View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12107_high_4 (Length: 234)

Name: NF12107_high_4
Description: NF12107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12107_high_4
NF12107_high_4
[»] chr6 (12 HSPs)
chr6 (92-219)||(34873028-34873156)
chr6 (17-89)||(1376479-1376551)
chr6 (17-89)||(1384227-1384299)
chr6 (17-84)||(27612987-27613054)
chr6 (17-84)||(33651133-33651200)
chr6 (17-87)||(13423081-13423151)
chr6 (24-89)||(9082950-9083015)
chr6 (28-88)||(16337142-16337202)
chr6 (22-89)||(28630216-28630283)
chr6 (107-151)||(9919200-9919244)
chr6 (27-87)||(31760176-31760236)
chr6 (17-89)||(31869180-31869252)
[»] chr1 (18 HSPs)
chr1 (17-90)||(12999708-12999781)
chr1 (17-89)||(30973665-30973737)
chr1 (17-82)||(49446687-49446752)
chr1 (17-89)||(30536100-30536172)
chr1 (17-87)||(49931666-49931736)
chr1 (18-80)||(49020301-49020363)
chr1 (17-90)||(33076232-33076305)
chr1 (17-82)||(29359856-29359921)
chr1 (17-82)||(34817938-34818003)
chr1 (23-89)||(26501173-26501239)
chr1 (22-90)||(11947913-11947981)
chr1 (21-83)||(4629641-4629703)
chr1 (17-82)||(29877410-29877475)
chr1 (22-91)||(30519509-30519578)
chr1 (17-82)||(32831061-32831126)
chr1 (22-92)||(11597754-11597824)
chr1 (17-82)||(30745099-30745164)
chr1 (17-82)||(30766550-30766615)
[»] chr3 (18 HSPs)
chr3 (17-89)||(49761073-49761145)
chr3 (17-89)||(37894128-37894200)
chr3 (17-89)||(52100373-52100445)
chr3 (17-87)||(48944599-48944669)
chr3 (17-88)||(16479745-16479816)
chr3 (22-90)||(54099242-54099310)
chr3 (17-82)||(1436929-1436994)
chr3 (17-82)||(51698971-51699036)
chr3 (21-85)||(23868869-23868933)
chr3 (17-89)||(45186438-45186510)
chr3 (17-89)||(52485585-52485657)
chr3 (17-90)||(33796379-33796452)
chr3 (22-82)||(36755944-36756004)
chr3 (27-90)||(26772492-26772555)
chr3 (22-73)||(26550355-26550406)
chr3 (17-90)||(34592177-34592250)
chr3 (54-86)||(51771354-51771386)
chr3 (22-90)||(52089820-52089888)
[»] chr8 (20 HSPs)
chr8 (17-92)||(43715987-43716062)
chr8 (17-89)||(33539518-33539590)
chr8 (22-90)||(67046-67114)
chr8 (17-88)||(25830133-25830204)
chr8 (17-90)||(12656035-12656108)
chr8 (31-90)||(35792165-35792224)
chr8 (17-82)||(5574368-5574433)
chr8 (17-82)||(6440194-6440259)
chr8 (17-82)||(35067273-35067338)
chr8 (17-90)||(3270766-3270839)
chr8 (17-82)||(39453210-39453275)
chr8 (17-82)||(41639691-41639756)
chr8 (20-88)||(12339046-12339113)
chr8 (17-90)||(36969560-36969633)
chr8 (17-82)||(42786551-42786616)
chr8 (22-82)||(3413086-3413146)
chr8 (17-87)||(7814476-7814551)
chr8 (17-79)||(33100367-33100429)
chr8 (22-82)||(45405649-45405709)
chr8 (54-87)||(7795188-7795221)
[»] chr2 (17 HSPs)
chr2 (22-90)||(3771489-3771557)
chr2 (17-89)||(45420248-45420320)
chr2 (17-89)||(12784283-12784355)
chr2 (17-89)||(17999564-17999636)
chr2 (22-85)||(4657419-4657482)
chr2 (17-82)||(21738511-21738576)
chr2 (17-82)||(26290744-26290809)
chr2 (17-88)||(1040626-1040697)
chr2 (17-82)||(7084608-7084673)
chr2 (17-89)||(29449324-29449395)
chr2 (18-89)||(40700309-40700380)
chr2 (17-90)||(4319819-4319892)
chr2 (17-82)||(19843597-19843662)
chr2 (17-82)||(42532632-42532697)
chr2 (17-82)||(43658605-43658670)
chr2 (22-82)||(12070965-12071025)
chr2 (17-89)||(40357973-40358045)
[»] chr4 (17 HSPs)
chr4 (17-89)||(1795868-1795940)
chr4 (17-89)||(49585107-49585179)
chr4 (17-88)||(11546788-11546859)
chr4 (17-80)||(48649631-48649694)
chr4 (17-88)||(50980703-50980774)
chr4 (17-88)||(55609052-55609123)
chr4 (17-87)||(193645-193715)
chr4 (17-88)||(44257618-44257688)
chr4 (17-82)||(16019589-16019654)
chr4 (17-88)||(19165319-19165391)
chr4 (22-84)||(32224048-32224110)
chr4 (17-89)||(36123347-36123418)
chr4 (22-82)||(47015123-47015183)
chr4 (22-82)||(15522472-15522532)
chr4 (17-73)||(46665097-46665153)
chr4 (17-88)||(34363664-34363735)
chr4 (21-89)||(624198-624266)
[»] scaffold0053 (1 HSPs)
scaffold0053 (17-88)||(12610-12681)
[»] chr5 (13 HSPs)
chr5 (17-88)||(22098368-22098439)
chr5 (168-219)||(27947316-27947367)
chr5 (17-91)||(16690612-16690686)
chr5 (22-88)||(38293245-38293311)
chr5 (17-82)||(38493738-38493803)
chr5 (22-73)||(26686996-26687047)
chr5 (22-73)||(26956727-26956778)
chr5 (17-87)||(32639156-32639226)
chr5 (22-80)||(34940751-34940809)
chr5 (17-82)||(9168061-9168125)
chr5 (17-80)||(14321850-14321913)
chr5 (22-85)||(40364686-40364749)
chr5 (17-82)||(884554-884619)
[»] chr7 (10 HSPs)
chr7 (17-82)||(35822868-35822933)
chr7 (17-79)||(44496699-44496761)
chr7 (17-88)||(31398237-31398308)
chr7 (17-80)||(41590415-41590478)
chr7 (17-90)||(26018153-26018226)
chr7 (53-89)||(48145661-48145697)
chr7 (22-82)||(41430045-41430105)
chr7 (22-82)||(42584920-42584980)
chr7 (21-79)||(44651126-44651184)
chr7 (22-82)||(36352477-36352538)
[»] scaffold0687 (1 HSPs)
scaffold0687 (17-87)||(7172-7247)
[»] scaffold0662 (1 HSPs)
scaffold0662 (22-82)||(1262-1322)


Alignment Details
Target: chr6 (Bit Score: 101; Significance: 3e-50; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 92 - 219
Target Start/End: Complemental strand, 34873156 - 34873028
Alignment:
Q  92 aacaatggctaatatata-tctatcatctaccttagtttactacggagacatcagttctatttcataattaaaaaccatacatgccgtttgtttttgaaa 190  Q
    |||||||||||||| ||| ||||||| ||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  34873156 aacaatggctaatacataatctatcaactaccttagtttactacggaggcatcagttctatttcataatcaaaatccatacatgccgtttgtttttgaaa 34873057  T
Q  191 ttctcgtctttgcattatcatttcatctc 219  Q
    |||||||||||||||||||||||||||||    
T  34873056 ttctcgtctttgcattatcatttcatctc 34873028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 1376479 - 1376551
