View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12105_low_4 (Length: 270)
Name: NF12105_low_4
Description: NF12105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12105_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 52248659 - 52248869
Alignment:
| Q |
1 |
ctgacaacatgttatagctcaaatcaaggaatttcaacatcttcaacttggaacataattcaaggcatcctaatatttacagattcaaagaggtaagagt |
100 |
Q |
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| T |
52248659 |
ctgacaacatgttatagctcaaatcaaggaatttcaacatcttcaacttggaacgtaattcaaggcatcctaatatttacagattcaaagaggtaagagt |
52248758 |
T |
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| Q |
101 |
tttattttttaaaaattgtttcttctttaggtttggaggggcatttcgaatgtaatatttggttatctgcattactttatgcattgctcactgatctcat |
200 |
Q |
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| T |
52248759 |
tttattttttaaaaattgtttcttctttaggtttggaggggcatttcgaatgtaatatttggttatctgcattactttatgcattgctcactgatctcat |
52248858 |
T |
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| Q |
201 |
tttacacactt |
211 |
Q |
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||||||||||| |
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| T |
52248859 |
tttacacactt |
52248869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 62 - 181
Target Start/End: Original strand, 41124975 - 41125094
Alignment:
| Q |
62 |
aaggcatcctaatatttacagattcaaagaggtaagagttttattttttaaaaattgtttcttctttaggtttggaggggcatttcgaatgtaatatttg |
161 |
Q |
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| T |
41124975 |
aaggcatcctaatattatcagattcaaagaggtaacagtttttccttccttaaactgtttcttcattaggtttggaggggcattttgactgtagtatttg |
41125074 |
T |
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| Q |
162 |
gttatctgcattactttatg |
181 |
Q |
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||| |||||||||||||||| |
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| T |
41125075 |
gttttctgcattactttatg |
41125094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 211
Target Start/End: Original strand, 41118784 - 41118927
Alignment:
| Q |
62 |
aaggcatcctaatatttacagattcaaagaggtaagagttttattttttaaaaattgtttcttctttaggtttggaggggcatttcgaatgtaatatttg |
161 |
Q |
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|||||||||||||||| ||||||||||||||||| |||||| | ||| ||| ||||||||| ||||||||| |||| |||| ||||| | |||||| |
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| T |
41118784 |
aaggcatcctaatattatcagattcaaagaggtaacagtttt-tctttcttaaactgtttcttcattaggtttgtagggccattatgaatgcagtatttg |
41118882 |
T |
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| Q |
162 |
gttatctgcattactttatgcattgctcactgatctcattttacacactt |
211 |
Q |
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| T |
41118883 |
gttatctgtattacttca-----tgcttactgctctcattttacacactt |
41118927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 254
Target Start/End: Original strand, 52248917 - 52248959
Alignment:
| Q |
212 |
aatatctggtgttagctactatcattcaatggtatccaagcac |
254 |
Q |
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| T |
52248917 |
aatatctggtgttagctactatcattcaatggtatccaagcac |
52248959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 246
Target Start/End: Original strand, 41119665 - 41119700
Alignment:
| Q |
211 |
taatatctggtgttagctactatcattcaatggtat |
246 |
Q |
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| T |
41119665 |
taatatctggtgttagctactgtcattcaatggtat |
41119700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 32999025 - 32999070
Alignment:
| Q |
4 |
acaacatgttatagctcaaatcaaggaatttcaacatcttcaactt |
49 |
Q |
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| T |
32999025 |
acaacatgttatagctcaaatcaagaaacttcaacatcttcaactt |
32999070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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