View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12105_low_3 (Length: 346)

Name: NF12105_low_3
Description: NF12105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12105_low_3
NF12105_low_3
[»] chr4 (7 HSPs)
chr4 (18-324)||(28071162-28071474)
chr4 (132-258)||(2035238-2035364)
chr4 (18-227)||(50063783-50063981)
chr4 (131-283)||(25536838-25536984)
chr4 (131-265)||(25516651-25516779)
chr4 (272-324)||(50063978-50064029)
chr4 (93-121)||(2035382-2035410)
[»] chr8 (14 HSPs)
chr8 (18-238)||(7839836-7840055)
chr8 (75-250)||(11676434-11676609)
chr8 (145-269)||(13958504-13958628)
chr8 (18-121)||(29668786-29668890)
chr8 (133-220)||(30735779-30735866)
chr8 (190-269)||(990116-990195)
chr8 (175-250)||(11668232-11668307)
chr8 (18-80)||(30735929-30735991)
chr8 (177-227)||(29668925-29668975)
chr8 (66-121)||(990210-990265)
chr8 (75-121)||(11668172-11668218)
chr8 (22-80)||(11676309-11676367)
chr8 (272-324)||(29668972-29669023)
chr8 (22-80)||(11668026-11668084)
[»] chr3 (16 HSPs)
chr3 (20-310)||(27221447-27221722)
chr3 (18-268)||(35127000-35127235)
chr3 (190-310)||(37921748-37921867)
chr3 (167-268)||(2545189-2545290)
chr3 (193-269)||(9308801-9308877)
chr3 (193-310)||(46278805-46278927)
chr3 (190-269)||(36430159-36430237)
chr3 (145-220)||(9291948-9292023)
chr3 (47-101)||(9291904-9291958)
chr3 (18-80)||(2545013-2545075)
chr3 (18-80)||(46278554-46278616)
chr3 (18-76)||(36430039-36430097)
chr3 (75-121)||(46278663-46278709)
chr3 (75-121)||(2545103-2545150)
chr3 (88-121)||(37921915-37921948)
chr3 (93-121)||(36430092-36430120)
[»] chr6 (9 HSPs)
chr6 (75-310)||(9639-9875)
chr6 (75-310)||(12365-12601)
chr6 (47-172)||(30641512-30641636)
chr6 (167-269)||(3185837-3185939)
chr6 (18-80)||(12626-12688)
chr6 (18-80)||(17661-17723)
chr6 (34-80)||(9900-9946)
chr6 (193-238)||(30641468-30641513)
chr6 (75-121)||(17589-17636)
[»] chr5 (7 HSPs)
chr5 (93-321)||(2643424-2643636)
chr5 (174-269)||(11016216-11016311)
chr5 (18-80)||(11016036-11016098)
chr5 (18-76)||(2643631-2643689)
chr5 (18-72)||(2315886-2315940)
chr5 (161-208)||(14435405-14435452)
chr5 (205-238)||(14435290-14435323)
[»] chr1 (10 HSPs)
chr1 (196-324)||(23552328-23552455)
chr1 (75-216)||(35754160-35754300)
chr1 (243-323)||(35754296-35754375)
chr1 (18-80)||(35754060-35754122)
chr1 (18-80)||(23552464-23552526)
chr1 (75-121)||(32060440-32060486)
chr1 (18-78)||(32060515-32060575)
chr1 (22-76)||(8081937-8081991)
chr1 (190-227)||(8082029-8082066)
chr1 (93-121)||(8081986-8082014)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 28071474 - 28071162
Alignment:
Q  18 atcagcagccacagcgaccgtttttggaccttttcacgtcgagaacaaaaatcacaggaaaattcagaaatttgaacaggagaaaaggaatcgaatctca 117  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28071474 atcagcagccaccgtgaccgtttttggaccttttcacgtcgagaacaaaaatcacaggaaaattcagaaatttgaacaggagaaaaggaatcgaatctca 28071375  T
Q  118 tattnnnnnnnnn------gcacaagaatacaagaacaggagaagaaggaatctaaatcttgtcttttttacacaaaccaattacttacttctcttcctg 211  Q
    ||||               ||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||  |||||||||||||||||||||    
T  28071374 tattaaaaaaaaaaaaaaagcacaagaatacaagaacaggagaagaaggaatctgaatcttatcttttttgcacaaatgaattacttacttctcttcctg 28071275  T
Q  212 cttgcgatttgcgattctggtgttgccagttcttgcttcattctctttgttcaggtttaagatttcagtttgttcctgcttgcttgccgtttgtgatttg 311  Q
    |||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28071274 cttgcgatttgcgattctggtgttgccgtttcttgcttcattctatttgttcaggtttaagatttcagtttgttcctgcttgcttgccgtttgtgatttg 28071175  T
Q  312 cgattttgttgtg 324  Q
    |||||||||||||    
T  28071174 cgattttgttgtg 28071162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 132 - 258
Target Start/End: Complemental strand, 2035364 - 2035238
Alignment:
Q  132 cacaagaatacaagaacaggagaagaaggaatctaaatcttgtcttttttacacaaaccaattacttacttctcttcctgcttgcgatttgcgattctgg 231  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2035364 cacaagaatacaagaacaggagaagaaggaatctgaatcttatcttttttacacaaatcaattacttacttctcttcctgcttgcgatttgcgattctgg 2035265  T
