View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12105_high_5 (Length: 253)

Name: NF12105_high_5
Description: NF12105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12105_high_5
NF12105_high_5
[»] chr4 (15 HSPs)
chr4 (57-235)||(26315236-26315419)
chr4 (8-54)||(14210441-14210487)
chr4 (8-54)||(14211410-14211456)
chr4 (8-54)||(14212361-14212407)
chr4 (8-54)||(14213330-14213376)
chr4 (8-54)||(14214298-14214344)
chr4 (8-54)||(14215267-14215313)
chr4 (8-54)||(14218138-14218184)
chr4 (8-54)||(14219108-14219154)
chr4 (8-54)||(14220077-14220123)
chr4 (8-54)||(14221028-14221074)
chr4 (8-54)||(14221997-14222043)
chr4 (8-54)||(14222966-14223012)
chr4 (16-54)||(37619002-37619040)
chr4 (6-54)||(14586858-14586906)
[»] chr1 (3 HSPs)
chr1 (1-58)||(10011983-10012040)
chr1 (6-54)||(29836243-29836291)
chr1 (6-54)||(40981614-40981662)
[»] chr5 (4 HSPs)
chr5 (3-54)||(4077842-4077893)
chr5 (4-54)||(40946714-40946764)
chr5 (3-53)||(16352147-16352197)
chr5 (18-58)||(33553600-33553640)
[»] chr3 (3 HSPs)
chr3 (6-54)||(29129134-29129182)
chr3 (18-54)||(44712575-44712611)
chr3 (3-54)||(52126889-52126940)
[»] chr7 (3 HSPs)
chr7 (3-54)||(24759478-24759529)
chr7 (6-54)||(1971096-1971144)
chr7 (6-51)||(11503211-11503256)
[»] chr8 (2 HSPs)
chr8 (4-54)||(26955416-26955466)
chr8 (3-54)||(38681141-38681192)
[»] chr2 (2 HSPs)
chr2 (5-54)||(26449097-26449146)
chr2 (18-54)||(4768482-4768518)
[»] chr6 (3 HSPs)
chr6 (3-58)||(23073454-23073509)
chr6 (14-54)||(2319908-2319948)
chr6 (18-54)||(8840654-8840690)
[»] scaffold0005 (1 HSPs)
scaffold0005 (6-54)||(230468-230516)


Alignment Details
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 57 - 235
Target Start/End: Original strand, 26315236 - 26315419
Alignment:
Q  57 atcaacagtaaaataatttttcatgttcaaatataaaatagtctcacttcatcactaggcttttgtgaagttccatcccagttctatgaag-cttcatgc 155  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26315236 atcaacagtaaagtaatttttcatattcaaatataaaatagtctcacttcatcactaggcttttgtgaagttccatcccagttctatgaagccttcatgc 26315335  T
Q  156 ttagtcatcaacatta----nnnnnnnngtaattttagctaaatgtgggattaagataggcaaaatgattatgtatgatgaaac 235  Q
    ||||||||||||||||            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26315336 ttagtcatcaacattattttttttttttgtaattttggctaaatgtgggattaagataggcaaaatgattatgtatgatgaaac 26315419  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 14210441 - 14210487
Alignment:
Q  8 agggttttggaattaggataaacatgtttgctaggattagatataaa 54  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14210441 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14210487  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 14211410 - 14211456
Alignment:
Q  8 agggttttggaattaggataaacatgtttgctaggattagatataaa 54  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14211410 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14211456  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 14212361 - 14212407
Alignment:
Q  8 agggttttggaattaggataaacatgtttgctaggattagatataaa 54  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14212361 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14212407  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 14213330 - 14213376
Alignment:
Q  8 agggttttggaattaggataaacatgtttgctaggattagatataaa 54  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14213330 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14213376  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 14214298 - 14214344
Alignment:
Q  8 agggttttggaattaggataaacatgtttgctaggattagatataaa 54  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14214298 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14214344  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 14215267 - 14215313
Alignment:
Q  8 agggttttggaattaggataaacatgtttgctaggattagatataaa 54  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14215267 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14215313  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 14218138 - 14218184