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 89  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1376479 catatttttctttgtaaaaatgtggttgtccatttagttgtcaagcaaattgatgttcaaataacactactct 1376551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 1384227 - 1384299
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 89  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1384227 catatttttctttgtaaaaatgtggttgtccatttagttgtcaagcaaattgatgttcaaataacactactct 1384299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 27612987 - 27613054
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacact 84  Q
    |||||||||||||||||| || |||||||| ||||  ||||||| ||||| |||||||||||||||||    
T  27612987 catatttttctttgtaaacatatggttgtccatttgattgtcaaacaaatagatgttcaaataacact 27613054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 33651133 - 33651200
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacact 84  Q
    |||| |||||||||||||||| |||||||| ||||  ||||||| ||||| |||||||||||||||||    
T  33651133 cataattttctttgtaaaaatatggttgtctatttgattgtcaaacaaatggatgttcaaataacact 33651200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 13423081 - 13423151
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactact 87  Q
    ||||||||||||||||||||| | |||||| | || ||||||||  |||| ||||||||||||||||||||    
T  13423081 catatttttctttgtaaaaatatagttgtccacttggttgtcaaataaatggatgttcaaataacactact 13423151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 9083015 - 9082950
Alignment:
Q  24 ttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 89  Q
    |||| |||||||||||||||||| |||| ||| |||   |||||||||||||||||||||||||||    
T  9083015 ttctgtgtaaaaatgtggttgtccatttggttatcacataaattgatgttcaaataacactactct 9082950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 16337142 - 16337202
Alignment:
Q  28 ttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactc 88  Q
    |||||||||| |||||||| |||| ||||||||  |||| |||||||||||||||||||||    
T  16337142 ttgtaaaaatatggttgtctatttggttgtcaattaaatggatgttcaaataacactactc 16337202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 28630216 - 28630283
Alignment:
Q  22 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 89  Q
    |||| ||||||||||| |||||||| ||||||||||||  ||||| |||||||| |||||| ||||||    
T  28630216 ttttatttgtaaaaatatggttgtctatttagttgtcacacaaatagatgttcatataacattactct 28630283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 9919200 - 9919244
Alignment:
Q  107 atatctatcatctaccttagtttactacggagacatcagttctat 151  Q
    |||||||||| ||||||||||||||||||||| ||||| ||||||    
T  9919200 atatctatcaactaccttagtttactacggaggcatcacttctat 9919244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 31760236 - 31760176
Alignment:
Q  27 tttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactact 87  Q
    |||||| ||| ||||||||  |||| |||||||| ||||| ||||||||||||||||||||    
T  31760236 tttgtataaacgtggttgtttatttggttgtcaaacaaatggatgttcaaataacactact 31760176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 31869180 - 31869252
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 89  Q
    |||||||| |||||||||||   |  |||| ||||  ||||||||||||| ||||||||||||||||||||||    
T  31869180 catattttcctttgtaaaaacaagagtgtctatttgattgtcaagcaaatagatgttcaaataacactactct 31869252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 12999781 - 12999708
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactcta 90  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12999781 catatttttctttgtaaaaatgtggttgtccatttagttgtcaagcaaattgatgttcaaataacactactcta 12999708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 30973665 - 30973737
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 89  Q
    |||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30973665 catacttttctttgtaaaaatgtgattgtccatttagttgtcaagcaaattgatgttcaaataacactactct 30973737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 49446752 - 49446687
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  49446752 catatttttctttgtaaaaatgtgattgtccatttagttgtcaagcaaattgatgttcaaataaca 49446687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 30536100 - 30536172
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 89  Q
    |||| |||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||    
T  30536100 catacttttctttgtaaaaatgtggttgtccgtttagttgttaagcaaattgatgttcaaataacactactct 30536172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 49931666 - 49931736
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactact 87  Q
    |||| ||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  49931666 catacttttctttggaaaaatgtggttgtccatttagttatcaagcaaattgatgttcaaataacactact 49931736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 49020363 - 49020301
Alignment:
Q  18 atatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataa 80  Q
    |||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||    
T  49020363 atatttttctttgtaaaaatatggttgtcaatttggttgtcaaccaaattgatgttcaaataa 49020301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 33076232 - 33076305
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactcta 90  Q
    |||| |||||||||||||| |||||||||| ||||| || |||||||||||||||||||||||||||| |||||    
T  33076232 cataattttctttgtaaaattgtggttgtccatttaattatcaagcaaattgatgttcaaataacactgctcta 33076305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 29359856 - 29359921
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    |||| |||||||| ||||||| ||||||||||| | |||||||| |||||||||||||||||||||    