Q  232 tgttgccagttcttgcttcattctctt 258  Q
    |||||||  ||||||||||| ||||||    
T  2035264 tgttgccgtttcttgcttcactctctt 2035238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 50063783 - 50063981
Alignment:
Q  18 atcagcagccacagcgaccgtttttggaccttttcacgtcgagaacaaaaatcacaggaaaattcagaaattt-gaacaggagaaaaggaatcgaatctc 116  Q
    |||||||||||| |  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  50063783 atcagcagccaccgtcaccgtttttggaccttttcacgccgagaacaaaaatcacaggaaaattcagaaattttgaacaggagaaaaggaatcgaatctc 50063882  T
Q  117 atattnnnnnnnnngcacaagaat-acaagaacaggagaagaaggaatctaaatcttgtcttttttacacaaaccaattacttacttctcttcctgcttg 215  Q
    |||||           | | |||| ||||||||||||||||||||||||| |||||| ||||||||||             |||||||||||||||||||    
T  50063883 atattcatatttaaaaaaaggaatcacaagaacaggagaagaaggaatctgaatcttatcttttttac-------------ttacttctcttcctgcttg 50063969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 131 - 283
Target Start/End: Original strand, 25536838 - 25536984
Alignment:
Q  131 gcacaagaatacaagaacaggagaagaaggaatctaaatcttgtcttttttacacaaaccaattacttacttctcttcctgcttgc-------gatttgc 223  Q
    ||||||||||| ||||||||||||||||||||||| |||||| ||||||||||             ||||||||||||||||||||       |||||||    
T  25536838 gcacaagaatataagaacaggagaagaaggaatctgaatcttatcttttttac-------------ttacttctcttcctgcttgcgatttgcgatttgc 25536924  T
Q  224 gattctggtgttgccagttcttgcttcattctctttgttcaggtttaagatttcagtttg 283  Q
    |||||||||||||||  ||||||||||| ||||||| ||||| |||  ||||||||||||    
T  25536925 gattctggtgttgccgtttcttgcttcactctctttcttcagctttgcgatttcagtttg 25536984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 131 - 265
Target Start/End: Complemental strand, 25516779 - 25516651
Alignment:
Q  131 gcacaagaatacaagaacaggagaagaaggaatctaaatcttgtcttttttacacaaaccaattacttacttctcttcctgc-------ttgcgatttgc 223  Q
    ||||||||||| ||||||||||||||||||||||| |||||| ||||||             ||||||||||||||||||||       |||||||||||    
T  25516779 gcacaagaatataagaacaggagaagaaggaatctgaatcttatctttt-------------ttacttacttctcttcctgcttgcgatttgcgatttgc 25516693  T
Q  224 gattctggtgttgccagttcttgcttcattctctttgttcag 265  Q
    |||||||||||||||  ||||||||||| ||||||| |||||    
T  25516692 gattctggtgttgccgtttcttgcttcactctctttcttcag 25516651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 272 - 324
Target Start/End: Original strand, 50063978 - 50064029
Alignment:
Q  272 gatttcagtttgttcctgcttgcttgccgtttgtgatttgcgattttgttgtg 324  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  50063978 gatttcagtttgttcctgct-gcttgccgtttgcgatttgcgattttgttgtg 50064029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 121
Target Start/End: Complemental strand, 2035410 - 2035382
Alignment:
Q  93 acaggagaaaaggaatcgaatctcatatt 121  Q
    |||||||||||||||||||||||||||||    
T  2035410 acaggagaaaaggaatcgaatctcatatt 2035382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 7840055 - 7839836
Alignment:
Q  18 atcagcagccacagcgaccgtttttggaccttttcacgtcgagaacaaaaatcacaggaaaattcagaaatttgaacaggagaaaaggaatcgaatctca 117  Q
    |||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7840055 atcagcagccaccgtgaccgtttttggaccttttcaggtcgagaacaaaaatcacaggaaaattcagaaatttgaacaggagaaaaggaaacgaatctca 7839956  T
Q  118 tattnnnnnnnnngcacaagaatacaagaacaggagaagaaggaatctaaatcttgtcttttttacacaaaccaattacttacttctcttcctgcttgcg 217  Q
    ||||         ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  7839955 tattaaaaaaaa-gcacaagaatacaagaacaggagaagaaggaatctgaatcttatcttttttacacaaaccaattacttacttctgttcctgcttgcg 7839857  T
Q  218 atttgcgattctggtgttgcc 238  Q
    |||||||| ||||||||||||    
T  7839856 atttgcgactctggtgttgcc 7839836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 75 - 250
Target Start/End: Original strand, 11676434 - 11676609
