347 - 6744622
Alignment:
| Q |
14 |
ctgtgttgcaacacaagacaaagttgtgagtcactaaaaaatgttggagtgtaaaccatgatgttactcnnnnnnnctttctcccatgaactcatcattc |
113 |
Q |
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| T |
6744347 |
ctgtgttgcaacacaagacaaagttgtgagtcactataaaatgttggagtgtaaaccatgatgttactctatttttttttctcccatgaactcatcattc |
6744446 |
T |
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| Q |
114 |
gtttctctgttccttttattgcttctttctttataatgttgaattgttcacagcaatagtgaacatagttaactatgttactctatttcaaatatttatc |
213 |
Q |
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| T |
6744447 |
atttctctgttccttttattgcttctttctttataatgtagaattgttcacagcaatagtgaacatagttaactatgttactctatttcaaatatttatc |
6744546 |
T |
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| Q |
214 |
aattgcagcccaatcacaacaagattttttgttgaacgcattgttacaaatacctgataaaattgaagctaactat |
289 |
Q |
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| T |
6744547 |
aattgcagcccaatcacaacaagattttttgttgaacgcattgttacaaatacctgataaaattgaagctaactat |
6744622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 289
Target Start/End: Original strand, 4433743 - 4434021
Alignment:
| Q |
14 |
ctgtgttgcaacacaagacaaagttgtgagtcactaaaaaatgttggagtgtaaaccatgatgttactcnnnnnnncttt---ctcccatgaactcatca |
110 |
Q |
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||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
4433743 |
ctgtgttgcaacacaagacaaagttgtgactcactataaaatgttggagtgtaaaccatgatgttactctctattttttttttctcccatgaactcatca |
4433842 |
T |
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| Q |
111 |
ttcgtttctctgttccttttattgcttctttctttataatgttgaattgttcacagcaatagtgaacatagttaactatgttactctatttcaaatattt |
210 |
Q |
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| T |
4433843 |
ttcgtttctctgttccttttattgcttctttctttataatgtagaattgttcacagcaatagtgaacatagttaactatgttactctatttcaaatattt |
4433942 |
T |
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| Q |
211 |
atcaattgcagcccaatcacaacaagattttttgttgaacgcattgttacaaatacctgataaaattgaagctaactat |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4433943 |
atcaattgcagcccaatcacaacaagattttttgttgaacgcattgttacagatacctgataaaattgaagctaactat |
4434021 |
T |
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