View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12107_high_3 (Length: 364)
Name: NF12107_high_3
Description: NF12107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12107_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 46826621 - 46826831
Alignment:
| Q |
15 |
cagagaaagattgggtctgcttctgaggcagcagggaattgtagtggaggcaaacttcatttcataactacatcataacttttgcttaagggtgatataa |
114 |
Q |
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| T |
46826621 |
cagagaaagattgggtctgcttctgaggcagcagggaattgtagtggaggcaaacttcatttcataactacatcataacttttgcttaagggtgatataa |
46826720 |
T |
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| Q |
115 |
tcttttgaaattttgattatatggagtgctaaaccacaatacaacatgctactacttctcaaactaacaaatnnnnnnntgtcaaaaatacatattgtta |
214 |
Q |
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| T |
46826721 |
tcttttgaaattttgattatatggagtgctaaaccacaatacaacatgctactacttctcaaactaacaaataaaaaaatatcaaaaatacatattgtta |
46826820 |
T |
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| Q |
215 |
aggctaaaatg |
225 |
Q |
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||||||||||| |
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| T |
46826821 |
aggctaaaatg |
46826831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 220 - 345
Target Start/End: Complemental strand, 9859373 - 9859247
Alignment:
| Q |
220 |
aaaatgtttctttacatgtttacggaaag-ataatcggaagtggaaggcggattcttcttctttttatatagtttgaagtgcatacaattctctcattgc |
318 |
Q |
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| T |
9859373 |
aaaatgtttctttacagatttacaaaaaggatatttggaagtggaacgcggatccttcttcttgttacacagttcaaagtgcatacaatactttcattgc |
9859274 |
T |
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| Q |
319 |
tcaggttcatgttgataatgtggtggc |
345 |
Q |
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| T |
9859273 |
tcaggtttatgttgataatgtggtggc |
9859247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 220 - 343
Target Start/End: Complemental strand, 40617364 - 40617240
Alignment:
| Q |
220 |
aaaatgtttctttacatgtttacggaaag-ataatcggaagtggaaggcggattcttcttctttttatatagtttgaagtgcatacaattctctcattgc |
318 |
Q |
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| T |
40617364 |
aaaatgtttcttttcaggttcacagaaaggatatttgaaagtggaatgtggatccttcttcttgttatacagttcaaagtgcatacaatactctcattgc |
40617265 |
T |
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| Q |
319 |
tcaggttcatgttgataatgtggtg |
343 |
Q |
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| T |
40617264 |
gcaggttcatgttgataatgtggtg |
40617240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 345
Target Start/End: Original strand, 38342469 - 38342559
Alignment:
| Q |
255 |
ggaagtggaaggcggattcttcttctttttatatagtttgaagtgcatacaattctctcattgctcaggttcatgttgataatgtggtggc |
345 |
Q |
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| T |
38342469 |
ggaagtggaacgcggatccttcttcttgttacacagttcagagtgcatacaatacgctcatttctcaggtccaagtcgataatgtgatggc |
38342559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 338
Target Start/End: Complemental strand, 842178 - 842059
Alignment:
| Q |
220 |
aaaatgtttctttacatgtttacggaaag-ataatcggaagtggaaggcggattcttcttctttttatatagtttgaagtgcatacaattctctcattgc |
318 |
Q |
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||||||||||||| || ||| || ||||| ||| | |||||||||| |||||| ||||||||| ||||| |||| ||||||||||||| |||||| ||| |
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| T |
842178 |
aaaatgtttcttttcaggttcacagaaaggatatttggaagtggaatgcggatccttcttcttgttatacagttcaaagtgcatacaatactctcactgc |
842079 |
T |
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| Q |
319 |
tcaggttcatgttgataatg |
338 |
Q |
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| T |
842078 |
gcatgttcatattgacaatg |
842059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 312
Target Start/End: Complemental strand, 40427526 - 40427462
Alignment:
| Q |
248 |
gataatcggaagtggaaggcggattcttcttctttttatatagtttgaagtgcatacaattctct |
312 |
Q |
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|||||| | |||||||||||| |||||||||| | |||| |||| ||||||||||||||||||| |
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| T |
40427526 |
gataattgaaagtggaaggcgaattcttcttcgtgctatacagttcgaagtgcatacaattctct |
40427462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 345
Target Start/End: Complemental strand, 32533694 - 32533568
Alignment:
| Q |
220 |
aaaatgtttctttacatgtttacggaaag-ataatcggaagtggaaggcggattcttcttctttttatatagtttgaagtgcatacaattctctcattgc |
318 |
Q |
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||||||||||||| || ||| || ||||| ||| | | |||||||| || ||| ||||||||| |||| |||| |||||||||||| || |||||| |
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| T |
32533694 |
aaaatgtttcttttcaggttcacagaaaggatatttgaaagtggaatgcagatccttcttcttgctatacagttcacagtgcatacaatactttcattgt |
32533595 |
T |
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| Q |
319 |
tcaggttcatgttgataatgtggtggc |
345 |
Q |
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|||||||||||||||||||||||||| |
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| T |
32533594 |
gcaggttcatgttgataatgtggtggc |
32533568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 343
Target Start/End: Complemental strand, 7961738 - 7961650
Alignment:
| Q |
255 |
ggaagtggaaggcggattcttcttctttttatatagtttgaagtgcatacaattctctcattgctcaggttcatgttgataatgtggtg |
343 |
Q |
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|||||||||| |||||| || |||| | ||||| ||| ||||||| ||| | ||||||| || |||||||||||||||||||||||| |
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| T |
7961738 |
ggaagtggaacgcggatcctacttcctgttatacagtaaaaagtgcagacactactctcatggcgcaggttcatgttgataatgtggtg |
7961650 |
T |
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