Alignment:
Q  75 gaaaattcagaaatttgaacaggagaaaaggaatcgaatctcatattnnnnnnnnngcacaagaatacaagaacaggagaagaaggaatctaaatcttgt 174  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||| |||||| |    
T  11676434 gaaaattcagtaatttgaacaggagaaaaggaatcgaatctcatattaaaaaaaaagcacaagaatacaagaacaggagaagaaggaatctgaatcttat 11676533  T
Q  175 cttttttacacaaaccaattacttacttctcttcctgcttgcgatttgcgattctggtgttgccagttcttgcttc 250  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  11676534 cttttttacacaaatgaattacttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttcttgcttc 11676609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 145 - 269
Target Start/End: Original strand, 13958504 - 13958628
Alignment:
Q  145 gaacaggagaagaaggaatctaaatcttgtcttttttacacaaaccaattacttacttctcttcctgcttgcgatttgcgattctggtgttgccagttct 244  Q
    ||||||| ||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  13958504 gaacaggggaagaaggaatctgaatcttatcttttttacacaaatcaattacttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttct 13958603  T
Q  245 tgcttcattctctttgttcaggttt 269  Q
    ||||||||||||||| |||||||||    
T  13958604 tgcttcattctctttcttcaggttt 13958628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 29668786 - 29668890
Alignment:
Q  18 atcagcagccacagcgaccgtttttggaccttttcacgtcgagaacaaaaatcacaggaaaattcagaaa-tttgaacaggagaaaaggaatcgaatctc 116  Q
    |||||||||||| | |||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29668786 atcagcagccaccgtgaccgtttttcgaccttttcacgccgagaacaaaaatcacaggaaaattcagaaattttgaacaggagaaaaggaatcgaatctc 29668885  T
Q  117 atatt 121  Q
    |||||    
T  29668886 atatt 29668890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 133 - 220
Target Start/End: Complemental strand, 30735866 - 30735779
Alignment:
Q  133 acaagaatacaagaacaggagaagaaggaatctaaatcttgtcttttttacacaaaccaattacttacttctcttcctgcttgcgatt 220  Q
    |||||||||||| |||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  30735866 acaagaatacaacaacaggagaagaaggaatctgaatcttatcttttttacacaaatcaattacttacttctcttcctgcttgcgatt 30735779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 190 - 269
Target Start/End: Complemental strand, 990195 - 990116
Alignment:
Q  190 caattacttacttctcttcctgcttgcgatttgcgattctggtgttgccagttcttgcttcattctctttgttcaggttt 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||| |||||||||    
T  990195 caattacttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttcttgcttcactctctttcttcaggttt 990116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 11668232 - 11668307
Alignment:
Q  175 cttttttacacaaaccaattacttacttctcttcctgcttgcgatttgcgattctggtgttgccagttcttgcttc 250  Q
    ||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||    
T  11668232 cttttttacacaaatgaattacttacttctcttcctgcttgcgacttgcgattctggtgttgccgtttcttgcttc 11668307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 30735991 - 30735929
Alignment:
Q  18 atcagcagccacagcgaccgtttttggaccttttcacgtcgagaacaaaaatcacaggaaaat 80  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30735991 atcagcagccaccgtgaccgtttttggaccttttcacgtcgagaacaaaaatcacaggaaaat 30735929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 29668925 - 29668975
Alignment:
Q  177 tttttacacaaaccaattacttacttctcttcctgcttgcgatttgcgatt 227  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29668925 tttttacacaaatcaattacttacttctcttcctgcttgcgatttgcgatt 29668975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 66 - 121
Target Start/End: Complemental strand, 990265 - 990210
Alignment:
Q  66 aaatcacaggaaaattcagaaatttgaacaggagaaaaggaatcgaatctcatatt 121  Q
    |||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||    
T  990265 aaatcacaggaaaattcataaattttaacaggagaaaagaaatcgaatctcatatt 990210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 11668172 - 11668218
Alignment:
