View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12106_low_2 (Length: 298)

Name: NF12106_low_2
Description: NF12106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12106_low_2
NF12106_low_2
[»] chr3 (10 HSPs)
chr3 (97-280)||(7787940-7788124)
chr3 (2-96)||(5488919-5489013)
chr3 (3-96)||(5501767-5501860)
chr3 (3-94)||(5524631-5524722)
chr3 (3-94)||(20342460-20342551)
chr3 (3-96)||(5445141-5445234)
chr3 (3-96)||(5855275-5855368)
chr3 (2-89)||(5483469-5483556)
chr3 (3-57)||(5453724-5453778)
chr3 (3-57)||(5803735-5803789)
[»] chr6 (1 HSPs)
chr6 (3-57)||(25810617-25810671)


Alignment Details
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 97 - 280
Target Start/End: Complemental strand, 7788124 - 7787940
Alignment:
Q  97 tttaagtcaacacatttttagtgtgattcacccgattccttcgcttcctatatattcacccatctatgc-gacgattcccccaatcattctttctgccat 195  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  7788124 tttaaatcaacacatttttagtgtgattcacccaattccttcgcttcctatatattcacccatctatgccgacgattctcccaatcattctttctgccat 7788025  T
Q  196 gcgcttgaattttgagcatgagaaggttaggtattttaccaagacgcggtgtaaaattaactgagaatcaagaaccgacgaggat 280  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  7788024 gcgcttgaattttgagcatgagaaggttaggtattttaccaagatgcggtgtaaaattaactgagaatcaagaaccaacgaggat 7787940  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 5488919 - 5489013
Alignment:
Q  2 catcaagaagaatattgcttgttttgatatttctatgcatgattcttagtgtagaaccttgacgaagatacagaagccctcaagcaattccatca 96  Q
    ||||||||||||||||||||||||| |||| |||||| |||||||||||||||||| ||||| |||||||||  ||||||| |||||||||||||    
T  5488919 catcaagaagaatattgcttgttttcatatctctatgtatgattcttagtgtagaatcttgatgaagatacaacagccctcgagcaattccatca 5489013  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 5501767 - 5501860
Alignment:
Q  3 atcaagaagaatattgcttgttttgatatttctatgcatgattcttagtgtagaaccttgacgaagatacagaagccctcaagcaattccatca 96  Q
    |||||||||||||||||||||||| |||| |||||| |||||||||||||||||| ||||| |||||||||  ||||||| |||||||||||||    
T  5501767 atcaagaagaatattgcttgttttcatatctctatgtatgattcttagtgtagaatcttgatgaagatacaacagccctcgagcaattccatca 5501860  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 5524631 - 5524722
Alignment:
Q  3 atcaagaagaatattgcttgttttgatatttctatgcatgattcttagtgtagaaccttgacgaagatacagaagccctcaagcaattccat 94  Q
    ||||||||||||||||||||| |||| || |||||| ||||||||| |||||||| ||||| ||||||| || ||||||| |||||||||||    
T  5524631 atcaagaagaatattgcttgtcttgagatctctatgtatgattctttgtgtagaatcttgatgaagatatagcagccctcgagcaattccat 5524722  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 20342460 - 20342551
Alignment:
Q  3 atcaagaagaatattgcttgttttgatatttctatgcatgattcttagtgtagaaccttgacgaagatacagaagccctcaagcaattccat 94  Q
    |||||||||||| |||||||| |||| || |||||| ||||||| |||||||||| ||||| | |||||||||||||| | |||||| ||||    
T  20342460 atcaagaagaatgttgcttgtcttgagatctctatgtatgattcgtagtgtagaatcttgatggagatacagaagcccccgagcaataccat 20342551  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 5445141 - 5445234
Alignment:
Q  3 atcaagaagaatattgcttgttttgatatttctatgcatgattcttagtgtagaaccttgacgaagatacagaagccctcaagcaattccatca 96  Q
    ||||||||||||||||||||| |||| || |||||| |||||||||| ||||||| | ||| | |||||||| ||||| | |||||| ||||||    
T  5445141 atcaagaagaatattgcttgtcttgagatctctatgaatgattcttaatgtagaatcctgatggagatacagcagcccccgagcaataccatca 5445234  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 5855368 - 5855275
Alignment:
Q  3 atcaagaagaatattgcttgttttgatatttctatgcatgattcttagtgtagaaccttgacgaagatacagaagccctcaagcaattccatca 96  Q
    ||||||||||||||||||||| |||| || |||||| || ||||||||||||||| ||||| | |||||||  ||||| | |||||| ||||||    
T  5855368 atcaagaagaatattgcttgtcttgagatctctatgtattattcttagtgtagaatcttgatgcagatacaacagcccacgagcaatcccatca 5855275  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 5483469 - 5483556
Alignment:
Q  2 catcaagaagaatattgcttgttttgatatttctatgcatgattcttagtgtagaaccttgacgaagatacagaagccctcaagcaat 89  Q
    |||||||||||||||||||||| |||| || |||||| |||||||||| ||||||| | ||| | |||||||| ||||| | ||||||    
T  5483469 catcaagaagaatattgcttgtcttgagatctctatgtatgattcttaatgtagaatcctgatggagatacagcagcccccgagcaat 5483556  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 5453724 - 5453778
Alignment:
Q  3 atcaagaagaatattgcttgttttgatatttctatgcatgattcttagtgtagaa 57  Q
    ||||||||||||||||||||| |||| || |||||| |||||||||| |||||||    
T  5453724 atcaagaagaatattgcttgtcttgagatctctatgaatgattcttaatgtagaa 5453778  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 5803789 - 5803735
Alignment:
Q  3 atcaagaagaatattgcttgttttgatatttctatgcatgattcttagtgtagaa 57  Q
    ||||||||| ||||||||||| |||| || |||||| ||||||||||||||||||    
T  5803789 atcaagaagtatattgcttgtcttgagatctctatgtatgattcttagtgtagaa 5803735  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 25810671 - 25810617
Alignment:
Q  3 atcaagaagaatattgcttgttttgatatttctatgcatgattcttagtgtagaa 57  Q
    ||||||||||||||||||||| |||| || |||||| |||||||||| |||||||    
T  25810671 atcaagaagaatattgcttgtcttgagatctctatgaatgattcttaatgtagaa 25810617  T

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