T  29359856 catacttttctttataaaaatatggttgtcaatgtggttgtcaatcaaattgatgttcaaataaca 29359921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 34818003 - 34817938
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    ||||||||||||||||||||| ||||||||||| |  |||||||  ||||||||||||||||||||    
T  34818003 catatttttctttgtaaaaatatggttgtcaatatgattgtcaactaaattgatgttcaaataaca 34817938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 26501239 - 26501173
Alignment:
Q  23 tttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 89  Q
    ||||||| ||||||||||||||||||||| ||||| | | | ||||||||||||||||||| |||||    
T  26501239 tttctttctaaaaatgtggttgtcaatttggttgtaacgtacattgatgttcaaataacaccactct 26501173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 11947913 - 11947981
Alignment:
Q  22 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactcta 90  Q
    |||| ||||||||||| |||||||| ||||||||||||  ||||| |||||||| |||||| |||||||    
T  11947913 ttttatttgtaaaaatatggttgtctatttagttgtcacacaaatagatgttcatataacattactcta 11947981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 4629703 - 4629641
Alignment:
Q  21 tttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacac 83  Q
    |||||||||||||| ||||||||||||| | ||||||||| | ||| | ||||||||||||||    
T  4629703 tttttctttgtaaagatgtggttgtcaaataagttgtcaatctaatagttgttcaaataacac 4629641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 29877410 - 29877475
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    |||| |||||||||||||||| |||||||| || |  |||||||  ||||||||||||||||||||    
T  29877410 cataattttctttgtaaaaatatggttgtccatatgattgtcaataaaattgatgttcaaataaca 29877475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 30519578 - 30519509
Alignment:
Q  22 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactctag 91  Q
    |||||||||||||||  |||||||| || | |||||||| || |||||||||||||||||| | ||||||    
T  30519578 ttttctttgtaaaaagatggttgtccatgtggttgtcaatcacattgatgttcaaataacattgctctag 30519509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 32831126 - 32831061
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    |||| |||||||||||||||  |||||||| |||| ||||||| |||||| |||||||||| ||||    
T  32831126 catacttttctttgtaaaaacatggttgtctatttggttgtcaggcaaatagatgttcaaacaaca 32831061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 11597754 - 11597824
Alignment:
Q  22 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactctaga 92  Q
    |||||||||||||  | ||||||||   | ||||||||||||||| ||||||||||||||||  |||||||    
T  11597754 ttttctttgtaaatctatggttgtcccataagttgtcaagcaaatggatgttcaaataacacacctctaga 11597824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 30745099 - 30745164
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    |||| |||||||||||| | | |||||||| || | |||||||| |||||| ||||||||||||||    
T  30745099 cataattttctttgtaagagtatggttgtctatatggttgtcaatcaaattaatgttcaaataaca 30745164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 30766550 - 30766615
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    |||| |||||||||||| | | |||||||| || | |||||||| |||||| ||||||||||||||    
T  30766550 cataattttctttgtaagagtatggttgtctatatggttgtcaatcaaattaatgttcaaataaca 30766615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 49761145 - 49761073
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 89  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  49761145 catatttttctttgtaaaaatgtggttgtccatttagttgtcaagcaaattgatgttgaaataacactactct 49761073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 37894200 - 37894128
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 89  Q
    |||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37894200 catacttttcttggtaaaaatgtggttgtccatttagttgtcaagcaaattgatgttcaaataacactactct 37894128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 52100373 - 52100445
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 89  Q
    ||||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  52100373 catatttttctttgtaaaaatatgattgtccatttaattgtcaagcaaattgatgttcaaataacactactct 52100445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 48944669 - 48944599
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactact 87  Q
    ||||||||||||||||||||| || ||||  ||||||||||||||||||||||||||||||||||||||||    
T  48944669 catatttttctttgtaaaaatatgattgttcatttagttgtcaagcaaattgatgttcaaataacactact 48944599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 16479745 - 16479816
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactc 88  Q
    ||||||||||||||||||||   ||||||| |||| |||||||||||||| |||||||||||||||||||||    
T  16479745 catatttttctttgtaaaaacaaggttgtctatttggttgtcaagcaaatagatgttcaaataacactactc 16479816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 54099310 - 54099242
Alignment:
Q  22 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactcta 90  Q
    |||||||||||||||| || |||||||| || ||||||| ||||||||||||||||||||| |||||||    
T  54099310 ttttctttgtaaaaatatgattgtcaatgtaattgtcaaccaaattgatgttcaaataacattactcta 54099242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 1436929 - 1436994
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    |||| |||||||||||||||| ||||||||||| | ||||| || |||||||||||||||||||||    
T  1436929 catacttttctttgtaaaaatatggttgtcaatgtggttgtaaaccaaattgatgttcaaataaca 1436994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 51698971 - 51699036
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    |||| |||||||||||| ||| ||||||||||| | |||||||| |||||||||||||||||||||    
