View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12106_high_15 (Length: 306)

Name: NF12106_high_15
Description: NF12106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12106_high_15
NF12106_high_15
[»] chr3 (4 HSPs)
chr3 (56-306)||(5351915-5352164)
chr3 (179-306)||(5344897-5345024)
chr3 (185-229)||(5325075-5325119)
chr3 (179-237)||(5338089-5338147)
[»] chr7 (8 HSPs)
chr7 (9-65)||(39577595-39577651)
chr7 (9-62)||(39592072-39592125)
chr7 (10-65)||(39541732-39541787)
chr7 (9-65)||(39334772-39334828)
chr7 (9-65)||(39346036-39346092)
chr7 (9-65)||(39567779-39567835)
chr7 (10-65)||(39550989-39551044)
chr7 (8-65)||(39360580-39360637)
[»] chr8 (1 HSPs)
chr8 (190-282)||(14535283-14535375)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 56 - 306
Target Start/End: Complemental strand, 5352164 - 5351915
Alignment:
Q  56 taacattgcaaataaaacacaggacaaggcaacaatgcaaataaaattctaaatgtaaataaagaacaaacacgttttattaattgaataaaaatcacga 155  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||  || |||| |||||||||||||||||||||    
T  5352164 taacattgtaaatcaaacacaggacaaggcaacaatgcaaataaaattctaaatgcaaataaagaacaat-acatttttttaattgaataaaaatcacga 5352066  T
Q  156 ttgaagcaatttatggaacttaaagttgtttcaatttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaactccctccaaattattcttg 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5352065 ttgaagcaatttatggaacttaaagttgtttcaatttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaactccctccaaattattcttg 5351966  T
Q  256 gcatcttgatcaatcaaatcgccatcaccgttaaattttgctggaggctga 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5351965 gcatcttgatcaatcaaatcgccatcaccgttaaattttgctggaggctga 5351915  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 179 - 306
Target Start/End: Complemental strand, 5345024 - 5344897
Alignment:
Q  179 agttgtttcaatttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaactccctccaaattattcttggcatcttgatcaatcaaatcgcc 278  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||| |||| | ||  |||  ||||||| ||||||| |||||||||||| ||    
T  5345024 agttgtttcaatttttgccttgaagttgcagagtaaatgccttcaaggacaacagaattgccaacaacctattcttagcatcttcatcaatcaaatcacc 5344925  T
Q  279 atcaccgttaaattttgctggaggctga 306  Q
    |||||  |||||||||||||||||||||    
T  5344924 atcactattaaattttgctggaggctga 5344897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 5325075 - 5325119
Alignment:
Q  185 ttcaatttttgccttgaagttgaagggtaaatgccttcaaggaca 229  Q
    |||||||| |||||||||||| |||||||||| ||||||||||||    
T  5325075 ttcaatttctgccttgaagtttaagggtaaattccttcaaggaca 5325119  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 5338089 - 5338147
Alignment:
Q  179 agttgtttcaatttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaact 237  Q
    ||||||||||| |||  |||||||| |||||||||||| |||| ||||||| |||||||    
T  5338089 agttgtttcaaatttaaccttgaagctgaagggtaaattcctttaaggacacaagaact 5338147  T

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Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 39577595 - 39577651
Alignment:
Q  9 gttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgca 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39577595 gttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgca 39577651  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 39592072 - 39592125
Alignment:
Q  9 gttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacatt 62  Q
    |||||||||||||| || ||||| |||||||||||||| |||||||||||||||    
T  39592072 gttttacctgtcgttacacgttttctttgtcctccagaaatacctcttaacatt 39592125  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 39541732 - 39541787
Alignment:
Q  10 ttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgca 65  Q
    |||||||||| ||||| |||||| ||||||| ||||||||||||| ||||||||||    
T  39541732 ttttacctgttgtaacgcgtttcttttgtccaccagagatacctcgtaacattgca 39541787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 39334828 - 39334772
Alignment:
Q  9 gttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgca 65  Q
    ||||||||||| ||||  |||||| ||||||| |||||||||||||||| |||||||    
T  39334828 gttttacctgttgtaaggcgtttcttttgtccgccagagatacctcttatcattgca 39334772  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 39346092 - 39346036
Alignment:
Q  9 gttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgca 65  Q
    ||||||||||| ||||  |||||| ||||||| |||||||||||||||| |||||||    
T  39346092 gttttacctgttgtaaggcgtttcttttgtccgccagagatacctcttatcattgca 39346036  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 39567779 - 39567835
Alignment:
Q  9 gttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgca 65  Q
    ||||||||||| ||||  |||||| ||||||| ||||||||||||| ||||||||||    
T  39567779 gttttacctgttgtaaggcgtttcttttgtccaccagagatacctcgtaacattgca 39567835  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 39550989 - 39551044
Alignment:
Q  10 ttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgca 65  Q
    ||||||| || ||||| |||||| ||||||| ||||||||||||| ||||||||||    
T  39550989 ttttaccagttgtaacgcgtttcttttgtccaccagagatacctcgtaacattgca 39551044  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 39360637 - 39360580
Alignment:
Q  8 agttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgca 65  Q
    |||||||||||| ||||  |||||| ||||||| ||||||||| |||||| |||||||    
T  39360637 agttttacctgttgtaaggcgtttcttttgtccgccagagatagctcttatcattgca 39360580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 282
Target Start/End: Original strand, 14535283 - 14535375
Alignment:
Q  190 tttttgccttgaagttgaagggtaaatgccttcaaggacaaaagaactccctccaaattattcttggcatcttgatcaatcaaatcgccatca 282  Q
    ||||||||||||||    || |||||||||| ||| || |||||||||   | ||| |||||||| || |||| |||||||||||||||||||    
T  14535283 tttttgccttgaagccttagagtaaatgcctgcaaagataaaagaacttgtttcaacttattcttagcctcttcatcaatcaaatcgccatca 14535375  T

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