View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12103_low_8 (Length: 361)

Name: NF12103_low_8
Description: NF12103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12103_low_8
NF12103_low_8
[»] chr4 (3 HSPs)
chr4 (71-337)||(20936993-20937258)
chr4 (292-337)||(38340339-38340384)
chr4 (295-332)||(48821200-48821237)
[»] chr8 (2 HSPs)
chr8 (272-331)||(36918498-36918557)
chr8 (265-329)||(30676302-30676366)
[»] chr2 (1 HSPs)
chr2 (284-338)||(17560252-17560306)
[»] chr7 (4 HSPs)
chr7 (276-337)||(6567400-6567461)
chr7 (274-331)||(8261444-8261501)
chr7 (292-337)||(24839485-24839530)
chr7 (295-331)||(37240100-37240136)
[»] chr5 (1 HSPs)
chr5 (294-331)||(35109403-35109440)
[»] chr1 (3 HSPs)
chr1 (276-328)||(4254157-4254209)
chr1 (291-335)||(4865846-4865890)
chr1 (294-338)||(30895330-30895374)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 71 - 337
Target Start/End: Complemental strand, 20937258 - 20936993
Alignment:
Q  71 ttatgatgtgaaatttgtttaactataatgtgttacaaaatatgtagtggtgttccaatctagatgagattctttggtggaaattttatgattgagtgat 170  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20937258 ttatgatgtgaaatttgtttaactatgatgtgttacaaaatatgtagtggtgttccaatctagatgagattctttggtggaaattttatgattgagtgat 20937159  T
Q  171 gatccattccttgttccaaccttctaggttgtttcattttctctccatatatccaaccaagacaacaatctccatccaaaaatcnnnnnnnnnnggtgtt 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||          | ||||    
T  20937158 gatccattccttgttccaaccttctaggttgtttcattttctctccatatattcaaccaagacaacaatctccatccaaaaatc-ttttttggtgatgtt 20937060  T
Q  271 tgagattcgaacccctaactctacatattttatgtaatgtctttaccaactgagttaagctaacgag 337  Q
    |||||||||||||||  | ||| ||||||||||| ||||||||||||| ||||| ||| || |||||    
T  20937059 tgagattcgaaccccagattctgcatattttatgcaatgtctttaccatctgagctaaactcacgag 20936993  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 337
Target Start/End: Original strand, 38340339 - 38340384
Alignment:
Q  292 tacatattttatgtaatgtctttaccaactgagttaagctaacgag 337  Q
    ||||||||||||||| ||||  |||||||||||||||||| |||||    
T  38340339 tacatattttatgtattgtccataccaactgagttaagctcacgag 38340384  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 48821237 - 48821200
Alignment:
Q  295 atattttatgtaatgtctttaccaactgagttaagcta 332  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  48821237 atattttatgtattgtcttaaccaactgagttaagcta 48821200  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 272 - 331
Target Start/End: Complemental strand, 36918557 - 36918498
Alignment:
Q  272 gagattcgaacccctaactctacatattttatgtaatgtctttaccaactgagttaagct 331  Q
    |||||||||||||||| ||||||||||  |||||||| || |||||||||||||||||||    
T  36918557 gagattcgaacccctacctctacatataatatgtaatatccttaccaactgagttaagct 36918498  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 329
Target Start/End: Original strand, 30676302 - 30676366
Alignment:
Q  265 ggtgtttgagattcgaacccctaactctacatattttatgtaatgtctttaccaactgagttaag 329  Q
    |||||||| |||||||||||  | |||||||||  ||||  ||||||| ||||||||||||||||    
T  30676302 ggtgtttgggattcgaaccctgacctctacataaattatacaatgtctctaccaactgagttaag 30676366  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 338
Target Start/End: Complemental strand, 17560306 - 17560252
Alignment:
Q  284 cctaactctacatattttatgtaatgtctttaccaactgagttaagctaacgaga 338  Q
    ||||||||| ||||| ||||| |||||  ||||||||||||||||||| ||||||    
T  17560306 cctaactctgcatatattatgcaatgtacttaccaactgagttaagctcacgaga 17560252  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 337
Target Start/End: Original strand, 6567400 - 6567461
Alignment:
Q  276 ttcgaacccctaactctacatattttatgtaatgtctttaccaactgagttaagctaacgag 337  Q
    |||||||||| |  ||| ||||| ||||||||| || ||||||||||||||||||| |||||    
T  6567400 ttcgaaccccgacttctgcatatattatgtaatatccttaccaactgagttaagcttacgag 6567461  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 331
Target Start/End: Original strand, 8261444 - 8261501
Alignment:
Q  274 gattcgaacccctaactctacatattttatgtaatgtctttaccaactgagttaagct 331  Q
    |||||||||||| |||  ||||||||||||| | ||||| |||||||||| |||||||    
T  8261444 gattcgaaccccaaaccttacatattttatgcattgtctataccaactgacttaagct 8261501  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 337
Target Start/End: Complemental strand, 24839530 - 24839485
Alignment:
Q  292 tacatattttatgtaatgtctttaccaactgagttaagctaacgag 337  Q
    ||||||||||||| | ||||| |||||||||||||||||| |||||    
T  24839530 tacatattttatgcattgtctataccaactgagttaagctcacgag 24839485  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 37240100 - 37240136
Alignment:
Q  295 atattttatgtaatgtctttaccaactgagttaagct 331  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  37240100 atatattatgcaatgtctttaccaactgagttaagct 37240136  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 331
Target Start/End: Complemental strand, 35109440 - 35109403
Alignment:
Q  294 catattttatgtaatgtctttaccaactgagttaagct 331  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  35109440 catatattatgtattgtctttaccaactgagttaagct 35109403  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 328
Target Start/End: Complemental strand, 4254209 - 4254157
Alignment:
Q  276 ttcgaacccctaactctacatattttatgtaatgtctttaccaactgagttaa 328  Q
    |||||||||| | |||||||||| |||||||||||  ||| ||||||||||||    
T  4254209 ttcgaaccccaacctctacatatattatgtaatgtacttatcaactgagttaa 4254157  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 4865846 - 4865890
Alignment:
Q  291 ctacatattttatgtaatgtctttaccaactgagttaagctaacg 335  Q
    |||||||| ||||| ||||||  ||||||||||||||||||||||    
T  4865846 ctacatatattatgcaatgtccctaccaactgagttaagctaacg 4865890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 338
Target Start/End: Complemental strand, 30895374 - 30895330
Alignment:
Q  294 catattttatgtaatgtctttaccaactgagttaagctaacgaga 338  Q
    ||||||||||||| ||||  |||||||||||||||||| ||||||    
T  30895374 catattttatgtattgtccataccaactgagttaagctcacgaga 30895330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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