T  51698971 catacttttctttgtaagaatatggttgtcaatgtggttgtcaaccaaattgatgttcaaataaca 51699036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 23868933 - 23868869
Alignment:
Q  21 tttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacacta 85  Q
    |||||| |||||||||| || ||||| |||| |||||||||||||| ||||||||||||||||||    
T  23868933 tttttccttgtaaaaatatgattgtctatttggttgtcaagcaaatagatgttcaaataacacta 23868869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 45186510 - 45186438
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 89  Q
    |||| ||||| |||||||| | |||||||| |||| |||||||| ||||||||||||| ||||||||||||||    
T  45186510 catacttttcgttgtaaaagtatggttgtccatttggttgtcaaacaaattgatgttcgaataacactactct 45186438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 52485585 - 52485657
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 89  Q
    |||| |||||||||||||||| |||||||| |||  |||||||| ||||| |||||||||||||||| |||||    
T  52485585 catacttttctttgtaaaaatatggttgtccattaggttgtcaaacaaatagatgttcaaataacacaactct 52485657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 33796379 - 33796452
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactcta 90  Q
    |||| |||||||| ||||||| ||||||||||| |  ||||||| ||||||||| ||||||||||| |||||||    
T  33796379 catacttttctttataaaaatatggttgtcaatgtgattgtcaaccaaattgattttcaaataacattactcta 33796452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 36756004 - 36755944
Alignment:
Q  22 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    |||||||||||||||| ||||||||||| |  ||||||| ||||||||| |||||||||||    
T  36756004 ttttctttgtaaaaatatggttgtcaatgtgattgtcaatcaaattgatattcaaataaca 36755944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 26772492 - 26772555
Alignment:
Q  27 tttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactcta 90  Q
    |||||||||||  ||||||| |||| | |||||| ||||| |||||||||||||||||||||||    
T  26772492 tttgtaaaaataaggttgtctatttggatgtcaaacaaatagatgttcaaataacactactcta 26772555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 26550355 - 26550406
Alignment:
Q  22 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgtt 73  Q
    ||||||||||||||||||| ||||| |||| |||||||  ||||||||||||    
T  26550355 ttttctttgtaaaaatgtgattgtccatttggttgtcacacaaattgatgtt 26550406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 34592177 - 34592250
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactcta 90  Q
    |||| |||||||||||||||    |||||| ||||   |||||| ||||| |||||||||||||||||||||||    
T  34592177 catacttttctttgtaaaaacaatgttgtctatttgactgtcaaacaaatagatgttcaaataacactactcta 34592250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 51771386 - 51771354
Alignment:
Q  54 ttgtcaagcaaattgatgttcaaataacactac 86  Q
    ||||||||||||| |||||||||||||||||||    
T  51771386 ttgtcaagcaaatagatgttcaaataacactac 51771354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 52089888 - 52089820
Alignment:
Q  22 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactcta 90  Q
    ||||||||||||||||    ||||| |||||||||||||   ||| |||||| ||||||||||||||||    
T  52089888 ttttctttgtaaaaataaaattgtctatttagttgtcaaattaatagatgtttaaataacactactcta 52089820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 43715987 - 43716062
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactctaga 92  Q
    |||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43715987 catacttttcttggtaaaaatgtggttgtccatttagttgtcaagcaaattgatgttcaaataacactactctaga 43716062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 33539518 - 33539590
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 89  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33539518 catacttttctttgaaaaaatgtggttgtccatttagttgtcaagcaaattgatgttcaaataacactactct 33539590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 67114 - 67046
Alignment:
Q  22 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactcta 90  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||    
T  67114 ttttctttgtaaaaatgtggttgtctatttggttgtcaagcaaattaatgttcaaataacactactcta 67046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 25830204 - 25830133
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactc 88  Q
    |||| ||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||    
T  25830204 catacttttctttgtaaaaatgtggttgtccatttagttgttaaacaaattgatgttcaaataacactactc 25830133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 12656035 - 12656108
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactcta 90  Q
    |||| |||||||||||||||  |||||||| |||| |||||||||||||| |||||||||||||||||||||||    
T  12656035 catacttttctttgtaaaaacatggttgtctatttggttgtcaagcaaatagatgttcaaataacactactcta 12656108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 35792165 - 35792224
Alignment:
Q  31 taaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactcta 90  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||    
T  35792165 taaaaatgtggttgtccatttagttgtcaagcaaattggtgttcaaataacactcctcta 35792224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 5574368 - 5574433
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    |||| |||||||||||||||| ||| ||||||| |||||||||| |||||||||||||||||||||    
T  5574368 catacttttctttgtaaaaatatgggtgtcaatatagttgtcaaccaaattgatgttcaaataaca 5574433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 6440194 - 6440259
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    |||| |||||||||||||||| ||||||||||||| |||||||| ||| |||||||||||||||||    
T  6440194 catacttttctttgtaaaaatatggttgtcaatttggttgtcaaccaagttgatgttcaaataaca 6440259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 35067273 - 35067338
