View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12104_low_1 (Length: 532)
Name: NF12104_low_1
Description: NF12104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12104_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 398
Target Start/End: Complemental strand, 2018012 - 2017625
Alignment:
| Q |
18 |
gctttttgacaacagtgttactaaatggtggtcttggcaccaccatggcgggcatttgtgaaggaatgcccatcatcgcagtgccatagactgcaatggc |
117 |
Q |
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| T |
2018012 |
gctttttgacaacagtgttactaaatggtggtcgtggcaccaccatggcgggcatttgggaaggaatgcccatcatcgcagtgtcataggctgcaatggc |
2017913 |
T |
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| Q |
118 |
gtgtttgtatagatgatttttaaccatcggctatattc-------cgccttagacaacattgaatgacaacactttgtcacaaaactcacatttcatccc |
210 |
Q |
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| T |
2017912 |
gtgtttgtatagaggatttttaaccatcggctatattctgccatccgccatagacaacattgattgacaacactttgtcacaaaactcacatttcatccc |
2017813 |
T |
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| Q |
211 |
taaattacgaaattatttgttcatcaaatattaacattttgtatctcaaaatataacaaaaacattctcagttccaacacannnnnnnnnccattcacat |
310 |
Q |
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| T |
2017812 |
taaattacgaaattatttcttcctcaaatattaacattttgtatctcaaaatataacaaaaacattctcagttccaacactttttttttttcattcacat |
2017713 |
T |
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| Q |
311 |
tccgcgaaatcaatggttgatgatgatgatctgcctcgacgagattaatatggtgcatgcatgcattttgttaagaacgcttattgtg |
398 |
Q |
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| T |
2017712 |
tccgcgaaatcaatggttgatgatgatgatctgccgcgacgcgattaatatggtgcatgcatgcattttgttaagaacgcttattgtg |
2017625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 393 - 518
Target Start/End: Complemental strand, 2017324 - 2017189
Alignment:
| Q |
393 |
attgtggccgcaatttgcggtggaattgaatccgaaaaaatgatagagaataacctggatggagagttcttggcggccgatgatcaa----------ctc |
482 |
Q |
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| T |
2017324 |
attgtgcccgcaatttgcggtggaattgaatccgaaaaaatgatagacaataacctggatggagagttcttggcgtccgatgatcaactacgtcgtgctc |
2017225 |
T |
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| Q |
483 |
cggcgacgtttttaggaaagttgagttctgtgctgc |
518 |
Q |
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| T |
2017224 |
cggcgacgttttcagggaagttgagttctgtgctgc |
2017189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 2020510 - 2020460
Alignment:
| Q |
18 |
gctttttgacaacagtgttactaaatggtggtcttggcaccaccatggcgg |
68 |
Q |
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| T |
2020510 |
gctttttgacagcagtgttactaaatggtggtcatggcaccaccatggcgg |
2020460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 71 - 159
Target Start/End: Complemental strand, 2020434 - 2020346
Alignment:
| Q |
71 |
atttgtgaaggaatgcccatcatcgcagtgccatagactgcaatggcgtgtttgtatagatgatttttaaccatcggctatattccgcc |
159 |
Q |
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| T |
2020434 |
atttgtgaaggaatgcctgtcgtcacggtgccataggctgcaatggcttgtttatatagcggatttttaaccatcagctatactccgcc |
2020346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 280
Target Start/End: Complemental strand, 2020161 - 2020115
Alignment:
| Q |
234 |
tcaaatattaacattttgtatctcaaaatataacaaaaacattctca |
280 |
Q |
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| T |
2020161 |
tcaaatattaacattttttaccccaaaatataacaaaaacattctca |
2020115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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