View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12106_low_1 (Length: 443)
Name: NF12106_low_1
Description: NF12106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12106_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 59 - 433
Target Start/End: Complemental strand, 13139770 - 13139396
Alignment:
| Q |
59 |
ggcgaatgatgctagataaattacctactgatgaagtcttagcctcccgaggatgtcatcttccttcagtgtgctctttatgcttggctcaagaagaatc |
158 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13139770 |
ggcgaatgatgctagataaattacctactgatgaagtcttagcctcccgaggatgtcatcttccttcagtgtgctctttatgcttggctcaagaagaatc |
13139671 |
T |
|
| Q |
159 |
caattttcatctattttttctatgtcagtatgcagttaatatttggaggtggtttgctacttgtttaaactgtcctcttcagtttcaatctaaagaagaa |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13139670 |
caattttcatctattttttctatgtcagtatgcagttaatatttggaggtggtttgctacttgtttaaactgtcctcttcagtttcaatctaaagaagaa |
13139571 |
T |
|
| Q |
259 |
atgtggtccaccattaacaaatgctctagcccccaaggtaggctagttattactgctgcaatgatcaatatcttcaatgtaatctggtttgcaaggaacc |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13139570 |
atgtggtccaccattaacaaatgctctagcccccaaggtaagctagttattactgctgcaatgatcaatatcttcaatgtaatctggtttgcaaggaacc |
13139471 |
T |
|
| Q |
359 |
aaaaaagattcaacagcaaaaccattcattggagaacctctatagctaatcttatttctagcaccaacctctctg |
433 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13139470 |
aaaaaagattcaacagcaaaaccattcattggagaacctctatagctaatcttatttctagcaccaacctctctg |
13139396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 59 - 433
Target Start/End: Complemental strand, 24558470 - 24558096
Alignment:
| Q |
59 |
ggcgaatgatgctagataaattacctactgatgaagtcttagcctcccgaggatgtcatcttccttcagtgtgctctttatgcttggctcaagaagaatc |
158 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24558470 |
ggcgaatgatgctagataaattacctactgatgaagtcttagcctcccgaggatgtcatcttccttcagtgtgctctttatgcttggctcaagaagaatc |
24558371 |
T |
|
| Q |
159 |
caattttcatctattttttctatgtcagtatgcagttaatatttggaggtggtttgctacttgtttaaactgtcctcttcagtttcaatctaaagaagaa |
258 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24558370 |
caattttcatctattttttctatgtcagtatgcagttaatatttggaggtggtttgctacttgtttaaactgtcctcttcagtttcaatctaaagaagaa |
24558271 |
T |
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| Q |
259 |
atgtggtccaccattaacaaatgctctagcccccaaggtaggctagttattactgctgcaatgatcaatatcttcaatgtaatctggtttgcaaggaacc |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24558270 |
atgtggtccaccattaacaaatgctctagcccccaaggtaagctagttattactgctgcaatgatcaatatcttcaatgtaatctggtttgcaaggaacc |
24558171 |
T |
|
| Q |
359 |
aaaaaagattcaacagcaaaaccattcattggagaacctctatagctaatcttatttctagcaccaacctctctg |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24558170 |
aaaaaagattcaacagcaaaaccattcattggagaacctctatagctaatcttatttctagcaccaacctctctg |
24558096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 13139866 - 13139821
Alignment:
| Q |
16 |
atgcatatgcttttaaaaaacatcactttcccaagattaagtgggc |
61 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13139866 |
atgcatatgcttttaaaaaacatcactttcccaagattaagtgggc |
13139821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 24558566 - 24558521
Alignment:
| Q |
16 |
atgcatatgcttttaaaaaacatcactttcccaagattaagtgggc |
61 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24558566 |
atgcatatgcttttaaaaaacatcactttcccaagattaagtgggc |
24558521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 62 - 281
Target Start/End: Complemental strand, 13142549 - 13142330
Alignment:
| Q |
62 |
gaatgatgctagataaattacctactgatgaagtcttagcctcccgaggatgtcatcttccttcagtgtgctctttatgcttggctcaagaagaatccaa |
161 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13142549 |
gaatgatgctagataaattacctactgatgaagtcttagcctcccgaggatgtcatcttccttcagtgtgctctttatgcttggctcaagaagaatccaa |
13142450 |
T |
|
| Q |
162 |
ttttcatctattttttctatgtcagtatgcagttaatatttggaggtggtttgctacttgtttaaactgtcctcttcagtttcaatctaaagaagaaatg |
261 |
Q |
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||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
13142449 |
ttttcatatattttttcaatgttagtatgcagttaatatttggaggtggtttgctacttgtttaaactgtcctctttagtttcaatctaaagaagaaatg |
13142350 |
T |
|
| Q |
262 |
tggtccaccattaacaaatg |
281 |
Q |
| |
|
|||||||||||||| ||||| |
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| T |
13142349 |
tggtccaccattaagaaatg |
13142330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 13142648 - 13142603
Alignment:
| Q |
16 |
atgcatatgcttttaaaaaacatcactttcccaagattaagtgggc |
61 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13142648 |
atgcatatgcttttaaaaaacatcactttctcaagattaagtgggc |
13142603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 21239193 - 21239122
Alignment:
| Q |
107 |
gaggatgtcatcttccttcagtgtgctctttatgcttggctcaagaagaatccaattttcatctattttttc |
178 |
Q |
| |
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||||||||||||| |||||| ||||||||||||||| ||| |||||||||| |||||||| ||||||| |
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| T |
21239193 |
gaggatgtcatctcccttcaatgtgctctttatgctccattcatgaagaatccacatttcatcttttttttc |
21239122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 202 - 350
Target Start/End: Complemental strand, 34240341 - 34240193
Alignment:
| Q |
202 |
tggaggtggtttgctacttgtttaaactgtcctcttcagtttcaatctaaagaagaaatgtggtccaccattaacaaatgctctagcccccaaggtaggc |
301 |
Q |
| |
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||||| ||||||||| |||||||||| ||| |||||||||| ||| | || ||||| |||||||||| ||||||||| ||||||||| | ||||| | | |
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| T |
34240341 |
tggagttggtttgcttcttgtttaaattgtgctcttcagttccaaaccaaggaagacatgtggtccatcattaacaagtgctctagctctcaaggaaaac |
34240242 |
T |
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| Q |
302 |
tagttattactgctgcaatgatcaatatcttcaatgtaatctggtttgc |
350 |
Q |
| |
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| |||||||||||||| |||||||||||||||||||| || |||||||| |
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| T |
34240241 |
ttgttattactgctgctatgatcaatatcttcaatgtgatttggtttgc |
34240193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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