Alignment:
Q  8 agggttttggaattaggataaacatgtttgctaggattagatataaa 54  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14218138 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14218184  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 14219108 - 14219154
Alignment:
Q  8 agggttttggaattaggataaacatgtttgctaggattagatataaa 54  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14219108 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14219154  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 14220077 - 14220123
Alignment:
Q  8 agggttttggaattaggataaacatgtttgctaggattagatataaa 54  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14220077 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14220123  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 14221028 - 14221074
Alignment:
Q  8 agggttttggaattaggataaacatgtttgctaggattagatataaa 54  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14221028 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14221074  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 14221997 - 14222043
Alignment:
Q  8 agggttttggaattaggataaacatgtttgctaggattagatataaa 54  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14221997 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14222043  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 14222966 - 14223012
Alignment:
Q  8 agggttttggaattaggataaacatgtttgctaggattagatataaa 54  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14222966 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14223012  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 37619002 - 37619040
Alignment:
Q  16 ggaattaggataaacatgtttgctaggattagatataaa 54  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  37619002 ggaattagggtaagcatgtttgctaggattagatataaa 37619040  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 14586858 - 14586906
Alignment:
Q  6 ttagggttttggaattaggataaacatgtttgctaggattagatataaa 54  Q
    |||||||| || |||||||||   |||||||||||||||||||||||||    
T  14586858 ttagggttatgcaattaggatttgcatgtttgctaggattagatataaa 14586906  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 10011983 - 10012040
Alignment:
Q  1 ttggattagggttttggaattaggataaacatgtttgctaggattagatataaaagat 58  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||    
T  10011983 ttggattagggttttggaattagggtaagcatgtttgctaggattaaatataaaagat 10012040  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 29836291 - 29836243
Alignment:
Q  6 ttagggttttggaattaggataaacatgtttgctaggattagatataaa 54  Q
    ||||||||| | ||||||| |||||||||||||||||||||||||||||    
T  29836291 ttagggtttggcaattagggtaaacatgtttgctaggattagatataaa 29836243  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 40981614 - 40981662
Alignment:
Q  6 ttagggttttggaattaggataaacatgtttgctaggattagatataaa 54  Q
    ||||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  40981614 ttagggtttggaaattagggtaagcatgtttgctaggattagatataaa 40981662  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 4077893 - 4077842
Alignment:
Q  3 ggattagggttttggaattaggataaacatgtttgctaggattagatataaa 54  Q
    |||||||||||| | ||||||||||| |||||||||||||||||||||||||    
T  4077893 ggattagggtttggcaattaggataagcatgtttgctaggattagatataaa 4077842  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 40946764 - 40946714
Alignment:
Q  4 gattagggttttggaattaggataaacatgtttgctaggattagatataaa 54  Q
    ||||||||||| | ||||||| |||||||||||||||||||||||||||||    
T  40946764 gattagggtttggcaattagggtaaacatgtttgctaggattagatataaa 40946714  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 16352147 - 16352197
Alignment:
Q  3 ggattagggttttggaattaggataaacatgtttgctaggattagatataa 53  Q
    |||||||||||| | ||||||| ||| ||||||||||||||||||||||||    
T  16352147 ggattagggtttggcaattagggtaagcatgtttgctaggattagatataa 16352197  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 33553640 - 33553600
Alignment:
Q  18 aattaggataaacatgtttgctaggattagatataaaagat 58  Q
