View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12107_low_2 (Length: 560)
Name: NF12107_low_2
Description: NF12107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12107_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 56 - 554
Target Start/End: Original strand, 2902530 - 2903050
Alignment:
| Q |
56 |
gctatgaagaatcgctaacaaggagatgaaagactcatgtaccgaacaattgtgatggagaaaa-------------------acaatgtttcagaattt |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
2902530 |
gctatgaagaatcgctaacaaggagatgaaagactcatgtaccgaacaattgtgatggagaaaagacggaagacattttagaaacaatgtttcagtattt |
2902629 |
T |
|
| Q |
137 |
tcaaaaaattgtaaaggaaaatataggaattatattatcttatgttatttagttgaagtgaaaatgaaaacaacattacctatcaattatttccttgagc |
236 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
2902630 |
tcaaaaaattgtaaaagaaaatataggaattatattatcttatgttatttagttgaagtgaaaatgaaaacaacattacctatcaattctttccttaagc |
2902729 |
T |
|
| Q |
237 |
ttcaacaaaaacttttcatttccctcttcagcaacattaatcaacctatccaagagtttctgtttctcttggaatccaagatc---tgttatatcaacct |
333 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||| | ||||| ||||||||||| | |||||||| || |
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|
| T |
2902730 |
ttcaacaaaaacttctcatttccctcttcagcaacattgatcaacctatccaatagtttttgtctttcttgaaatccaagatcacttaatatatcaatct |
2902829 |
T |
|
| Q |
334 |
cattagcaactccacgcgatgtcgccaacaaccctttcctcaaacggttataagtcgggagtttttcaagtgcagcccatctaagagcttcttcatcctc |
433 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2902830 |
catttgcaactccacgcgatgtcgccaacaaccctttccttaaacggttataagtcgggagtttttcaagtgcagcccatctaagagcttcttcatcctc |
2902929 |
T |
|
| Q |
434 |
tcctccatgccgtgatgacatcggaaaagcctccattttactgtttctccaaactgtagtagaagaactactcattcggaaactgttacctgctttgtat |
533 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2902930 |
tcctccatgccgtgatgacatcgaaaaagcctccattttactgtttctccaaactgtagtagaagaactactcattcggaaactgttacctgctttgtat |
2903029 |
T |
|
| Q |
534 |
atatcacttccttccacaggt |
554 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
2903030 |
atatcacttccttccataggt |
2903050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 154 - 508
Target Start/End: Complemental strand, 2882426 - 2882069
Alignment:
| Q |
154 |
aaaatataggaattatattatcttatgttatttagttgaagtgaaaatgaaaacaacattacctatcaattatttccttgagcttcaacaaaaacttttc |
253 |
Q |
| |
|
|||| |||||| |||||| |||||| || || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
2882426 |
aaaacataggatctatattctcttatatttttcagttgaagtgaaaatgaaaacaacattacctatcaattctttccttgagcttcaacaaaaacttttc |
2882327 |
T |
|
| Q |
254 |
atttccctcttcagcaacattaatcaacctatccaagagtttctgtttctcttggaatccaagatctgttatatcaacctcattagcaactccacgcgat |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2882326 |
atttccctcttcagcaacattaatcaacctatccaagagtttctgtttctcttgaaatccaagatctgttatatcaacctcattagcaactccacgcgat |
2882227 |
T |
|
| Q |
354 |
gtcgccaacaaccctttcctcaaacggttataagtcgggagtttttcaagtgcagcccatctaagagcttctt---catcctctcctccatgccgtgatg |
450 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||| ||| || | |||| || | |
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|
| T |
2882226 |
gtcgccaacaatcctttcctcaaacggttataagtagggagtttttcaagtgcagcccatttaagagcttcttcatcatcatcttcttcgcgccgcgaag |
2882127 |
T |
|
| Q |
451 |
acatcggaaaagcctccattttactgtttctccaaactgtagtagaagaactactcat |
508 |
Q |
| |
|
|| | | ||||||||||||| ||| |||||||||| |||||||||||||||| ||||| |
|
|
| T |
2882126 |
actttgcaaaagcctccattgtaccgtttctccaacctgtagtagaagaacttctcat |
2882069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 213 - 430
Target Start/End: Complemental strand, 2872077 - 2871857
Alignment:
| Q |
213 |
tacctatcaattatttccttgagcttcaacaaaaacttttcatttccctcttcagcaacattaatcaacctatccaagagtttctgtttctcttggaatc |
312 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||| | || |||||||||| ||| ||||||||| | ||||| | || |
|
|
| T |
2872077 |
tacctatcaattctttcctttagcttcaacaaaaacttttcattatcctcttcagcagctttgatcaacctattcaaaagtttctgtctttcttgaactc |
2871978 |
T |
|
| Q |
313 |
caagatctgttatatc---aacctcattagcaactccacgcgatgtcgccaacaaccctttcctcaaacggttataagtcgggagtttttcaagtgcagc |
409 |
Q |
| |
|
|||| | |||||| || |||||| ||||||||| | || | ||||||||||||||| | ||||| || ||||| ||||||||||||| |||||| |
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|
| T |
2871977 |
caagtttatctatatcaataatctcattggcaactccatgtgaactggccaacaaccctttctttaaacgattgtaagtagggagtttttcaattgcagc |