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    |||| |||||||||||||||| ||||||||||| | |||||||| |||||||||||||||||||||    
T  35067273 catacttttctttgtaaaaatatggttgtcaatgtggttgtcaaccaaattgatgttcaaataaca 35067338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 3270839 - 3270766
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactcta 90  Q
    |||| |||| ||| ||||| | |||||||||||||||||||||| ||| ||||||||||||||||| |||||||    
T  3270839 catacttttgtttataaaattatggttgtcaatttagttgtcaaccaagttgatgttcaaataacattactcta 3270766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 39453275 - 39453210
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    |||| |||||||||||||||| || |||||||| | |||||||| |||||||||||||||||||||    
T  39453275 cataattttctttgtaaaaatatgattgtcaatgtggttgtcaatcaaattgatgttcaaataaca 39453210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 41639756 - 41639691
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    |||| |||||||||||||||| ||||||||||  | |||||||| |||||||||||||||||||||    
T  41639756 catacttttctttgtaaaaatatggttgtcaacgtggttgtcaaccaaattgatgttcaaataaca 41639691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 12339113 - 12339046
Alignment:
Q  20 atttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactc 88  Q
    |||||||||||||||||| |||||||  ||||||||||||  |||||||||| ||||||||||||||||    
T  12339113 atttttctttgtaaaaatatggttgttcatttagttgtcacacaaattgatg-tcaaataacactactc 12339046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 36969633 - 36969560
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactcta 90  Q
    ||||| ||||||||||||||| ||||||||   | ||||||||| ||||| |||||||||||||||| ||||||    
T  36969633 catatatttctttgtaaaaatatggttgtcgcataagttgtcaaacaaatggatgttcaaataacacaactcta 36969560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 42786616 - 42786551
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    |||||||||||||||||||   || |||||||||| |||||||| ||| |||||||||||||||||    
T  42786616 catatttttctttgtaaaatcatgattgtcaatttggttgtcaaccaagttgatgttcaaataaca 42786551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 3413146 - 3413086
Alignment:
Q  22 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    |||||||||||||||| ||  ||||||| | |||||||| |||||||||||||||||||||    
T  3413146 ttttctttgtaaaaatatgactgtcaatgttgttgtcaaccaaattgatgttcaaataaca 3413086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 7814551 - 7814476
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtca-------agcaaattgatgttcaaataacactact 87  Q
    |||| |||||||||||||  |||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  7814551 catacttttctttgtaaa--tgtggttgtcaatttagttgtcatttgtcaagcaaattgatgttcaaataacactact 7814476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 33100429 - 33100367
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaata 79  Q
    |||| ||||||||||||||||  ||||||| |||| |||||||| ||||| ||||||||||||    
T  33100429 catacttttctttgtaaaaataaggttgtctatttggttgtcaaacaaatggatgttcaaata 33100367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 45405649 - 45405709
Alignment:
Q  22 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    |||||||||||||||| | |||||| || | |||||||| || ||||||||||||||||||    
T  45405649 ttttctttgtaaaaatatagttgtccatgtggttgtcaatcacattgatgttcaaataaca 45405709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 7795221 - 7795188
Alignment:
Q  54 ttgtcaagcaaattgatgttcaaataacactact 87  Q
    |||||||||||||||||||||| |||||||||||    
T  7795221 ttgtcaagcaaattgatgttcatataacactact 7795188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 3771489 - 3771557
Alignment:
Q  22 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactcta 90  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  3771489 ttttctttgtaaaaatgtggttgtccatttagttgtcaagcaaattgacgttcaaataacactactcta 3771557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 45420248 - 45420320
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 89  Q
    |||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||    
T  45420248 catatttttctttgtaaaaatgtggttgtctatttagttgtcaaataaattgatgttcaaataacactactct 45420320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 12784355 - 12784283
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 89  Q
    ||||||||||||||||||||  |||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  12784355 catatttttctttgtaaaaacatggttgtctatttagttgtcaagcaaatagatgttcaaataacactactct 12784283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 17999636 - 17999564
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 89  Q
    ||||||||||||||||||||   ||||||| ||||||||||||| ||||| ||||||||||||||||||||||    
T  17999636 catatttttctttgtaaaaacaaggttgtctatttagttgtcaaacaaatagatgttcaaataacactactct 17999564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 4657419 - 4657482
Alignment:
Q  22 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacacta 85  Q
    ||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||| ||||    
T  4657419 ttttctttgtaaaaatgtgattgtccatttggttgtcaagcaaattgatgttcaaataatacta 4657482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 21738576 - 21738511
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    ||||||||||||||||||||| || |||||||| | |||||||| |||||||||||||||||||||    
T  21738576 catatttttctttgtaaaaatatgattgtcaatgtcgttgtcaaccaaattgatgttcaaataaca 21738511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 26290809 - 26290744
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    ||||||||||||||||||||| || |||||||| ||||| |||| |||||||||||||||||||||    