Q  75 gaaaattcagaaatttgaacaggagaaaaggaatcgaatctcatatt 121  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  11668172 gaaaattcagtaatttgaacaggagaaaaggaatcgaatctcatatt 11668218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 11676309 - 11676367
Alignment:
Q  22 gcagccacagcgaccgtttttggaccttttcacgtcgagaacaaaaatcacaggaaaat 80  Q
    |||||||| | |||||||||||| ||||||||||| ||||||||||||||||| |||||    
T  11676309 gcagccaccgtgaccgtttttggtccttttcacgttgagaacaaaaatcacagcaaaat 11676367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 272 - 324
Target Start/End: Original strand, 29668972 - 29669023
Alignment:
Q  272 gatttcagtttgttcctgcttgcttgccgtttgtgatttgcgattttgttgtg 324  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||| |||||    
T  29668972 gatttcagtttgttcctgct-gcttgccgtttgcgatttgcgattttcttgtg 29669023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 11668026 - 11668084
Alignment:
Q  22 gcagccacagcgaccgtttttggaccttttcacgtcgagaacaaaaatcacaggaaaat 80  Q
    |||||||| | |||||||||||| ||||||||||| ||||||||||| ||||| |||||    
T  11668026 gcagccaccgtgaccgtttttggtccttttcacgttgagaacaaaaaccacagcaaaat 11668084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 20 - 310
Target Start/End: Original strand, 27221447 - 27221722
Alignment:
Q  20 cagcagccacagcgaccgtttttggaccttttcacgtcgagaacaaaaatcacaggaaaattcagaaattt-gaacaggagaaaaggaatcgaatctcat 118  Q
    |||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27221447 cagcagccaccgtgaccgtttttggaccttttcacgccgagaacaaaaatcacaggaaaattcagaaattttgaacaggagaaaaggaatcgaatctcat 27221546  T
Q  119 attnnnnnnnnngcacaagaatacaagaacaggagaagaaggaatctaaatcttgtcttttttacacaaaccaattacttacttctcttcctgcttgcga 218  Q
    |||         |||||||||||||||              |||||| |||||| ||||||||||||| | ||||||||||||||||||||| ||| |||    
T  27221547 attaaaaaaaa-gcacaagaatacaag--------------gaatctgaatcttatcttttttacacacatcaattacttacttctcttccttcttccga 27221631  T
Q  219 tttgcgattctggtgttgccagttcttgcttcattctctttgttcaggtttaagatttcagtttgttcctgcttgcttgccgtttgtgattt 310  Q
    ||||||||||||||||||||  ||||||||||| ||||||| |||||||||  ||||||||||||||||||| ||||||||||||| |||||    
T  27221632 tttgcgattctggtgttgccgtttcttgcttcactctctttcttcaggtttgcgatttcagtttgttcctgc-tgcttgccgtttgcgattt 27221722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 35127235 - 35127000
Alignment:
Q  18 atcagcagccacagcgaccgtttttggaccttttcacgtcgagaacaaaaatcacaggaaaattcagaaa-tttgaacaggagaaaaggaatcgaatctc 116  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  35127235 atcagcagccaccgtgaccgtttttggaccttttcacgccgagaacaaaaatcacaggaaaattcagaaattttgaacaggagaaaaggaatcgaatctc 35127136  T
Q  117 atattnnnnnnnnngcacaagaatacaagaacaggagaagaaggaatctaaatcttgtcttttttacacaaaccaattacttacttctcttcctgcttgc 216  Q
    |||||         |||||||||||||||||||||               |||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  35127135 atatt-gaaaaaaagcacaagaatacaagaacagg---------------aatcttatcttttttacacaaatcaattacttacttctcttcctgcttgc 35127052  T
Q  217 gatttgcgattctggtgttgccagttcttgcttcattctctttgttcaggtt 268  Q
    ||||||| ||||||||||||||  ||||||||||| ||||||| ||||||||    
T  35127051 gatttgccattctggtgttgccgtttcttgcttcactctctttcttcaggtt 35127000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 190 - 310
Target Start/End: Complemental strand, 37921867 - 37921748
Alignment:
Q  190 caattacttacttctcttcctgcttgcgatttgcgattctggtgttgccagttcttgcttcattctctttgttcaggtttaagatttcagtttgttcctg 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||| ||||||||||  ||||||||||||||||||    
T  37921867 caattacttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttcttgcttcactctcttcgttcaggtttgcgatttcagtttgttcctg 37921768  T
Q  290 cttgcttgccgtttgtgattt 310  Q
    | ||||||||||||| |||||    
T  37921767 c-tgcttgccgtttgcgattt 37921748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 167 - 268
Target Start/End: Original strand, 2545189 - 2545290
Alignment:
