View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12104_high_2 (Length: 369)
Name: NF12104_high_2
Description: NF12104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12104_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 4 - 367
Target Start/End: Original strand, 40565706 - 40566069
Alignment:
| Q |
4 |
tagtaattgcaatgtctctaagcatgctagcttttgataatgtttaattaatttcattttgctaacacaggtgtgcattctgagttctgacctattctac |
103 |
Q |
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| T |
40565706 |
tagtaattgcaatgtctctaagcatgctagcttttgataatgtttaattaatttcattttgctaacacaggtgtgcattctgagttctgacctattctac |
40565805 |
T |
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| Q |
104 |
ttttaaaacttaaacaactgattagagacattgcaatcactgttaccaaaaactaaagttacattataataaatgttagacaaaaccgtgtttaatttga |
203 |
Q |
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| T |
40565806 |
ttttaaaacttaaacaactgattagagacattgcaatcactgttaccaaaaactaaagttacattataataaatgttagacaaaaccgtgtttaatttga |
40565905 |
T |
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| Q |
204 |
tcattccattccatacaggaaaattcaatcattttgacttttctattattaaggttacaaggagaataaataaatactaaacaaaatctaaggatttgta |
303 |
Q |
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| T |
40565906 |
tcattccattccatacaggaaaattcaatcattttgacttttctattattaaggttacaaggagaataaataaatactaaacaaaatctaaggatttgta |
40566005 |
T |
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| Q |
304 |
taccgatgaacctgnnnnnnntagcaaagccatggctgtgcactcaaaacaattgctgctgatg |
367 |
Q |
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| T |
40566006 |
taccgatgaacctgaaaaaaatagcaaagccatggctgtgcactcaaaacaattgctgctgatg |
40566069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 91 - 255
Target Start/End: Original strand, 40570490 - 40570650
Alignment:
| Q |
91 |
tgacctattctacttttaaaacttaaacaactgattagagacattgcaatcactgttaccaaaaactaaagttacattataataaatgttagacaaaacc |
190 |
Q |
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| T |
40570490 |
tgacctgttctacctttaaatcttaaacaactagttagaaacgttgcaatcactgttgccaaaaactaaagttacattaaaataaatattagac-agacc |
40570588 |
T |
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| Q |
191 |
gtgtttaatttgatcattccattccatacaggaaaattcaatcattttgacttttctattattaa |
255 |
Q |
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| T |
40570589 |
at-cttaatttgatcattcgattccgt--aggaaaaatcagtcattttgatttttctatttttaa |
40570650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 40595253 - 40595321
Alignment:
| Q |
179 |
ttagacaaaaccgtgtttaatttgatcattccattccatacaggaaaattcaatcattttgacttttct |
247 |
Q |
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| T |
40595253 |
ttagacaaaaccatgtttaatttcatcattccaatctgtacaacaaaaatcattcattttgacttttct |
40595321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 8490224 - 8490271
Alignment:
| Q |
130 |
gacattgcaatcactgttaccaaaaactaaagttacattataataaat |
177 |
Q |
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| T |
8490224 |
gacattgcaatcactgttgccaaaaactaaagttacattataataaat |
8490271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 255
Target Start/End: Original strand, 8490288 - 8490376
Alignment:
| Q |
164 |
acattataataaatgttagacaaaaccgtgtttaatttgatcattccattccatacaggaaaattcaatcattttgacttttctattattaa |
255 |
Q |
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| T |
8490288 |
acattataataaataatagacaaaaccatctt-aatttgatcattcaattccata--ggaaaaatcagtcattttgacttttctatttttaa |
8490376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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