T  26290809 catatttttctttgtaaaaatatgattgtcaatgtagttatcaaccaaattgatgttcaaataaca 26290744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 1040626 - 1040697
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactc 88  Q
    |||| ||||||||||||||| ||| ||||| ||||  ||||||||||||| |||||||||||||||||||||    
T  1040626 catacttttctttgtaaaaacgtgattgtctatttgattgtcaagcaaatagatgttcaaataacactactc 1040697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 7084673 - 7084608
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    |||| |||||||||||||||| || |||||||| | |||||||| |||||||||||||||||||||    
T  7084673 catacttttctttgtaaaaatatgattgtcaatgtggttgtcaaccaaattgatgttcaaataaca 7084608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 29449324 - 29449395
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 89  Q
    |||| |||||||||||||||  || ||||| |||| |||||||||||||| ||||||||||||||||||||||    
T  29449324 catacttttctttgtaaaaacatg-ttgtctatttggttgtcaagcaaatagatgttcaaataacactactct 29449395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 40700309 - 40700380
Alignment:
Q  18 atatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 89  Q
    |||||||| ||| ||||||  || ||||| |||| |||||||||||||| ||||||||||||||||||||||    
T  40700309 atatttttttttataaaaacatgattgtctatttggttgtcaagcaaatagatgttcaaataacactactct 40700380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 4319819 - 4319892
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactcta 90  Q
    |||| |||||||| ||||||  ||  |||| ||||| |||||||| |||| |||||||||||||||||||||||    
T  4319819 cataattttctttataaaaacatgactgtctatttaattgtcaagtaaatagatgttcaaataacactactcta 4319892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 19843597 - 19843662
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    |||| |||||||||||||||| |  |||||||| |  ||||||| |||||||||||||||||||||    
T  19843597 catacttttctttgtaaaaatataattgtcaatatgattgtcaaccaaattgatgttcaaataaca 19843662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 42532697 - 42532632
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    ||||||||||||| ||||||  | || ||| |||| |||||||||||||| |||||||||||||||    
T  42532697 catatttttctttataaaaacatagtagtctatttggttgtcaagcaaatagatgttcaaataaca 42532632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 43658670 - 43658605
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    |||| |||||||||||||||  | ||||||||| | |||||||| |||||| ||||||||||||||    
T  43658670 catacttttctttgtaaaaaaatagttgtcaatatggttgtcaaccaaattaatgttcaaataaca 43658605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 12070965 - 12071025
Alignment:
Q  22 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    |||||||||||||||  |||||||| || | |||||||| || ||||||||||||||||||    
T  12070965 ttttctttgtaaaaagatggttgtccatgtggttgtcaatcacattgatgttcaaataaca 12071025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 40358045 - 40357973
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 89  Q
    |||| |||||||||||||||| || ||||| ||||  |||||||  ||||||||||  |||||| ||||||||    
T  40358045 cataattttctttgtaaaaatatgattgtctatttgattgtcaaataaattgatgtgtaaataatactactct 40357973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 1795940 - 1795868
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 89  Q
    |||| ||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  1795940 catacttttcttggtaaaaatgtggttgtccatttagttgttaagcaaattgatgttcaaataacactactct 1795868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 49585107 - 49585179
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 89  Q
    |||| ||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  49585107 catacttttcttggtaaaaatgtggttgtccatttagttgtcaagcaaattaatgttcaaataacactactct 49585179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 11546859 - 11546788
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactc 88  Q
    |||| |||| |||||||||||||||||||| ||||  |||||||| ||||||||||||||||||||||||||    
T  11546859 cataattttttttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttcaaataacactactc 11546788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 48649631 - 48649694
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataa 80  Q
    |||| |||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||    
T  48649631 catacttttctttgttaaaatgtggttgtctatttagttgtcaaacaaattgatgttcaaataa 48649694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 50980703 - 50980774
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactc 88  Q
    |||| ||||||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||| |||||    
T  50980703 catacttttctttgtaaaaatgtgattgtccatttagttgtccagcaaattgatgtttaaataacattactc 50980774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 55609123 - 55609052
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactc 88  Q
    ||||||||||||||||||||   ||||||| |||| |||||||||||||| |||||||||||||||||||||    
T  55609123 catatttttctttgtaaaaacaaggttgtctatttggttgtcaagcaaatagatgttcaaataacactactc 55609052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 193645 - 193715
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactact 87  Q
    ||||||||||||||||||||  || ||||| |||| |||||||||||||| ||||||||||||||||||||    
T  193645 catatttttctttgtaaaaacatgattgtctatttggttgtcaagcaaatagatgttcaaataacactact 193715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 44257688 - 44257618
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactc 88  Q
    |||| |||||||| |||||||||| ||||| ||||||||||||| ||||||||||||||||| |||||||||    
