View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12106_high_16 (Length: 305)
Name: NF12106_high_16
Description: NF12106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12106_high_16 |
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| [»] scaffold0728 (1 HSPs) |
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Alignment Details
Target: scaffold0728 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: scaffold0728
Description:
Target: scaffold0728; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 5372 - 5646
Alignment:
| Q |
11 |
aatgagcttaaacaacttcaacatatgttatcgccttcaaatactaatatgctgtctcccaagaatgaagagcatcgtcttttacaagcttcatttggtg |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
5372 |
aatgagcttaaacaacttcaacatatgttatcgccttcaaatattaatatgctgtctcccaagaatgatgagcatcgtcttttacaagcttcatttagtg |
5471 |
T |
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| Q |
111 |
tcccttcatgcggtagtatgtcacctagaaggcttgaaccaatctccccactgatccctcaaatgtccacatttcctcatcgcgagaaacagcagcaaca |
210 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||| || |||||||||||||||||||||||||||| |
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| T |
5472 |
tcccttcatgcggtagcatgtcacctagaaggcttgaacaaatctccccactgagccctcaaatgtctgcacttcctcatcgcgagaaacagcagcaaca |
5571 |
T |
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| Q |
211 |
gctgcagagtgttagttctagggaacttggttccaaaatcccttccccagttgttggatcacctacggacccatg |
285 |
Q |
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|||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5572 |
actgcagagtgttagctctagggaacttggttacaaaatcccttcctcagttgttggatcacctacggacccatg |
5646 |
T |
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Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 19409806 - 19410080
Alignment:
| Q |
11 |
aatgagcttaaacaacttcaacatatgttatcgccttcaaatactaatatgctgtctcccaagaatgaagagcatcgtcttttacaagcttcatttggtg |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
19409806 |
aatgagcttaaacaacttcaacatatgttatcgccttcaaatattaatatgctgtctcccaagaatgatgagcatcgtcttttacaagcttcatttagtg |
19409905 |
T |
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| Q |
111 |
tcccttcatgcggtagtatgtcacctagaaggcttgaaccaatctccccactgatccctcaaatgtccacatttcctcatcgcgagaaacagcagcaaca |
210 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||| || |||||||||||||||||||||||||||| |
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| T |
19409906 |
tcccttcatgcggtagcatgtcacctagaaggcttgaacaaatctccccactgagccctcaaatgtctgcacttcctcatcgcgagaaacagcagcaaca |
19410005 |
T |
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| Q |
211 |
gctgcagagtgttagttctagggaacttggttccaaaatcccttccccagttgttggatcacctacggacccatg |
285 |
Q |
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|||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
19410006 |
actgcagagtgttagctctagggaacttggttacaaaatcccttcctcagttgttggatcacctacggacccatg |
19410080 |
T |
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