Q  167 aatcttgtcttttttacacaaaccaattacttacttctcttcctgcttgcgatttgcgattctggtgttgccagttcttgcttcattctctttgttcagg 266  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||  ||||||||||| ||||||||||||||    
T  2545189 aatcttatcttttttacacaaatcaattacttacttctcttcctgcttgagatttgcgattcttgtgttgccgtttcttgcttcactctctttgttcagg 2545288  T
Q  267 tt 268  Q
    ||    
T  2545289 tt 2545290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 193 - 269
Target Start/End: Complemental strand, 9308877 - 9308801
Alignment:
Q  193 ttacttacttctcttcctgcttgcgatttgcgattctggtgttgccagttcttgcttcattctctttgttcaggttt 269  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||| |||||||||    
T  9308877 ttacttacttctcttcctgcttgcgatttgcgattctcgtgttgccgtttcttgcttcattctctttcttcaggttt 9308801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 193 - 310
Target Start/End: Original strand, 46278805 - 46278927
Alignment:
Q  193 ttacttacttctcttcctgcttgcgatttgcgattctggtgttgccagttcttgc------ttcattctctttgttcaggtttaagatttcagtttgttc 286  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||  |||||||      ||||||||||||||||||||||  |||||||||||| ||    
T  46278805 ttacttacttctcttcatgcttgcgatttgcgattttggtgttgccgtttcttgcttcttgttcattctctttgttcaggtttgcgatttcagtttggtc 46278904  T
Q  287 ctgcttgcttgccgtttgtgattt 310  Q
    |||| ||||||||||||| |||||    
T  46278905 ctgc-tgcttgccgtttgcgattt 46278927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 190 - 269
Target Start/End: Original strand, 36430159 - 36430237
Alignment:
Q  190 caattacttacttctcttcctgcttgcgatttgcgattctggtgttgccagttcttgcttcattctctttgttcaggttt 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||| ||||||||||||    
T  36430159 caattacttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttcttgcttcactctc-ttgttcaggttt 36430237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 9291948 - 9292023
Alignment:
Q  145 gaacaggagaagaaggaatctaaatcttgtcttttttacacaaaccaattacttacttctcttcctgcttgcgatt 220  Q
    ||||||||||||||| ||||| |||||  ||||||||||||||| |||||||||||||||||||||||||||||||    
T  9291948 gaacaggagaagaagaaatctgaatctaatcttttttacacaaatcaattacttacttctcttcctgcttgcgatt 9292023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 9291904 - 9291958
Alignment:
Q  47 cttttcacgtcgagaacaaaaatcacaggaaaattcagaaatttgaacaggagaa 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9291904 cttttcacgtcgagaacaaaaatcacaggaaaattcagaaatttgaacaggagaa 9291958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 2545013 - 2545075
Alignment:
Q  18 atcagcagccacagcgaccgtttttggaccttttcacgtcgagaacaaaaatcacaggaaaat 80  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2545013 atcagcagccaccgtgaccgtttttggaccttttcacgccgagaacaaaaatcacaggaaaat 2545075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 46278554 - 46278616
Alignment:
Q  18 atcagcagccacagcgaccgtttttggaccttttcacgtcgagaacaaaaatcacaggaaaat 80  Q
    |||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46278554 atcagcagccaacgtgaccgtttttggaccttttcacgtcgagaacaaaaatcacaggaaaat 46278616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 36430039 - 36430097
Alignment:
Q  18 atcagcagccacagcgaccgtttttggaccttttcacgtcgagaacaaaaatcacagga 76  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||    
T  36430039 atcagcagccaccgtgaccgtttttggaccttttcacgccgagaacaaaaatcacagga 36430097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 46278663 - 46278709
Alignment:
Q  75 gaaaattcagaaatttgaacaggagaaaaggaatcgaatctcatatt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  46278663 gaaaattcagaaatttgaacaggagaaaaggaatcgaatctcatatt 46278709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 2545103 - 2545150
Alignment:
Q  75 gaaaattcagaaattt-gaacaggagaaaaggaatcgaatctcatatt 121  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  2545103 gaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 2545150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 121