T  44257688 catacttttctttataaaaatgtgattgtccatttagttgtcaaacaaattgatgttcaaat-acactactc 44257618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 16019589 - 16019654
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    ||||||||||||| ||||||| ||||||||||| |  ||||||| |||||||||||||||||||||    
T  16019589 catatttttctttataaaaatatggttgtcaatatgcttgtcaatcaaattgatgttcaaataaca 16019654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 19165391 - 19165319
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaattt-agttgtcaagcaaattgatgttcaaataacactactc 88  Q
    ||||||||||||||||||||| |||||||| |||  | ||||||| |||||||||||||||||||||| ||||    
T  19165391 catatttttctttgtaaaaatatggttgtccattagatttgtcaaacaaattgatgttcaaataacacaactc 19165319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 32224048 - 32224110
Alignment:
Q  22 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacact 84  Q
    |||||||||||||||  ||||| || ||||||||||||||||||| ||||||| |||||||||    
T  32224048 ttttctttgtaaaaacatggttatctatttagttgtcaagcaaatagatgttcgaataacact 32224110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 36123418 - 36123347
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactct 89  Q
    |||| |||||||||||||||  || ||||| ||||  ||||||||||||| ||||||||||||||||||||||    
T  36123418 catacttttctttgtaaaaacatg-ttgtctatttgattgtcaagcaaatagatgttcaaataacactactct 36123347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 47015123 - 47015183
Alignment:
Q  22 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    |||||||||||||||| || |||||||| | |||||||| |||| ||||||||||||||||    
T  47015123 ttttctttgtaaaaatatgattgtcaatgtggttgtcaaccaaactgatgttcaaataaca 47015183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 15522472 - 15522532
Alignment:
Q  22 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    |||||||||||||||  |||||||| || | |||||||| || ||||||||||||||||||    
T  15522472 ttttctttgtaaaaagatggttgtccatgtggttgtcaatcacattgatgttcaaataaca 15522532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 46665153 - 46665097
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgtt 73  Q
    |||| ||||||||||||| || ||||||||||||| |||||||| ||| ||||||||    
T  46665153 catacttttctttgtaaatatatggttgtcaatttggttgtcaatcaagttgatgtt 46665097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 34363664 - 34363735
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactc 88  Q
    |||| |||||||||||| ||||||||||||  || || |||||| |||||  ||||||||||||||| ||||    
T  34363664 catacttttctttgtaataatgtggttgtctgttaagctgtcaaacaaataaatgttcaaataacacaactc 34363735  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 624266 - 624198
Alignment:
Q  21 tttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaatt-gatgttcaaataacactactct 89  Q
    ||||||||||||||||| |||||||||| | ||||||| | |||||| | ||||||||||||||| ||||    
T  624266 tttttctttgtaaaaatatggttgtcaaataagttgtc-accaaattagttgttcaaataacacttctct 624198  T

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Target: scaffold0053 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 12610 - 12681
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactc 88  Q
    |||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  12610 catacttttcttggtaaaaatgtggttgtccatttagttgtcaagcaaattgatgttcaaataactctactc 12681  T

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Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 22098368 - 22098439
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactc 88  Q
    |||| ||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||    
T  22098368 catacttttctttgtaaaaatgtggttgtccatttaattatcaagcaaattgatgttcaaataacactactc 22098439  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 27947316 - 27947367
Alignment:
Q  168 atacatgccgtttgtttttgaaattctcgtctttgcattatcatttcatctc 219  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27947316 atacatgccgtttgtttttgaaattctcgtcttcgcattatcatttcatctc 27947367  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 16690612 - 16690686
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactctag 91  Q
    |||| |||||||||||||||| ||||||||||| | |||||||| ||||||||| ||||||||||| | ||||||    
T  16690612 catacttttctttgtaaaaatatggttgtcaatgtggttgtcaaccaaattgatattcaaataacattgctctag 16690686  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 38293311 - 38293245
Alignment:
Q  22 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactc 88  Q
    |||||||||||||||  || ||||| |||| |||||||||||||| |||||||||||||||||||||    
T  38293311 ttttctttgtaaaaacatgattgtctatttggttgtcaagcaaatagatgttcaaataacactactc 38293245  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 38493738 - 38493803
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    |||| |||||||||| ||||| ||| ||||||| | |||||||| |||||||||||||||||||||    
T  38493738 catacttttctttgttaaaatatgggtgtcaatgtggttgtcaaccaaattgatgttcaaataaca 38493803  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 26686996 - 26687047
Alignment:
Q  22 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgtt 73  Q
    |||||||||||||||| ||||||||||| |||||||||| |||||| |||||    
T  26686996 ttttctttgtaaaaatatggttgtcaatgtagttgtcaatcaaattaatgtt 26687047  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 26956727 - 26956778
Alignment:
Q  22 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgtt 73  Q
    |||||||||||||||| ||||||||||| |||||||||| |||||| |||||    
T  26956727 ttttctttgtaaaaatatggttgtcaatgtagttgtcaatcaaattaatgtt 26956778  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 32639156 - 32639226
