View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12105_high_1 (Length: 754)
Name: NF12105_high_1
Description: NF12105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12105_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 147 - 620
Target Start/End: Complemental strand, 2018104 - 2017625
Alignment:
| Q |
147 |
attatataatacgaatatgtataaatcatctaaaatcaatgttatcaatcataaatccctttacgctgcactgccatagcgccactataacccgcttttt |
246 |
Q |
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| T |
2018104 |
attatataacacaaatatgtataaatcatctaaaatcaatgttatcaatcacaaatccctttacgctgcactgtcatagcgccactataacc-gcttttt |
2018006 |
T |
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| Q |
247 |
gacaacagtgttactaaatggtggtcttggcaccaccatggcgggcatttgtgaaggaatgcccatcatcgcagtgccatagactgcaatggcgtgtttg |
346 |
Q |
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| T |
2018005 |
gacaacagtgttactaaatggtggtcgtggcaccaccatggcgggcatttgggaaggaatgcccatcatcgcagtgtcataggctgcaatggcgtgtttg |
2017906 |
T |
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| Q |
347 |
tatagatgatttttaaccatcggctatat-------tccgccttagacaacattgaatgacaacactttgtcacaaaactcacatttcatccctaaatta |
439 |
Q |
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| T |
2017905 |
tatagaggatttttaaccatcggctatattctgccatccgccatagacaacattgattgacaacactttgtcacaaaactcacatttcatccctaaatta |
2017806 |
T |
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| Q |
440 |
cgaaattatttgttcatcaaatattaacattttgtatctcaaaatataacaaaaacattctcagttccaacacannnnnnnnnccattcacattccgcga |
539 |
Q |
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| T |
2017805 |
cgaaattatttcttcctcaaatattaacattttgtatctcaaaatataacaaaaacattctcagttccaacactttttttttttcattcacattccgcga |
2017706 |
T |
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| Q |
540 |
aatcaatggttgatgatgatgatctgcctcgacgagattaatatggtgcatgcatgcattttgttaagaacgcttattgtg |
620 |
Q |
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| T |
2017705 |
aatcaatggttgatgatgatgatctgccgcgacgcgattaatatggtgcatgcatgcattttgttaagaacgcttattgtg |
2017625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 615 - 740
Target Start/End: Complemental strand, 2017324 - 2017189
Alignment:
| Q |
615 |
attgtggccgcaatttgcggtggaattgaatccgaaaaaatgatagagaataacctggatggagagttcttggcggccgatgatcaa----------ctc |
704 |
Q |
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| T |
2017324 |
attgtgcccgcaatttgcggtggaattgaatccgaaaaaatgatagacaataacctggatggagagttcttggcgtccgatgatcaactacgtcgtgctc |
2017225 |
T |
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| Q |
705 |
cggcgacgtttttaggaaagttgagttctgtgctgc |
740 |
Q |
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| T |
2017224 |
cggcgacgttttcagggaagttgagttctgtgctgc |
2017189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 42 - 131
Target Start/End: Complemental strand, 2035625 - 2035535
Alignment:
| Q |
42 |
aatccatcaaatccaaaatatctgaagcaccagaaaaagaacaattcaatcaaagccaattctg-aaagaaacatgaaagggacatatata |
131 |
Q |
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| T |
2035625 |
aatccatcaaatacgaagtatctgaagcaccagaaaaagaacaatccaatcaaagccaattctgaaaagaaacatgaaagggacatatata |
2035535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 2018245 - 2018177
Alignment:
| Q |
33 |
aatccatcaaatccatcaaatccaaaatatctgaagcaccagaaaaagaacaattcaatcaaagccaat |
101 |
Q |
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| T |
2018245 |
aatccttcgaatccatcaaatccaaagtatctgaagcaccagaaaaagaacattccaatcaaagccaat |
2018177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 2020527 - 2020460
Alignment:
| Q |
222 |
atagcgccactataacccgctttttgacaacagtgttactaaatggtggtcttggcaccaccatggcgg |
290 |
Q |
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| T |
2020527 |
atagtgccactataacc-gctttttgacagcagtgttactaaatggtggtcatggcaccaccatggcgg |
2020460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 2020798 - 2020705
Alignment:
| Q |
42 |
aatccatcaaatccaaaatatctgaagcaccagaaaaagaacaattcaatcaaa-gccaattctgaaa-gaaacatgaaagggacatatatatg |
133 |
Q |
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| T |
2020798 |
aatccattaaatccttagtatctgaaacaccaaaaatagaacaatccaatcaaaagccaattctgaaaagaaacatgaaagggacatatatatg |
2020705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 293 - 381
Target Start/End: Complemental strand, 2020434 - 2020346
Alignment:
| Q |
293 |
atttgtgaaggaatgcccatcatcgcagtgccatagactgcaatggcgtgtttgtatagatgatttttaaccatcggctatattccgcc |
381 |
Q |
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| T |
2020434 |
atttgtgaaggaatgcctgtcgtcacggtgccataggctgcaatggcttgtttatatagcggatttttaaccatcagctatactccgcc |
2020346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 456 - 502
Target Start/End: Complemental strand, 2020161 - 2020115
Alignment:
| Q |
456 |
tcaaatattaacattttgtatctcaaaatataacaaaaacattctca |
502 |
Q |
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| T |
2020161 |
tcaaatattaacattttttaccccaaaatataacaaaaacattctca |
2020115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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