Target Start/End: Complemental strand, 37921948 - 37921915
Alignment:
Q  88 tttgaacaggagaaaaggaatcgaatctcatatt 121  Q
    ||||||||||||||||||||||||||||||||||    
T  37921948 tttgaacaggagaaaaggaatcgaatctcatatt 37921915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 121
Target Start/End: Original strand, 36430092 - 36430120
Alignment:
Q  93 acaggagaaaaggaatcgaatctcatatt 121  Q
    |||||||||||||||||||||||||||||    
T  36430092 acaggagaaaaggaatcgaatctcatatt 36430120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 6e-68; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 75 - 310
Target Start/End: Complemental strand, 9875 - 9639
Alignment:
Q  75 gaaaattcagaaattt-gaacaggagaaaaggaatcgaatctcatattnnnnnnnnngcacaagaatacaagaacaggagaagaaggaatctaaatcttg 173  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||| | ||||||     
T  9875 gaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatattaaaaaaaaagcacaagaatacaagaacaggagaagaaggaatatgaatctta 9776  T
Q  174 tcttttttacacaaaccaattacttacttctcttcctgcttgcgatttgcgattctggtgttgccagttcttgcttcattctctttgttcaggtttaaga 273  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||| |||||||||| ||||||  ||    
T  9775 tcttttttacacaaatcaattacttacttctcttcctgcttgcgatttgtgattctggtgttgccgtttcttgcttcactctctttgttaaggtttgcga 9676  T
Q  274 -tttcagtttgttcctgcttgcttgccgtttgtgattt 310  Q
     ||||||||||| ||||| ||| ||||||||| |||||    
T  9675 ttttcagtttgtccctgc-tgcctgccgtttgcgattt 9639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 75 - 310
Target Start/End: Complemental strand, 12601 - 12365
Alignment:
Q  75 gaaaattcagaaattt-gaacaggagaaaaggaatcgaatctcatattnnnnnnnnngcacaagaatacaagaacaggagaagaaggaatctaaatcttg 173  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||| | ||||||     
T  12601 gaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatattaaaaaaaaagcacaagaatacaagaacaggagaagaaggaatatgaatctta 12502  T
Q  174 tcttttttacacaaaccaattacttacttctcttcctgcttgcgatttgcgattctggtgttgccagttcttgcttcattctctttgttcaggtttaaga 273  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||| |||||||||| ||||||  ||    
T  12501 tcttttttacacaaatcaattacttacttctcttcctgcttgcgatttgtgattctggtgttgccgtttcttgcttcactctctttgttaaggtttgcga 12402  T
Q  274 -tttcagtttgttcctgcttgcttgccgtttgtgattt 310  Q
     ||||||||||| ||||| ||| ||||||||| |||||    
T  12401 ttttcagtttgtccctgc-tgcctgccgtttgcgattt 12365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 47 - 172
Target Start/End: Complemental strand, 30641636 - 30641512
Alignment:
Q  47 cttttcacgtcgagaacaaaaatcacaggaaaattcagaaatttgaacaggagaaaaggaatcgaatctcatattnnnnnnnnngcacaagaatacaaga 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||    
T  30641636 cttttcacgtcgagaacaaaaatcacaggaaaattcagaaatttgaacaggagaaaaggaatcgaatctcatatt-aaaaaaaagcacaagaatacaaga 30641538  T
Q  147 acaggagaagaaggaatctaaatctt 172  Q
    ||||| ||||||||||||| ||||||    
T  30641537 acaggcgaagaaggaatctgaatctt 30641512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 167 - 269
Target Start/End: Complemental strand, 3185939 - 3185837
Alignment:
Q  167 aatcttgtcttttttacacaaaccaattacttacttctcttcctgcttgcgatttgcgattctggtgttgccagttcttgcttcattctctttgttcagg 266  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||| ||||||    
T  3185939 aatcttatcttttttacacaaatcaattacttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttcttgcttcactctctttcttcagg 3185840  T
Q  267 ttt 269  Q
    |||    
T  3185839 ttt 3185837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 12688 - 12626
Alignment:
Q  18 atcagcagccacagcgaccgtttttggaccttttcacgtcgagaacaaaaatcacaggaaaat 80  Q
    ||||||||||||   ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12688 atcagcagccaccttgaccgtttttggaccttttcacgccgagaacaaaaatcacaggaaaat 12626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 17723 - 17661
Alignment:
Q  18 atcagcagccacagcgaccgtttttggaccttttcacgtcgagaacaaaaatcacaggaaaat 80  Q