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactact 87  Q
    |||| ||||||||||||||||  | ||||| ||||  |||||| |||||| ||||||||||||||||||||    
T  32639156 catacttttctttgtaaaaataagattgtctatttgattgtcatgcaaatagatgttcaaataacactact 32639226  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 34940751 - 34940809
Alignment:
Q  22 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataa 80  Q
    |||||||| ||||||| || |||||||| | |||||||| |||||||||||||||||||    
T  34940751 ttttctttataaaaatatgattgtcaatgtggttgtcaaccaaattgatgttcaaataa 34940809  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 9168125 - 9168061
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    |||| |||||||||||||| | || |||||||| | |||||||| |||||||||||||||||||||    
T  9168125 catacttttctttgtaaaa-tatgattgtcaatatggttgtcaaccaaattgatgttcaaataaca 9168061  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 14321913 - 14321850
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataa 80  Q
    |||| |||||||||||||| | |||||||| || | ||||||||  ||||||||||||||||||    
T  14321913 cataattttctttgtaaaagtatggttgtccatatggttgtcaattaaattgatgttcaaataa 14321850  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 40364686 - 40364749
Alignment:
Q  22 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacacta 85  Q
    |||||||| ||||||  ||||| || ||||  ||||||||||||| ||||||||||||||||||    
T  40364686 ttttctttctaaaaacatggttatctatttgattgtcaagcaaatagatgttcaaataacacta 40364749  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 884554 - 884619
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    |||| ||||| |||||||||| ||||||| ||| |  |||||||  ||||||||||||||||||||    
T  884554 catacttttcattgtaaaaatatggttgttaatatgattgtcaactaaattgatgttcaaataaca 884619  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 35822933 - 35822868
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    ||||||||||||||||||||| ||||||||||  | |||||||| |||||||||||||||||||||    
T  35822933 catatttttctttgtaaaaatatggttgtcaacgtggttgtcaaccaaattgatgttcaaataaca 35822868  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 44496761 - 44496699
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaata 79  Q
    |||| |||||||||||||||| |||||||| ||||| ||||||| ||||||||||||||||||    
T  44496761 cataattttctttgtaaaaatatggttgtccatttaattgtcaaacaaattgatgttcaaata 44496699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 31398237 - 31398308
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactc 88  Q
    ||||||||||||||||||||   ||||||| |||| |||||||| |||||  ||||||||||||||||||||    
T  31398237 catatttttctttgtaaaaacaaggttgtctatttggttgtcaaacaaataaatgttcaaataacactactc 31398308  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 41590478 - 41590415
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataa 80  Q
    |||||||||| |||||||||  |||||||| |||| |||||||||||||| |||||||||||||    
T  41590478 catatttttccttgtaaaaacatggttgtctatttggttgtcaagcaaatagatgttcaaataa 41590415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 26018153 - 26018226
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataacactactcta 90  Q
    |||| |||||||| ||||||| || ||||| ||||| ||||||||||||| || |||||||||| |||||||||    
T  26018153 catacttttctttataaaaatatgattgtctatttaattgtcaagcaaatagacgttcaaataaaactactcta 26018226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 48145661 - 48145697
Alignment:
Q  53 gttgtcaagcaaattgatgttcaaataacactactct 89  Q
    |||||||||||||||||||||||||||||||||||||    
T  48145661 gttgtcaagcaaattgatgttcaaataacactactct 48145697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 41430105 - 41430045
Alignment:
Q  22 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    |||||||||||||||  |||||||| || | |||||||| || ||||||||||||||||||    
T  41430105 ttttctttgtaaaaagatggttgtccatgtggttgtcaatcacattgatgttcaaataaca 41430045  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 42584920 - 42584980
Alignment:
Q  22 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    |||||||||||||||  |||||||| || | |||||||| || ||||||||||||||||||    
T  42584920 ttttctttgtaaaaagatggttgtccatgtggttgtcaatcacattgatgttcaaataaca 42584980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 44651184 - 44651126
Alignment:
Q  21 tttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaata 79  Q
    ||||| ||||||||||| | ||| ||||| ||||||||||  |||||||||||||||||    
T  44651184 tttttttttgtaaaaatatagttatcaatatagttgtcaatgaaattgatgttcaaata 44651126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 36352538 - 36352477
Alignment:
Q  22 ttttctttgtaaaaatgtggttgtcaatttagtt-gtcaagcaaattgatgttcaaataaca 82  Q
    |||||||||||||||  |||||||| || ||||| ||||| || ||||||||||||||||||    
T  36352538 ttttctttgtaaaaagatggttgtccatgtagtttgtcaatcacattgatgttcaaataaca 36352477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 7172 - 7247
Alignment:
Q  17 catatttttctttgtaaaaatgtggttgtcaatttagttgt-------caagcaaattgatgttcaaataacactact 87  Q
    |||| |||||||||||||  |||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  7172 catacttttctttgtaaa--tgtggttgtcaatttagttgtcatttgtcaagcaaattgatgttcaaataacactact 7247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 1262 - 1322
Alignment:
Q  22 ttttctttgtaaaaatgtggttgtcaatttagttgtcaagcaaattgatgttcaaataaca 82  Q
    |||||||||||||||| || |||||||| | |||||||| |||| ||||||||||||||||    
T  1262 ttttctttgtaaaaatatgattgtcaatgtggttgtcaaccaaactgatgttcaaataaca 1322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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