View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12104_high_1_N (Length: 385)
Name: NF12104_high_1_N
Description: NF12104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12104_high_1_N |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 56 - 286
Target Start/End: Original strand, 40314727 - 40314957
Alignment:
| Q |
56 |
aaagaaatattgtacttgctgctatttggccgctttatggaagtcctttctccttggtattttcatttcgatattaaaatgagttctttcaatttctaga |
155 |
Q |
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| T |
40314727 |
aaagaaatattgtacttgctgctatttggccgctttatggaagtcctttctccttggtattttcatttcgatattaaaatgagttctttcaatttctaga |
40314826 |
T |
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| Q |
156 |
ccatgaggcataaagtacaatcatgtgctatcaataagtaatgcatctaaaggtacaatcaaatatcaactatacagtcacattgttcctaataagtatc |
255 |
Q |
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| T |
40314827 |
gcatgaggcataaagtacaatcatgtgctatcaataagtaatgcatctaaaggtacaatcaaatatcaactatacagtcacattgttcctaataagtatc |
40314926 |
T |
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| Q |
256 |
tcattcaagaatctattttacccatgtattg |
286 |
Q |
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| T |
40314927 |
tcattcaagaatctattttacccatgtattg |
40314957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 299 - 373
Target Start/End: Original strand, 40315018 - 40315092
Alignment:
| Q |
299 |
acaacatttgatactttctctaacaacagaagaatgccgacgtgctccttaagtttgttttatgaactttccctt |
373 |
Q |
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| T |
40315018 |
acaacatttgatactttctctaacaacagaagaatgccgacgtgctccttaagtttgttttatgaactttccctt |
40315092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 35
Target Start/End: Original strand, 40314685 - 40314716
Alignment:
| Q |
4 |
atattgctgcatttcttgagttgtacttgctg |
35 |
Q |
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| T |
40314685 |
atattgctgcatttcttgagttgtacttgctg |
40314716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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