2871878 |
T |
|
| Q |
410 |
ccatctaagagcttcttcatc |
430 |
Q |
| |
|
|||| | || ||||||||||| |
|
|
| T |
2871877 |
ccatttgagggcttcttcatc |
2871857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 212 - 430
Target Start/End: Original strand, 44227138 - 44227356
Alignment:
| Q |
212 |
ttacctatcaattatttccttgagcttcaacaaaaacttttcatttccctcttcagcaacattaatcaacctatccaagagtttctgtttctcttggaat |
311 |
Q |
| |
|
||||||||||| | ||||||||| |||||||| |||| ||||||| ||||||||||||| |||| |||||| ||||| |||||||| || ||||| || |
|
|
| T |
44227138 |
ttacctatcaactctttccttgaccttcaacagaaacctttcattatcctcttcagcaaccttaaccaacctctccaaaagtttctgcttttcttgaaaa |
44227237 |
T |
|
| Q |
312 |
ccaagatctgttatatcaacctcattagcaactccacgcgatgtcgccaacaaccctttcctcaaacggttataagtcgggagtttttcaagtgcagccc |
411 |
Q |
| |
|
||||||| | |||||| |||| |||| ||||| | || | | |||||| ||||| || | ||| |||||||| || || |||||||||||||||| |
|
|
| T |
44227238 |
gcaagatcaccaacatcaacttcatgagcacctccatgagaagctgtcaacaaaccttttcttagacgattataagtaggtagcttttcaagtgcagccc |
44227337 |
T |
|
| Q |
412 |
atctaagagcttcttcatc |
430 |
Q |
| |
|
|| | |||||||||||||| |
|
|
| T |
44227338 |
atttgagagcttcttcatc |
44227356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 213 - 430
Target Start/End: Original strand, 44238272 - 44238489
Alignment:
| Q |
213 |
tacctatcaattatttccttgagcttcaacaaaaacttttcatttccctcttcagcaacattaatcaacctatccaagagtttctgtttctcttggaatc |
312 |
Q |
| |
|
|||||||||| | | ||||| | |||||||| |||| |||||| | ||||||||||| |||| |||||| ||||| ||||||||||| ||||| || |
|
|
| T |
44238272 |
tacctatcaactctctccttaaccttcaacagaaacccttcattatcttcttcagcaaccttaaccaacctctccaaaagtttctgtttatcttgaaaag |
44238371 |
T |
|
| Q |
313 |
caagatctgttatatcaacctcattagcaactccacgcgatgtcgccaacaaccctttcctcaaacggttataagtcgggagtttttcaagtgcagccca |
412 |
Q |
| |
|
||||||| | |||||| |||| |||| | ||| | || | | |||||||||||| || | ||| || ||||| || ||||||||||| |||||||| |
|
|
| T |
44238372 |
caagatcaccaacatcaacttcatgagcaccaccatgagaagctgtcaacaacccttttcttagacgattgtaagtaggtagtttttcaagggcagccca |
44238471 |
T |
|
| Q |
413 |
tctaagagcttcttcatc |
430 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
44238472 |
tttaagagcttcttcatc |
44238489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 211 - 430
Target Start/End: Original strand, 44214979 - 44215198
Alignment:
| Q |
211 |
attacctatcaattatttccttgagcttcaacaaaaacttttcatttccctcttcagcaacattaatcaacctatccaagagtttctgtttctcttggaa |
310 |
Q |
| |
|
|||||||||||| | ||||||||| |||||||| |||| |||||| ||||||||||||| ||| |||||| ||||| || ||||| || |||| || |
|
|
| T |
44214979 |
attacctatcaactctttccttgaccttcaacagaaacccttcattatcctcttcagcaaccctaaccaacctctccaaaagcttctgcttttctttaaa |
44215078 |
T |
|
| Q |
311 |
tccaagatctgttatatcaacctcattagcaactccacgcgatgtcgccaacaaccctttcctcaaacggttataagtcgggagtttttcaagtgcagcc |
410 |
Q |
| |
|
||||||| | |||||| |||| |||| ||||| | || | | |||||| ||||| || | ||| || ||||| || |||||||||||||||||| |
|
|
| T |
44215079 |
agcaagatcaccaacatcaacttcatgagcacctccatgagaagctgtcaacaaaccttttcttagacgattgtaagtaggtagtttttcaagtgcagcc |
44215178 |
T |
|
| Q |
411 |
catctaagagcttcttcatc |
430 |
Q |
| |
|
||| | |||||||||||||| |
|
|
| T |
44215179 |
catttgagagcttcttcatc |
44215198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 430
Target Start/End: Complemental strand, 39344223 - 39344159
Alignment:
| Q |
366 |
cctttcctcaaacggttataagtcgggagtttttcaagtgcagcccatctaagagcttcttcatc |
430 |
Q |
| |
|
|||||||||||||| | | |||| || ||||| | || |||||||||| |||||||||||||||| |
|
|
| T |
39344223 |
cctttcctcaaacgttcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatc |
39344159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 430
Target Start/End: Original strand, 39552748 - 39552812
Alignment:
| Q |
366 |
cctttcctcaaacggttataagtcgggagtttttcaagtgcagcccatctaagagcttcttcatc |
430 |
Q |
| |
|
|||||||||||||| | | |||| || ||||| | || |||||||||| |||||||||||||||| |
|
|
| T |
39552748 |
cctttcctcaaacgttcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatc |
39552812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 13806144 - 13806184
Alignment:
| Q |
168 |
atattatcttatgttatttagttgaagtgaaaatgaaaaca |
208 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
13806144 |
atattctcttatgtttattagttgaagtgaaaatgaaaaca |
13806184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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