    ||||||||||||   ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17723 atcagcagccaccttgaccgtttttggaccttttcacgccgagaacaaaaatcacaggaaaat 17661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 9946 - 9900
Alignment:
Q  34 accgtttttggaccttttcacgtcgagaacaaaaatcacaggaaaat 80  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  9946 accgtttttggaccttttcacgccgagaacaaaaatcacaggaaaat 9900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 30641513 - 30641468
Alignment:
Q  193 ttacttacttctcttcctgcttgcgatttgcgattctggtgttgcc 238  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  30641513 ttacttacttctcttcctgcttgcgatttccgattctggtgttgcc 30641468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 17636 - 17589
Alignment:
Q  75 gaaaattcagaaattt-gaacaggagaaaaggaatcgaatctcatatt 121  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  17636 gaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 17589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 93 - 321
Target Start/End: Complemental strand, 2643636 - 2643424
Alignment:
Q  93 acaggagaaaaggaatcgaatctcatattnnnnnnnnngcacaagaatacaagaacaggagaagaaggaatctaaatcttgtcttttttacacaaaccaa 192  Q
    ||||||||||| |||||||||||||||||         ||||||||||||||||||||||| ||||||||||| |||||| ||||||||||             
T  2643636 acaggagaaaacgaatcgaatctcatattaaaaaa---gcacaagaatacaagaacaggaggagaaggaatctgaatcttatcttttttac--------- 2643549  T
Q  193 ttacttacttctcttcctgcttgcgatttgcgattctggtgttgccagttcttgcttcattctctttgttcaggtttaagatttcagtttgttcctgctt 292  Q
        ||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||| |||||||||  ||||||||||||||||||||     
T  2643548 ----ttacttctcttcctgcttgcgatttgcgattctggtgttgccgtttcttgcttcactctctttcttcaggtttgcgatttcagtttgttcctgctg 2643453  T
Q  293 gcttgccgtttgtgatttgcgattttgtt 321  Q
      |||||||||| ||||||||||||||||    
T  2643452 ctttgccgtttgcgatttgcgattttgtt 2643424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 174 - 269
Target Start/End: Original strand, 11016216 - 11016311
Alignment:
Q  174 tcttttttacacaaaccaattacttacttctcttcctgcttgcgatttgcgattctggtgttgccagttcttgcttcattctctttgttcaggttt 269  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  11016216 tcttttttacacaaatcaattacttacttctcttcctgcttgcgatttgcgattctggtgttgctgtttcttgcttcattctctttgttcaggttt 11016311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 11016036 - 11016098
Alignment:
Q  18 atcagcagccacagcgaccgtttttggaccttttcacgtcgagaacaaaaatcacaggaaaat 80  Q
    |||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11016036 atcagcggccaccgtgaccgtttttggaccttttcacgtcgagaacaaaaatcacaggaaaat 11016098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 2643689 - 2643631
Alignment:
Q  18 atcagcagccacagcgaccgtttttggaccttttcacgtcgagaacaaaaatcacagga 76  Q
    |||||||||||| | ||||||||||| ||||||||||| ||||||||||||||||||||    
T  2643689 atcagcagccaccgtgaccgtttttgtaccttttcacgccgagaacaaaaatcacagga 2643631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 2315940 - 2315886
Alignment:
Q  18 atcagcagccacagcgaccgtttttggaccttttcacgtcgagaacaaaaatcac 72  Q
    |||||||||||| | || |||||||||||||||||||| ||||||||||||||||    
T  2315940 atcagcagccaccgtgatcgtttttggaccttttcacgccgagaacaaaaatcac 2315886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 208
Target Start/End: Complemental strand, 14435452 - 14435405
Alignment:
Q  161 aatctaaatcttgtcttttttacacaaaccaattacttacttctcttc 208  Q
    ||||| |||||| ||||||||||||||| |||||||||||||||||||    
T  14435452 aatctcaatcttatcttttttacacaaatcaattacttacttctcttc 14435405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 14435323 - 14435290
Alignment:
Q  205 cttcctgcttgcgatttgcgattctggtgttgcc 238  Q
    |||||||||| |||||||||||||||||||||||    
T  14435323 cttcctgcttccgatttgcgattctggtgttgcc 14435290  T

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Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 196 - 324
