View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12105_low_2 (Length: 380)
Name: NF12105_low_2
Description: NF12105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12105_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 375
Target Start/End: Complemental strand, 24724425 - 24724068
Alignment:
| Q |
18 |
gtatcaaccttgaaggttgacataaactgtatagtgctcatccctgaagttgaacagtggctctaaaagaaaattctgatttgcacctttagccacaaag |
117 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24724425 |
gtatcaaccttgaaggttgaaataaactgtatagtgctcatccctgaagttgaacagtggctctaaaagaaaattctgatttgcacctttagccacaaag |
24724326 |
T |
|
| Q |
118 |
ctgattggattgtattgccttaatcctttccctgaaacaaaactagttgcttggttaaaactagtttcagaagcagacttgcacacaagcttaactcctg |
217 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24724325 |
ctgataggattgtattgccttaatcctttccctgaaacaaaactatttgcttggttaaaactagtttcagaagcagacttgcacacaagcttaactcctg |
24724226 |
T |
|
| Q |
218 |
aaccagcactcatatcgctatgcacgtaacaatctttattgctttgtgattctaaagatattgtttgatttcgtccatccaagcccggtaccacaagaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24724225 |
aaccagcactcatatcgctatgcacgtaacaatctttattgctttgtgattctaaagatattgtttgatttcgtccatccaagcccggtaccacaagaaa |
24724126 |
T |
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| Q |
318 |
aaccgaagaaggcccaccatgggaagaatctacaatgataagaggtttctctgctcct |
375 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24724125 |
aaccgaagaaggcccgccatgggaagaatctacaatgataagaggtttctctggtcct |
24724068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 368
Target Start/End: Complemental strand, 24733137 - 24732787
Alignment:
| Q |
18 |
gtatcaaccttgaaggttgacataaactgtatagtgctcatccctgaagttgaacagtggctctaaaagaaaattctgatttgcacctttagccacaaag |
117 |
Q |
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||||||| |||||| |||| |||||||||||| ||||||||||| |||||||||| ||| ||||||||||||||||| |||||||||||||| |||||| |
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| T |
24733137 |
gtatcaatcttgaatattgaaataaactgtataatgctcatccctaaagttgaacaatgggtctaaaagaaaattctggtttgcacctttagcaacaaag |
24733038 |
T |
|
| Q |
118 |
ctgattggattgtattgccttaatcctttccctgaaacaaaactagttgcttggttaaaactagtttcagaagcagacttgcacacaagcttaactcctg |
217 |
Q |
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||||| |||| |||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||| |
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| T |
24733037 |
ctgataggatggtattgccttaatcctttgccggaaacaaaactagttgcttggttaaaactagcttcagaagcagtcttgcaccttagcttaactcctg |
24732938 |
T |
|
| Q |
218 |
aaccagcactcatatcgctatgcacgtaacaatctttattgctttgtgattctaaagatattgtttgatttcgtccatccaagcccggtaccacaagaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
24732937 |
aaccagcactcatatcgctatgcacgtaacaatctttattgctttgtgattctaaagatattgtttgatttcgtccatccaatcctggtaccacaagaaa |
24732838 |
T |
|
| Q |
318 |
aaccgaagaaggcccaccatgggaagaatctacaatgataagaggtttctc |
368 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
24732837 |
aaccgatgaaggccccccatgggaagaatctacaatgataagaggtttctc |
24732787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 24693688 - 24693342
Alignment:
| Q |
18 |
gtatcaaccttgaaggttgacataaactgtatagtgctcatccctgaagttgaacagtggctctaaaagaaaattctgatttgcacctttagccacaaag |
117 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||| ||| | ||||||||||||||| |
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| T |
24693688 |
gtatcaaccttgaatgttgaaataaactgtatagtgttcatccctaaagttgaacaatggctctaaaagaaaattctggtttcctcctttagccacaaag |
24693589 |
T |
|
| Q |
118 |
ctgattggattgtattgccttaatcctttccctgaaacaaaactagttgcttggttaaaactagtttcagaagcagacttgcacacaagcttaactcctg |
217 |
Q |
| |
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||||| |||| ||||||||||||||||||||| ||||| ||||| | ||||||||||||||||| ||||||| ||||||||||| ||||||||||||| |
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| T |
24693588 |
ctgataggatggtattgccttaatcctttcccggaaacgaaacttgctgcttggttaaaactagcttcagaatcagacttgcaccttagcttaactcctg |
24693489 |
T |
|
| Q |
218 |
aaccagcactcatatcgctatgcacgtaacaatctttattgctttgtgattctaaagatattgtttgatttcgtccatccaagcccggtaccacaagaaa |
317 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
24693488 |
aaccagagctcatatcgctatacacgtaacaatctttattgctttgtgattgtaaagatattgtttgatttcgtccatccaagcctggtaccacaagaaa |
24693389 |
T |
|
| Q |
318 |
aaccgaagaaggcccaccatgggaagaatctacaatgataagaggtt |
364 |
Q |
| |
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||| ||||||||||| ||| |||| |||||||||| |||||||||| |
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| T |
24693388 |
aactgaagaaggcccgccaagggaggaatctacaacaataagaggtt |
24693342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 24748305 - 24748047
Alignment:
| Q |
18 |
gtatcaaccttgaaggttgacataaactgtatagtgctcatccctgaagttgaacagtggctctaaaagaaaattctgatttgcacctttagccacaaag |
117 |
Q |
| |
|
||||||| |||||| |||| ||||| |||||||| ||||||||| |||||||||| ||||||||||| ||||||||| ||||| |||||||||| ||| |
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| T |
24748305 |
gtatcaatcttgaatattgaaataaattgtatagttctcatccctaaagttgaacaatggctctaaaataaaattctggtttgctcctttagccaaaaaa |
24748206 |
T |
|
| Q |
118 |
ctgattggattgtattgccttaatcctttccctgaaacaaaactagttgcttggttaaaactagtttcagaagcagacttgcacacaagcttaactcctg |
217 |
Q |
| |
|
||| | |||| ||||||||||||||||||||| ||||| ||||| ||| ||||||||||||| | |||||| |||||||||| |||||||||| || |
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| T |
24748205 |
ctggtaggatggtattgccttaatcctttcccggaaacgaaacttgtttcttggttaaaacttgcttcagatccagacttgcatctgagcttaactcttg |
24748106 |
T |
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| Q |
218 |
aaccagcactcatatcgctatgcacgtaacaatctttattgctttgtgattctaaagat |
276 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24748105 |
aaccagcgctcatatcactatgcacgtaacaatctttattgctttgtgattctaaagat |
24748047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 24706882 - 24706799
Alignment:
| Q |
40 |
taaactgtatagtgctcatccctgaagttgaacagtggctct-aaaagaaaattctgatttgcacctttagccacaaagctgat |
122 |
Q |
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|||||||||| |||||||| | ||||||| |||| ||||||| ||||||||||| || ||| | ||||||||||||||| |||| |
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| T |
24706882 |
taaactgtattgtgctcattcttgaagttaaacaatggctctaaaaagaaaattatggtttcctcctttagccacaaagttgat |
24706799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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