View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12107_low_1 (Length: 654)
Name: NF12107_low_1
Description: NF12107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12107_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 11 - 635
Target Start/End: Original strand, 31869639 - 31870259
Alignment:
| Q |
11 |
cacagaccagcaagatatttgagtgttaataattctcaaccacaaacatcgacttcaaaaaataannnnnnncgatgttttaaatggcagtgtaaaggtt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31869639 |
cacagaccagcaagatatttgagtgttaataattctcaaccacaaacatcgacttcaaaaaataatttttttcgatgttttaaatggcagtgtaaaggtt |
31869738 |
T |
|
| Q |
111 |
acactacatttgccagcagacctttagattgcatcatgtaatgcagctgcaaaggttttaaacagaagtctgtgactgagatctgggcagcaacatcagg |
210 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31869739 |
acactacatttgccagcagacttttagattgcatcatgtaatgcagctgcaaaggttttaaacagaagtttgtgactgagatctgggcagcaacatcagg |
31869838 |
T |
|
| Q |
211 |
gtttttgttgttactgtgactataattgagatagcatcggtcacatttgagtgcaattctctgttatatcaaggaccatggcgcgaccacaatttaaaac |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31869839 |
gtttttgttgttactgtgactataattgagatagcatcggtcgcatttgagtgcaattctctgttatatcaaggaccatggcgcgaccacaatttaaaac |
31869938 |
T |
|
| Q |
311 |
gttacactacattaccccgatgcatgtttaaagtttcaacatcaagc-aaactatacaaagccaatataaactaaaccgtgcacaattttgttttgttgt |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31869939 |
gttacactacattaccccgatgcatgtttaaagtttcaacatcaagcaaaactatacaaagccaatataaactaaaccgtgcacaa-----ttttgttgt |
31870033 |
T |
|
| Q |
410 |
taagttacttttcagcacaaatcaatttacttcaaactccttttaactaaaatcaaaattaactaaaacaaaaaccaagattaagcagggtcacctttga |
509 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31870034 |
taagttacttttcaacacaaatcaatttacttcaaactccttttaactaaaatcaaaattaactaaaacaaaaaccaagattaagcagggtcacctttga |
31870133 |
T |
|
| Q |
510 |
atcctctttaaggtttgtggattaatctcagcctgtgtaggaggacccatcctcttcttcataatctcattaccccatttcaacctatcaacagtaacat |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31870134 |
atcctctttaaggtttgtggattaatctcagcctgtgtaggaggacccatcttcttcttcataatctcattaccccatttcaacctatcaacagtaacat |
31870233 |
T |
|
| Q |
610 |
ccccacaccacaaaatccctttaacc |
635 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
31870234 |
ccccacaccacaaaatccctttaacc |
31870259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 556 - 628
Target Start/End: Complemental strand, 8851693 - 8851621
Alignment:
| Q |
556 |
ccatcctcttcttcataatctcattaccccatttcaacctatcaacagtaacatccccacaccacaaaatccc |
628 |
Q |
| |
|
||||||| |||||||||| || ||| ||||||| ||||||||| | ||||||||| ||||||||||||||||| |
|
|
| T |
8851693 |
ccatccttttcttcataacctgattcccccattgcaacctatccatagtaacatcaccacaccacaaaatccc |
8851621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 560 - 625
Target Start/End: Original strand, 27878304 - 27878369
Alignment:
| Q |
560 |
cctcttcttcataatctcattaccccatttcaacctatcaacagtaacatccccacaccacaaaat |
625 |
Q |
| |
|
|||||||||||| | |||| |||||||||||| ||||||||||||||||| || ||||||||||| |
|
|
| T |
27878304 |
cctcttcttcatgaaatcatcaccccatttcaatctatcaacagtaacatcaccgcaccacaaaat |
27878369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University