Target Start/End: Complemental strand, 23552455 - 23552328
Alignment:
Q  196 cttacttctcttcctgcttgcgatttgcgattctggtgttgccagttcttgcttcattctctttgttcaggtttaagatttcagtttgttcctgcttgct 295  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||  |||| |||||||||||||| ||||    
T  23552455 cttacttctcttcctgcttgcgatttgcgattctggtgttgccctttcttgcttcactctctttgttcaggtttgcgattacagtttgttcctgc-tgct 23552357  T
Q  296 tgccgtttgtgatttgcgattttgttgtg 324  Q
    ||||||||| |||||||||||||||||||    
T  23552356 tgccgtttgcgatttgcgattttgttgtg 23552328  T

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Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 75 - 216
Target Start/End: Original strand, 35754160 - 35754300
Alignment:
Q  75 gaaaattcagaaatttgaacaggagaaaaggaatcgaatctcatattnnnnnnnnngcacaagaatacaagaacaggagaagaaggaatctaaatcttgt 174  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||         ||||||||||| ||||||||||||||||||||||| |||||| |    
T  35754160 gaaaattcagaaatttgaacagaagaaaaggaatcgaatctcatattaaaaaaaa-gcacaagaatataagaacaggagaagaaggaatctgaatcttat 35754258  T
Q  175 cttttttacacaaaccaattacttacttctcttcctgcttgc 216  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  35754259 cttttttacacaaatcaattacttacttctcttcctgcttgc 35754300  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 243 - 323
Target Start/End: Original strand, 35754296 - 35754375
Alignment:
Q  243 cttgcttcattctctttgttcaggtttaagatttcagtttgttcctgcttgcttgccgtttgtgatttgcgattttgttgt 323  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||| | ||||||||||||||||    
T  35754296 cttgcttcattctctttgttcaggtttgcgatttcagtttgttcctgc-tgcttgccgtttgcggtttgcgattttgttgt 35754375  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 35754060 - 35754122
Alignment:
Q  18 atcagcagccacagcgaccgtttttggaccttttcacgtcgagaacaaaaatcacaggaaaat 80  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35754060 atcagcagccaccgtgaccgtttttggaccttttcacgccgagaacaaaaatcacaggaaaat 35754122  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 23552526 - 23552464
Alignment:
Q  18 atcagcagccacagcgaccgtttttggaccttttcacgtcgagaacaaaaatcacaggaaaat 80  Q
    |||||||||||| | ||||||||||||||||||||| | ||||||||||||||||||||||||    
T  23552526 atcagcagccaccgtgaccgtttttggaccttttcaagccgagaacaaaaatcacaggaaaat 23552464  T

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Target: chr1; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 32060486 - 32060440
Alignment:
Q  75 gaaaattcagaaatttgaacaggagaaaaggaatcgaatctcatatt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  32060486 gaaaattcagaaatttgaacaggagaaaaggaatcgaatctcatatt 32060440  T

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Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 32060575 - 32060515
Alignment:
Q  18 atcagcagccacagcgaccgtttttggaccttttcacgtcgagaacaaaaatcacaggaaa 78  Q
    |||||||||||| | ||||||||||||| ||||||||| ||||||||||||||||||||||    
T  32060575 atcagcagccaccgtgaccgtttttggatcttttcacgccgagaacaaaaatcacaggaaa 32060515  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 8081937 - 8081991
Alignment:
Q  22 gcagccacagcgaccgtttttggaccttttcacgtcgagaacaaaaatcacagga 76  Q
    |||||||| | || |||||||||||||||||| | ||||||||||||||||||||    
T  8081937 gcagccaccgtgagcgtttttggaccttttcatgccgagaacaaaaatcacagga 8081991  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 8082029 - 8082066
Alignment:
Q  190 caattacttacttctcttcctgcttgcgatttgcgatt 227  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  8082029 caatttcttacttctcttcctgcttgcgatttgcgatt 8082066  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 121
Target Start/End: Original strand, 8081986 - 8082014
Alignment:
Q  93 acaggagaaaaggaatcgaatctcatatt 121  Q
    |||||||||||||||||||||||||||||    
T  8081986 acaggagaaaaggaatcgaatctcatatt 8082014  T

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