View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12106_high_4 (Length: 465)
Name: NF12106_high_4
Description: NF12106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12106_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 29 - 439
Target Start/End: Complemental strand, 35367990 - 35367580
Alignment:
| Q |
29 |
agtgacctctctgtcacatctataatcatagagggattgagagaacagttagagcgacacaaaggacaattagggtttttacgaagccaagcctcaatgc |
128 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||| | |
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| T |
35367990 |
agtgacctctgtgtcacatctataatcatagagagattgagagaacagttagagcgacacagaggacaattggggtttttacgaagccaaacctcaatac |
35367891 |
T |
|
| Q |
129 |
aatcgagatgaaatgtgtgataacaaatagagagggtaccaaggcgatcattgtcttcaaattcatctaaacaaatgatacactcacacgtagattcttc |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35367890 |
aatcgagatgaaatgtgtgataacaaatagagagggtaccaaggcgatcattgtcttcaaattcatctaaacaaatgatacattcacacgtagattcttc |
35367791 |
T |
|
| Q |
229 |
ttgtgcataccgagccgtgtagatggaaacgaggatggtgtttataaccgtcttgtctaagttgtggacgacgtgtgtctgcccagccacggcgtgcgtc |
328 |
Q |
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| T |
35367790 |
ttgtgcatactgagccgtgtagatggaaacgaggatggtgtttataatcgtcttgtctaagttgtggacgacgtgcgtctgcccagccacgacgtgcgcc |
35367691 |
T |
|
| Q |
329 |
tgcccgtcaaaataaaagatgaggaaatacaacacaaccgatgctatgaggaccatggcaaaataatagaaaggactcatcactaatgaagatgggggcg |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35367690 |
tgcccgtcaaaataaaagatgaggaaatacaacacaaccgatgctatgaggaccatggcaaaataatagaaaggactcatcactaatgaagatgggggcg |
35367591 |
T |
|
| Q |
429 |
tgagtgtgatg |
439 |
Q |
| |
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| T |
35367590 |
tgagtgtgatg |
35367580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 29 - 306
Target Start/End: Complemental strand, 35374931 - 35374654
Alignment:
| Q |
29 |
agtgacctctctgtcacatctataatcatagagggattgagagaacagttagagcgacacaaaggacaattagggtttttacgaagccaagcctcaatgc |
128 |
Q |
| |
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||||| ||||| | |||||||||||| |||||| |||||||| ||| | |||||||| | |||||||||||| ||||||||||||||||| ||||||| |
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| T |
35374931 |
agtgatctctccggcacatctataattatagagtgattgagatgacaactggagcgacatagaggacaattaggttttttacgaagccaagcttcaatgc |
35374832 |
T |
|
| Q |
129 |
aatcgagatgaaatgtgtgataacaaatagagagggtaccaaggcgatcattgtcttcaaattcatctaaacaaatgatacactcacacgtagattcttc |
228 |
Q |
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| T |
35374831 |
attcgagatggaagctgtgggaacaaagagggagtgtaccaatgtcattattgtcttcaaactcatccaagcaaataacacaatcacgtagagattcttc |
35374732 |
T |
|
| Q |
229 |
ttgtgcataccgagccgtgtagatggaaacgaggatggtgtttataaccgtcttgtctaagttgtggacgacgtgtgt |
306 |
Q |
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| T |
35374731 |
gtttgcatacttagcagtgtagacagagaaggggatggtgtttctgaccaactcgtctaagttgtggacgacatgtgt |
35374654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 214
Target Start/End: Complemental strand, 35356921 - 35356787
Alignment:
| Q |
80 |
gagcgacacaaaggacaattagggtttttacgaagccaagcctcaatgcaatcgagatgaaatgtgtgataacaaatagagagggtaccaaggcgatcat |
179 |
Q |
| |
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|||||||| | |||||||||||| | |||| |||||||||| ||||||||| ||||||| || ||||| |||||| || ||| || | || | ||||| |
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| T |
35356921 |
gagcgacatagaggacaattaggttgtttatgaagccaagcatcaatgcaagcgagatggaaagtgtgggaacaaagagggagagtgcgaatgtaatcat |
35356822 |
T |
|
| Q |
180 |
tgtcttcaaattcatctaaacaaatgatacactca |
214 |
Q |
| |
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||| |||||||||| | || |||||| | |||||| |
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| T |
35356821 |
tgttttcaaattcaaccaagcaaatggtgcactca |
35356787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 203
Target Start/End: Complemental strand, 10696826 - 10696703
Alignment:
| Q |
80 |
gagcgacacaaaggacaattagggtttttacgaagccaagcctcaatgcaatcgagatgaaatgtgtgataacaaatagagagggtaccaaggcgatcat |
179 |
Q |
| |
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|||||||| | |||||| ||||| | ||||| |||||| || ||||||||| ||||||| || ||||| |||||| || ||||| | || |||||||| |
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| T |
10696826 |
gagcgacaaataggacagttaggttgtttactaagccatgcttcaatgcaaacgagatggaaagtgtgggaacaaagaggcagggtgcgaatgcgatcat |
10696727 |
T |
|
| Q |
180 |
tgtcttcaaattcatctaaacaaa |
203 |
Q |
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|||||| ||||||||| ||||||| |
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| T |
10696726 |
tgtctttaaattcatccaaacaaa |
10696703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 138
Target Start/End: Complemental strand, 30812120 - 30812018
Alignment:
| Q |
37 |
ctctgtcacatctataatcatagagggattgagaga-acagttagagcgacacaaaggacaattagggtttttacgaagccaagcctcaatgcaatcgag |
135 |
Q |
| |
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|||||||||||||||||| | |||| |||||||||| ||| | |||||| | | ||| || ||||| ||||||||||| ||||| |||||||||| ||| |
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| T |
30812120 |
ctctgtcacatctataattacagagtgattgagagagacatgttgagcgatagagagggcagttaggttttttacgaagtcaagcttcaatgcaattgag |
30812021 |
T |
|
| Q |
136 |
atg |
138 |
Q |
| |
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||| |
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|
| T |
30812020 |
atg |
30812018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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