View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12106_high_11 (Length: 337)
Name: NF12106_high_11
Description: NF12106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12106_high_11 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 226 - 337
Target Start/End: Complemental strand, 3002011 - 3001899
Alignment:
| Q |
226 |
gataactctgtaaaaacaagtcaat-gtcataaagtttggacaagaaactgcagcaattaccgtttatgcaacctttaaatagtattactatcccattta |
324 |
Q |
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| T |
3002011 |
gataactatgtaaaaacaagtcaaaagtcataaagtttggacaagaaactgcagcaattaccatttatgcaacctttaaatagtattactatcccattta |
3001912 |
T |
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| Q |
325 |
gtacaatatatca |
337 |
Q |
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||| ||||||||| |
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| T |
3001911 |
gtataatatatca |
3001899 |
T |
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Target: chr5; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 16895253 - 16895055
Alignment:
| Q |
11 |
cataggagggatgattttgaggtagcaagtgctgataagaactttgagagcacacccaaggagcaagttagtagagtaggctcttaggatgctcatctca |
110 |
Q |
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| T |
16895253 |
cataggagggatggttttgaggtagcaagtgctgataagatctttgagagcacatccaaggaacaagtgagtagagtaggctcttaggaggcttgtctca |
16895154 |
T |
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| Q |
111 |
gtctctaccatcatcatcatcatgtacatatacttttccttttggggaagagaaaacattttagaccc--aatgtgtatactgcatgattcaactgggtt |
208 |
Q |
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| T |
16895153 |
gagtgtgccgtgatcatgtacagatac---tacttttccctttggggaagagaaaacattttagacccataatatgtatactgcatgattcaattgggtt |
16895057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 32707194 - 32707116
Alignment:
| Q |
11 |
cataggagggatgattttgaggtagcaagtgctgataagaactttgagagcacacccaaggagcaagttagtagagtag |
89 |
Q |
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| T |
32707194 |
cataggagggatgattttgaggtagcaagtgctgataagaactttgagagcacacccaaggagcaagttagtagagtag |
32707116 |
T |
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