    ||||||||||| ||| |||||||||||||||||||||||||    
T  33553640 aattaggataagcatatttgctaggattagatataaaagat 33553600  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 29129182 - 29129134
Alignment:
Q  6 ttagggttttggaattaggataaacatgtttgctaggattagatataaa 54  Q
    ||||||||| | ||||||| |||||||||||||||||||||||||||||    
T  29129182 ttagggtttggcaattagggtaaacatgtttgctaggattagatataaa 29129134  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 44712575 - 44712611
Alignment:
Q  18 aattaggataaacatgtttgctaggattagatataaa 54  Q
    ||||||||||||||||||||||||||||| |||||||    
T  44712575 aattaggataaacatgtttgctaggattatatataaa 44712611  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 52126940 - 52126889
Alignment:
Q  3 ggattagggttttggaattaggataaacatgtttgctaggattagatataaa 54  Q
    |||||||||||  | ||||||| ||| |||||||||||||||||||||||||    
T  52126940 ggattagggttaagaaattagggtaagcatgtttgctaggattagatataaa 52126889  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 24759529 - 24759478
Alignment:
Q  3 ggattagggttttggaattaggataaacatgtttgctaggattagatataaa 54  Q
    |||||||||||  | ||||||| |||||||||||||||||||||||||||||    
T  24759529 ggattagggttaagaaattagggtaaacatgtttgctaggattagatataaa 24759478  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 1971144 - 1971096
Alignment:
Q  6 ttagggttttggaattaggataaacatgtttgctaggattagatataaa 54  Q
    ||||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  1971144 ttagggtttggaaattagggtaagcatgtttgctaggattagatataaa 1971096  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 11503256 - 11503211
Alignment:
Q  6 ttagggttttggaattaggataaacatgtttgctaggattagatat 51  Q
    ||||||||| | |||||||||||| ||||||| |||||||||||||    
T  11503256 ttagggtttcgcaattaggataaatatgtttggtaggattagatat 11503211  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 26955466 - 26955416
Alignment:
Q  4 gattagggttttggaattaggataaacatgtttgctaggattagatataaa 54  Q
    ||||||||||| | ||||||| |||||||||||||||| ||||||||||||    
T  26955466 gattagggtttggcaattagggtaaacatgtttgctagaattagatataaa 26955416  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 38681192 - 38681141
Alignment:
Q  3 ggattagggttttggaattaggataaacatgtttgctaggattagatataaa 54  Q
    |||||||||||| | || |||| ||| |||||||||||||||||||||||||    
T  38681192 ggattagggtttagcaaatagggtaagcatgtttgctaggattagatataaa 38681141  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 26449146 - 26449097
Alignment:
Q  5 attagggttttggaattaggataaacatgtttgctaggattagatataaa 54  Q
    |||||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  26449146 attagggtttggcaattagggtaagcatgtttgctaggattagatataaa 26449097  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 4768518 - 4768482
Alignment:
Q  18 aattaggataaacatgtttgctaggattagatataaa 54  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  4768518 aattaggataagcatgtttgctaagattagatataaa 4768482  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 23073454 - 23073509
Alignment:
Q  3 ggattagggttttggaattaggataaacatgtttgctaggattagatataaaagat 58  Q
    ||||||||||||   ||||||| ||| ||||||||| |||||||||||||||||||    
T  23073454 ggattagggtttgacaattagggtaagcatgtttgcaaggattagatataaaagat 23073509  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 2319948 - 2319908
Alignment:
Q  14 ttggaattaggataaacatgtttgctaggattagatataaa 54  Q
    ||||||||||| ||||||| |||| ||||||||||||||||    
T  2319948 ttggaattagggtaaacatatttgttaggattagatataaa 2319908  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 8840690 - 8840654
Alignment:
Q  18 aattaggataaacatgtttgctaggattagatataaa 54  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  8840690 aattagggtaagcatgtttgctaggattagatataaa 8840654  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 230516 - 230468
Alignment:
Q  6 ttagggttttggaattaggataaacatgtttgctaggattagatataaa 54  Q
    |||||||| || |||||||||   |||||||||||||||||||||||||    
T  230516 ttagggttatgcaattaggatttgcatgtttgctaggattagatataaa 230468  T

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